Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2712c_(-)_3024280_3025338
DateWed Aug 7 12:50:36 BST 2019
Unique Job IDe2541932a9c30099
SequenceMTKYRGQFEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.590 Y:33.091 Z:35.797
Model (left) based on template d2pqrb1
Top template information
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
Confidence and coverage
Confidence: 85.8% Coverage: 21%
74 residues ( 21% of your sequence) have been modelled with 85.8% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pqrb1



85.8 15
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
2d1nzna_



79.7 17
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
3c2qlcC_



77.7 10
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
4d1y8ma1



70.5 15
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
5d1iyga_



59.0 17
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
6c4f3vB_



48.0 17
PDB header:protein transport
Chain: B: PDB Molecule:esx-1 secretion system protein ecca1;
PDBTitle: crystal structure of n-terminal domain of ecca1 atpase from esx-12 secretion system of mycobacterium tuberculosis
7c4ui9K_



47.4 13
PDB header:cell cycle
Chain: K: PDB Molecule:cell division cycle protein 16 homolog;
PDBTitle: atomic structure of the human anaphase-promoting complex
8c2xpiA_



38.7 19
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit cut9;
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
9d1pc2a_



32.8 16
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
10d1tjca_



30.9 26
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
11c3beeB_



30.5 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative yfre protein;
PDBTitle: crystal structure of putative yfre protein from vibrio2 parahaemolyticus
12c5tmxA_



30.1 22
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
13c4fm4C_



28.3 22
PDB header:lyase
Chain: C: PDB Molecule:nitrile hydratase alpha subunit;
PDBTitle: wild type fe-type nitrile hydratase from comamonas testosteroni ni1
14d1i94l_



27.4 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
15d2icsa2



26.5 19
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Adenine deaminase-like
16d2uubl1



22.4 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
17c3j6vL_



19.6 21
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
18c1zn1L_



19.4 14
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
19d1i0da_



16.5 18
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Phosphotriesterase-like
20d1g5aa1



15.8 19
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
21c6evoA_



not modelled 14.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl 4-hydroxylase subunit alpha-2;
PDBTitle: crystal structure the peptide-substrate-binding domain of human type2 ii collagen prolyl 4-hydroxylase complexed with pro-pro-gly-pro-arg-3 gly-pro-pro-gly.
22c3j20N_



not modelled 14.0 19
PDB header:ribosome
Chain: N: PDB Molecule:30s ribosomal protein s12p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
23d1kcxa2



not modelled 13.8 17
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase), catalytic domain
24c2k2uB_



not modelled 13.7 50
PDB header:transcription
Chain: B: PDB Molecule:alpha trans-inducing protein;
PDBTitle: nmr structure of the complex between tfb1 subunit of tfiih2 and the activation domain of vp16
25c4bt8B_



not modelled 13.6 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:prolyl 4-hydroxylase subunit alpha-1;
PDBTitle: crystal structure of the apo form of n-terminal domain and2 peptide substrate binding domain of prolyl-4 hydroxylase3 type i from human
26d2qall1



not modelled 13.3 14
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
27d1iioa_



not modelled 13.0 58
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
28d1o12a2



not modelled 12.5 11
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain
29c3mixA_



not modelled 12.2 30
PDB header:protein transport
Chain: A: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: crystal structure of the cytosolic domain of b. subtilis flha
30c4xvnC_



not modelled 11.9 44
PDB header:viral protein
Chain: C: PDB Molecule:small terminase;
PDBTitle: crystal structure of the small terminase from thermophilic phage g20c
31c4u0zH_



not modelled 11.8 23
PDB header:transferase
Chain: H: PDB Molecule:adenosine monophosphate-protein transferase ficd;
PDBTitle: eukaryotic fic domain containing protein with bound apcpp
32c3hymB_



not modelled 11.7 10
PDB header:cell cycle, ligase
Chain: B: PDB Molecule:cell division cycle protein 16 homolog;
PDBTitle: insights into anaphase promoting complex tpr subdomain2 assembly from a cdc26-apc6 structure
33c4jx0A_



not modelled 11.0 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a two domain protein with unknown function2 (bf3416) from bacteroides fragilis nctc 9343 at 2.90 a resolution
34c6q8jA_



not modelled 10.9 33
PDB header:splicing
Chain: A: PDB Molecule:wd40 repeat-containing protein smu1;
PDBTitle: nterminal domain of human smu1 in complex with lsp641
35c6h82b_



not modelled 10.8 44
PDB header:virus
Chain: B: PDB Molecule:vp4;
PDBTitle: cryo-em structure of the archaeal extremophilic internal membrane2 containing haloarcula hispanica icosahedral virus 2 (hhiv-2) at 3.783 angstroms resolution.
36c3msrA_



not modelled 10.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolases;
PDBTitle: the crystal structure of an amidohydrolase from mycoplasma synoviae
37d2gs5a1



not modelled 9.8 14
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
38d1onwa2



not modelled 9.5 8
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Isoaspartyl dipeptidase, catalytic domain
39d2q0ta1



not modelled 9.2 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
40c1n0wB_



not modelled 9.2 57
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: crystal structure of a rad51-brca2 brc repeat complex
41c5y10C_



not modelled 9.2 44
PDB header:viral protein
Chain: C: PDB Molecule:membrane glycoprotein polyprotein;
PDBTitle: sftsv gn head domain
42c5a1sB_



not modelled 9.2 36
PDB header:transport protein
Chain: B: PDB Molecule:citrate-sodium symporter;
PDBTitle: crystal structure of the sodium-dependent citrate symporter secits2 form salmonella enterica.
43c2iykB_



not modelled 9.1 33
PDB header:hydrolase
Chain: B: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
44c2xzmL_



not modelled 9.1 31
PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s12;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
45c3eebB_



not modelled 8.9 19
PDB header:toxin
Chain: B: PDB Molecule:rtx toxin rtxa;
PDBTitle: structure of the v. cholerae rtx cysteine protease domain
46c4rg9S_



not modelled 8.8 44
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex (selenomethionine derivative)
47c4rg6S_



not modelled 8.8 44
PDB header:protein binding
Chain: S: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: crystal structure of apc3-apc16 complex
48d2puza2



not modelled 8.3 16
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Imidazolonepropionase-like
49c3mydA_



not modelled 8.2 30
PDB header:protein transport
Chain: A: PDB Molecule:flagellar biosynthesis protein flha;
PDBTitle: structure of the cytoplasmic domain of flha from helicobacter pylori
50c1s1hL_



not modelled 8.0 31
PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s23;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
51c3u4tA_



not modelled 7.8 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tpr repeat-containing protein;
PDBTitle: crystal structure of the c-terminal part of the tpr repeat-containing2 protein q11ti6_cyth3 from cytophaga hutchinsonii. northeast3 structural genomics consortium target chr11b.
52c2q7fA_



not modelled 7.6 20
PDB header:protein binding
Chain: A: PDB Molecule:yrrb protein;
PDBTitle: crystal structure of yrrb: a tpr protein with an unusual peptide-2 binding site
53d1de4c3



not modelled 7.5 30
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:FolH catalytic domain-like
54d1hxia_



not modelled 7.4 19
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
55c3zeyS_



not modelled 7.0 34
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s23, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
56c2muiA_



not modelled 6.8 16
PDB header:unknown function
Chain: A: PDB Molecule:upf0301 protein algh;
PDBTitle: solution structure of the algh protein from pseudomonas aeruginosa,2 pa0405, upf0301
57c2kztA_



not modelled 6.5 14
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: structure of the tandem ma-3 region of pdcd4
58c3u5gX_



not modelled 6.5 31
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s23-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
59c4g9qA_



not modelled 6.5 22
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
60c1cx8F_



not modelled 6.4 30
PDB header:metal transport
Chain: F: PDB Molecule:transferrin receptor protein;
PDBTitle: crystal structure of the ectodomain of human transferrin receptor
61c5f3xB_



not modelled 6.3 13
PDB header:structural protein/protein binding
Chain: B: PDB Molecule:ankyrin repeat and sam domain-containing protein 4b;
PDBTitle: crystal structure of harmonin npdz1 in complex with anks4b sam-pbm
62c3k9iA_



not modelled 6.0 16
PDB header:protein binding
Chain: A: PDB Molecule:bh0479 protein;
PDBTitle: crystal structure of putative protein binding protein (np_241345.1)2 from bacillus halodurans at 2.71 a resolution
63c5en7A_



not modelled 5.9 20
PDB header:splicing
Chain: A: PDB Molecule:smu-1;
PDBTitle: crystal structure of the smu1-red complex (native) of caenorhabditis2 elegans.
64c3pa8A_



not modelled 5.8 17
PDB header:toxin/peptide inhibitor
Chain: A: PDB Molecule:toxin b;
PDBTitle: structure of the c. difficile tcdb cysteine protease domain in complex2 with a peptide inhibitor
65d2ezha_



not modelled 5.6 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
66c2l3vA_



not modelled 5.6 25
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: nmr structure of acyl carrier protein from brucella melitensis
67c3nqbB_



not modelled 5.5 26
PDB header:hydrolase
Chain: B: PDB Molecule:adenine deaminase 2;
PDBTitle: crystal structure of adenine deaminase from agrobacterium tumefaciens2 (str. c 58)
68d3be7a2



not modelled 5.5 19
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Zn-dependent arginine carboxypeptidase-like
69c2wpvH_



not modelled 5.3 57
PDB header:protein binding
Chain: H: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: crystal structure of s. cerevisiae get4-get5 complex
70c2wpvF_



not modelled 5.3 57
PDB header:protein binding
Chain: F: PDB Molecule:ubiquitin-like protein mdy2;
PDBTitle: crystal structure of s. cerevisiae get4-get5 complex
71d2ftwa2



not modelled 5.3 19
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Hydantoinase (dihydropyrimidinase), catalytic domain
72d1wf9a1



not modelled 5.2 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
73c3as5A_



not modelled 5.2 20
PDB header:protein binding
Chain: A: PDB Molecule:mama;
PDBTitle: mama amb-1 p212121
74c3aiiA_



not modelled 5.2 22
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus
75c1pscA_



not modelled 5.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase;
PDBTitle: phosphotriesterase from pseudomonas diminuta
76c2kckA_



not modelled 5.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tpr repeat;
PDBTitle: nmr solution structure of the northeast structural genomics consortium2 (nesg) target mrr121a
77d2bb0a2



not modelled 5.1 22
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Imidazolonepropionase-like
78c2xevB_



not modelled 5.1 24
PDB header:metal binding
Chain: B: PDB Molecule:ybgf;
PDBTitle: crystal structure of the tpr domain of xanthomonas2 campestris ybgf
79c4ui9E_



not modelled 5.0 44
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex

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