Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2719c_(-)_3031050_3031547
DateWed Aug 7 12:50:37 BST 2019
Unique Job ID0ee5a811d53f1f9c
SequenceMTPVRPPHTP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.266 Y:32.647 Z:58.749
Model (left) based on template c5jceA_
Top template information
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin elicitor-binding protein;
PDBTitle: crystal structure of oscebip complex
Confidence and coverage
Confidence: 99.9% Coverage: 65%
108 residues ( 65% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 56% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5jceA_
99.9 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitin elicitor-binding protein;
PDBTitle: crystal structure of oscebip complex
2c5ls2B_
99.8 11
PDB header:plant protein
Chain: B: PDB Molecule:lysm type receptor kinase;
PDBTitle: receptor mediated chitin perception in legumes is functionally2 seperable from nod factor perception
3c4uz2D_
99.7 24
PDB header:hydrolase
Chain: D: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the n-terminal lysm domains from the putative2 nlpc/p60 d,l endopeptidase from t. thermophilus
4c4b9hA_
99.7 22
PDB header:sugar binding protein
Chain: A: PDB Molecule:extracellular protein 6;
PDBTitle: cladosporium fulvum lysm effector ecp6 in complex with a2 beta-1,4-linked n-acetyl-d-glucosamine tetramer: i3c heavy3 atom derivative
5c4ebzA_
99.7 11
PDB header:transferase
Chain: A: PDB Molecule:chitin elicitor receptor kinase 1;
PDBTitle: crystal structure of the ectodomain of a receptor like kinase
6c4s3kA_
99.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:spore germination protein yaah;
PDBTitle: crystal structure of the bacillus megaterium qm b1551 spore cortex-2 lytic enzyme slel
7c4s3jC_
99.7 21
PDB header:hydrolase
Chain: C: PDB Molecule:cortical-lytic enzyme;
PDBTitle: crystal structure of the bacillus cereus spore cortex-lytic enzyme2 slel
8c2l9yA_
99.6 21
PDB header:sugar binding protein
Chain: A: PDB Molecule:cvnh-lysm lectin;
PDBTitle: solution structure of the mocvnh-lysm module from the rice blast2 fungus magnaporthe oryzae protein (mgg_03307)
9c5fimA_
99.6 26
PDB header:unknown function
Chain: A: PDB Molecule:ygau;
PDBTitle: the structure of kbp.k from e. coli
10c2mkxA_
99.5 27
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: solution structure of lysm the peptidoglycan binding domain of2 autolysin atla from enterococcus faecalis
11c2djpA_
99.5 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein sb145;
PDBTitle: the solution structure of the lysm domain of human2 hypothetical protein sb145
12c5k2lA_
99.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase, lysozyme;
PDBTitle: crystal structure of lysm domain from volvox carteri chitinase
13d1e0ga_
99.4 30
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
14d1y7ma2
99.4 23
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
15c4pxvC_
99.2 13
PDB header:sugar binding protein
Chain: C: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from pteris ryukyuensis chitinase a
16c5bumA_
99.2 20
PDB header:sugar binding protein
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal structure of lysm domain from equisetum arvense chitinase a
17c4xcmB_
99.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:cell wall-binding endopeptidase-related protein;
PDBTitle: crystal structure of the putative nlpc/p60 d,l endopeptidase from t.2 thermophilus
18c6raoG_
98.7 26
PDB header:virus like particle
Chain: G: PDB Molecule:afp7;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised
19c3sluB_
98.4 25
PDB header:hydrolase
Chain: B: PDB Molecule:m23 peptidase domain protein;
PDBTitle: crystal structure of nmb0315
20c4lzhA_
97.3 16
PDB header:transferase
Chain: A: PDB Molecule:l,d-transpeptidase;
PDBTitle: l,d-transpeptidase from klebsiella pneumoniae
21c2ltfA_
not modelled 94.3 26
PDB header:viral protein
Chain: A: PDB Molecule:tail protein x;
PDBTitle: the solution structure of phage p2 gpx
22c2gu1A_
not modelled 88.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
23c1y7mB_
not modelled 82.8 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein bsu14040;
PDBTitle: crystal structure of the b. subtilis ykud protein at 2 a2 resolution
24c2mpwA_
not modelled 78.6 31
PDB header:peptidoglycan binding protein
Chain: A: PDB Molecule:intimin;
PDBTitle: solution structure of the lysm region of the e. coli intimin2 periplasmic domain
25d1y0pa3
not modelled 32.2 14
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
26c2elhA_
not modelled 30.5 23
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
27c2k5eA_
not modelled 22.3 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
28c2lfcA_
not modelled 22.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit;
PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j
29c2k53A_
not modelled 22.0 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a3dk08 protein;
PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9
30d1d4ca3
not modelled 20.9 21
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
31d2gqba1
not modelled 20.5 11
Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like
32d1iyjb3
not modelled 11.6 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
33c4itkA_
not modelled 10.6 24
PDB header:electron transport
Chain: A: PDB Molecule:apoferredoxin;
PDBTitle: the structure of c.reinhardtii ferredoxin 2
34c1rr7A_
not modelled 10.6 19
PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
35d1rr7a_
not modelled 10.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
36d2fug33
not modelled 10.5 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
37c6bxwA_
not modelled 10.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial association factor 1;
PDBTitle: crystal structure of toxoplasma gondii mitochondrial association2 factor 1 b (maf1b) in complex with adpribose
38c5u57B_
not modelled 10.2 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:(s)-2-hydroxypropylphosphonic acid epoxidase;
PDBTitle: psf4 in complex with fe2+ and (s)-2-hpp
39d2cx1a1
not modelled 10.0 33
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
40c5vobE_
not modelled 9.8 15
PDB header:viral protein/immune system
Chain: E: PDB Molecule:envelope glycoprotein ul131a;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 8i21
41c2r0qF_
not modelled 9.5 37
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
42d2piaa3
not modelled 9.0 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
43d1wi9a_
not modelled 8.8 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PCI domain (PINT motif)
44c3k3nA_
not modelled 8.7 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:phd finger protein 8;
PDBTitle: crystal structure of the catalytic core domain of human phf8
45d1bw6a_
not modelled 8.3 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
46c4xalA_
not modelled 8.1 31
PDB header:viral protein
Chain: A: PDB Molecule:tegument protein vp22;
PDBTitle: crystal structure of the conserved core domain of vp22 from hsv-1
47d1miua3
not modelled 7.9 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
48c3pu3A_
not modelled 6.7 50
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 2;
PDBTitle: phf2 jumonji domain-nog complex
49c2y5cB_
not modelled 6.6 19
PDB header:electron transport
Chain: B: PDB Molecule:adrenodoxin-like protein, mitochondrial;
PDBTitle: structure of human ferredoxin 2 (fdx2)in complex with 2fe2s2 cluster
50c3kvaA_
not modelled 6.6 42
PDB header:h3k4me3 binding protein, transferase
Chain: A: PDB Molecule:jmjc domain-containing histone demethylation protein 1d;
PDBTitle: structure of kiaa1718 jumonji domain in complex with alpha-2 ketoglutarate
51d2bt6a1
not modelled 6.6 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
52c4iiwB_
not modelled 6.4 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lmo1499 protein;
PDBTitle: 2.6 angstrom crystal structure of putative yceg-like protein lmo14992 from listeria monocytogenes
53d3c8ya2
not modelled 6.4 5
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
54c2mjdA_
not modelled 6.2 22
PDB header:metal binding protein
Chain: A: PDB Molecule:adrenodoxin homolog, mitochondrial;
PDBTitle: oxidized yeast adrenodoxin homolog 1
55d1qo8a3
not modelled 6.2 14
Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
56d1qora1
not modelled 6.1 14
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
57d1i7ha_
not modelled 6.0 33
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
58c2lvsA_
not modelled 6.0 20
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: nmr solution structure of a crispr repeat binding protein
59c2auwB_
not modelled 5.6 17
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
60c3p1mG_
not modelled 5.4 23
PDB header:electron transport
Chain: G: PDB Molecule:adrenodoxin, mitochondrial;
PDBTitle: crystal structure of human ferredoxin-1 (fdx1) in complex with iron-2 sulfur cluster
61c3fmcC_
not modelled 5.2 23
PDB header:hydrolase
Chain: C: PDB Molecule:putative succinylglutamate desuccinylase / aspartoacylase;
PDBTitle: crystal structure of a putative succinylglutamate desuccinylase /2 aspartoacylase family protein (sama_0604) from shewanella amazonensis3 sb2b at 1.80 a resolution
62c3d79A_
not modelled 5.1 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein ph0734;
PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below