Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2718c_(-)_3030423_3030887
DateWed Aug 7 12:50:37 BST 2019
Unique Job IDd163f1997e7203ba
SequenceMHCPFCRHPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.637 Y:35.877 Z:49.203
Model (left) based on template c5im3A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of the class i ribonucleotide reductase from2 pseudomonas aeruginosa in complex with datp
Confidence and coverage
Confidence: 99.6% Coverage: 62%
96 residues ( 62% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
146 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5im3A_
99.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: crystal structure of the class i ribonucleotide reductase from2 pseudomonas aeruginosa in complex with datp
2c5olkD_
99.5 27
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, beta subunit 1;
PDBTitle: crystal structure of the atp-cone-containing nrdb from2 leeuwenhoekiella blandensis
3c3r1rB_
98.6 27
PDB header:complex (oxidoreductase/peptide)
Chain: B: PDB Molecule:ribonucleotide reductase r1 protein;
PDBTitle: ribonucleotide reductase r1 protein with amppnp occupying2 the activity site from escherichia coli
4d1rlra1
98.0 23
Fold:R1 subunit of ribonucleotide reductase, N-terminal domain
Superfamily:R1 subunit of ribonucleotide reductase, N-terminal domain
Family:R1 subunit of ribonucleotide reductase, N-terminal domain
5c3pawD_
97.6 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase large chain 1;
PDBTitle: low resolution x-ray crystal structure of yeast rnr1p with datp bound2 in the a-site
6d1qypa_
96.1 26
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
7d1twfi2
95.8 24
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
8c1i3qI_
95.1 24
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
9d1tfia_
94.6 29
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
10c4c2mX_
94.1 31
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
11c3k7aM_
94.0 31
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
12c4v1oM_
93.7 31
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
13c3h0gI_
93.4 27
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
14c3gn5B_
93.1 25
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
15c5iy9M_
92.9 41
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
16c5fz5M_
91.9 11
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
17c5flmI_
91.2 32
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
18c2gb5B_
90.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
19d1wiia_
90.3 29
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Putative zinc binding domain
20c5xogM_
89.6 29
PDB header:transcription
Chain: M: PDB Molecule:transcription elongation factor 1 homolog;
PDBTitle: rna polymerase ii elongation complex bound with spt5 kow5 and elf1
21d2fiya1
not modelled 87.8 22
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
22d1dl6a_
not modelled 87.1 42
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
23c3k1fM_
not modelled 85.4 21
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
24c5fjaI_
not modelled 84.8 13
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
25c2e9hA_
not modelled 83.8 33
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5
26c3hnfA_
not modelled 81.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase large subunit;
PDBTitle: crystal structure of human ribonucleotide reductase 1 bound to the2 effectors ttp and datp
27c3cngC_
not modelled 79.5 23
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
28d1ls1a1
not modelled 77.9 14
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
29d1rj9b1
not modelled 77.2 13
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
30c2nb9A_
not modelled 76.5 39
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
31c3ndjA_
not modelled 76.5 23
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
32c2qkdA_
not modelled 75.2 23
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
33c1nuiA_
not modelled 75.2 23
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
34d1pfva3
not modelled 74.7 33
Fold:Rubredoxin-like
Superfamily:Methionyl-tRNA synthetase (MetRS), Zn-domain
Family:Methionyl-tRNA synthetase (MetRS), Zn-domain
35c3izrm_
not modelled 73.0 35
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
36d1pfta_
not modelled 72.1 31
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
37d1vqoz1
not modelled 71.7 43
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
38c3j39p_
not modelled 71.3 35
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
39c3j21i_
not modelled 71.1 48
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
40d2k4xa1
not modelled 70.8 41
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
41c4a17Y_
not modelled 70.6 35
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
42c5vkyB_
not modelled 70.1 21
PDB header:protein binding
Chain: B: PDB Molecule:topoisomerase i damage affected protein 2;
PDBTitle: yeast tda2 (yer071c) - a dynein light chain family member that works2 independently of the dynein motor complex and microtubules.
43c2qa4Z_
not modelled 69.8 43
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
44c2zkrz_
not modelled 69.7 29
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
45c4bpo9_
not modelled 69.7 31
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
46c1yshD_
not modelled 69.4 35
PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
47d1wgwa_
not modelled 69.1 14
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
48c3zf7o_
not modelled 68.8 35
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
49d1jj2y_
not modelled 68.5 29
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
50c4b6ap_
not modelled 68.0 26
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
51c6f5zC_
not modelled 67.5 13
PDB header:transferase
Chain: C: PDB Molecule:upf0434 family protein;
PDBTitle: complex between the haloferax volcanii trm112 methyltransferase2 activator and the hvo_0019 putative methyltransferase
52d1j8yf1
not modelled 67.2 9
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
53c2elpA_
not modelled 66.6 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
54c3cc4Z_
not modelled 66.2 43
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
55c6cnbR_
not modelled 66.0 22
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
56d1ffkw_
not modelled 65.9 29
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
57c1s1i9_
not modelled 64.6 26
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
58c4rvgA_
not modelled 64.3 21
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
59c2xzn9_
not modelled 63.1 31
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
60c2xzm9_
not modelled 63.1 31
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
61c3jyw9_
not modelled 61.9 26
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
62c6f42V_
not modelled 60.6 22
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
63c3hkzP_
not modelled 60.4 43
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
64c5ijlA_
not modelled 59.9 22
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
65c6g5iy_
not modelled 59.6 29
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
66c4qiwP_
not modelled 57.4 38
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
67c2hu9B_
not modelled 57.2 46
PDB header:metal transport
Chain: B: PDB Molecule:mercuric transport protein periplasmic component;
PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain
68c6hmsB_
not modelled 57.2 22
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
69d1g2ra_
not modelled 53.3 12
Fold:YlxR-like
Superfamily:YlxR-like
Family:YlxR-like
70c1x6eA_
not modelled 52.8 23
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger protein 24;
PDBTitle: solution structures of the c2h2 type zinc finger domain of2 human zinc finger protein 24
71d1x3za1
not modelled 52.7 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
72c2l7xA_
not modelled 52.3 44
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: crimean congo hemorrhagic fever gn zinc finger
73d1qzxa1
not modelled 51.9 10
Fold:Four-helical up-and-down bundle
Superfamily:Domain of the SRP/SRP receptor G-proteins
Family:Domain of the SRP/SRP receptor G-proteins
74c3eswA_
not modelled 51.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
75c6iieA_
not modelled 51.1 18
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase alpha;
PDBTitle: crystal structure of human diacylglycerol kinase alpha ef-hand domains2 bound to ca2+
76d2cona1
not modelled 50.3 19
Fold:Rubredoxin-like
Superfamily:NOB1 zinc finger-like
Family:NOB1 zinc finger-like
77c2f9iD_
not modelled 49.0 18
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
78d1vd4a_
not modelled 49.0 50
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
79c5iy9Q_
not modelled 48.0 50
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
80c3ja82_
not modelled 47.0 17
PDB header:hydrolase
Chain: 2: PDB Molecule:minichromosome maintenance 2;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
81c4kisA_
not modelled 46.6 13
PDB header:recombination/dna
Chain: A: PDB Molecule:putative integrase [bacteriophage a118];
PDBTitle: crystal structure of a lsr-dna complex
82c2aklA_
not modelled 46.2 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
83c3x38B_
not modelled 46.2 8
PDB header:replication regulator
Chain: B: PDB Molecule:mitochondrial morphogenesis protein sld7;
PDBTitle: crystal structure of the c-terminal domain of sld7
84c2jq5A_
not modelled 45.8 30
PDB header:structural genomics
Chain: A: PDB Molecule:sec-c motif;
PDBTitle: solution structure of rpa3114, a sec-c motif containing protein from2 rhodopseudomonas palustris; northeast structural genomics consortium3 target rpt5 / ontario center for structural proteomics target rp3097
85c2cotA_
not modelled 45.3 23
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 435;
PDBTitle: solution structure of the first and second zf-c2h2 domain2 of zinc finger protein 435
86d2f9yb1
not modelled 44.9 21
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
87c2f9yB_
not modelled 44.9 21
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
88c2kvfA_
not modelled 44.7 60
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
89c6ny5A_
not modelled 44.4 19
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:pumilio domain-containing protein c56f2.08c;
PDBTitle: crystal structure of the pum-hd domain of s. pombe puf1 in complex2 with rna
90c3u5cf_
not modelled 44.2 44
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s5;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
91c4uer9_
not modelled 44.2 44
PDB header:translation
Chain: 9: PDB Molecule:es31;
PDBTitle: 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri
92c4byt5_
not modelled 44.2 44
PDB header:ribosome
Chain: 5: PDB Molecule:ubiquitin-40s ribosomal protein s31;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
93c4byl5_
not modelled 44.2 44
PDB header:ribosome
Chain: 5: PDB Molecule:ubiquitin-40s ribosomal protein s31;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
94c2lk1A_
not modelled 43.9 37
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
95c2lk0A_
not modelled 43.0 37
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
96c1meyG_
not modelled 42.8 55
PDB header:transferase/dna
Chain: G: PDB Molecule:consensus zinc finger;
PDBTitle: crystal structure of a designed zinc finger protein bound2 to dna
97c6o3pA_
not modelled 42.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
98c2ctdA_
not modelled 42.3 18
PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 512;
PDBTitle: solution structure of two zf-c2h2 domains from human zinc2 finger protein 512
99c5fywW_
not modelled 42.0 42
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
100c2jneA_
not modelled 41.9 44
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein yfgj;
PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound. northeast2 structural genomics consortium target er317.
101d2jnea1
not modelled 41.9 44
Fold:Rubredoxin-like
Superfamily:YfgJ-like
Family:YfgJ-like
102d1x6ea2
not modelled 41.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
103c2kwqA_
not modelled 41.2 24
PDB header:dna binding protein
Chain: A: PDB Molecule:protein mcm10 homolog;
PDBTitle: mcm10 c-terminal dna binding domain
104c2lvuA_
not modelled 40.8 63
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 10
105d1a1ia2
not modelled 40.6 40
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
106c4cuyf_
not modelled 40.5 38
PDB header:ribosome
Chain: F: PDB Molecule:us7;
PDBTitle: kluyveromyces lactis 80s ribosome in complex with crpv-ires
107d2cota1
not modelled 40.5 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
108c5fmfR_
not modelled 40.4 42
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex
109c3u5gf_
not modelled 40.2 44
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s5;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
110d1m2ka_
not modelled 40.1 17
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
111c4esjA_
not modelled 40.1 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna
112c4pogC_
not modelled 40.0 19
PDB header:replication, dna binding protein/dna
Chain: C: PDB Molecule:cell division control protein 21;
PDBTitle: mcm-ssdna co-crystal structure
113c2kaeA_
not modelled 40.0 19
PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
114c3hi2C_
not modelled 39.8 57
PDB header:dna binding protein/toxin
Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit);
PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022)
115c2js4A_
not modelled 39.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0434 protein bb2007;
PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54
116c5aaqA_
not modelled 39.7 29
PDB header:calcium-binding protein
Chain: A: PDB Molecule:calcium-binding and coiled-coil domain-containing protein
PDBTitle: tbk1 recruitment to cytosol-invading salmonella induces2 anti-bacterial autophagy
117d1llmc2
not modelled 38.6 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
118d2dula1
not modelled 38.2 11
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
119d2j0151
not modelled 38.1 38
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
120c1jocA_
not modelled 38.0 40
PDB header:membrane protein
Chain: A: PDB Molecule:early endosomal autoantigen 1;
PDBTitle: eea1 homodimer of c-terminal fyve domain bound to inositol2 1,3-diphosphate

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite