Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2728c_(-)_3040776_3041471
DateWed Aug 7 12:50:38 BST 2019
Unique Job ID2aa675c51da89447
SequenceVLSAIGIVPS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.512 Y:47.000 Z:45.973
Model (left) based on template c3vsjB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-amino-5-chlorophenol 1,6-dioxygenase beta subunit;
PDBTitle: crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
Confidence and coverage
Confidence:100.0% Coverage: 99%
229 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3vsjB_



100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-amino-5-chlorophenol 1,6-dioxygenase beta subunit;
PDBTitle: crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
2c3vsjA_



100.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit;
PDBTitle: crystal structure of 1,6-apd (2-animophenol-1,6-dioxygenase) complexed2 with intermediate products
3d1b4ub_



100.0 12
Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
4c3wrbB_



100.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:gallate dioxygenase;
PDBTitle: crystal structure of the anaerobic h124f desb-gallate complex
5c3bd0D_



99.9 15
PDB header:peptide binding protein
Chain: D: PDB Molecule:protein memo1;
PDBTitle: crystal structure of memo, form ii
6d2pw6a1



99.8 12
Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
7d1a73a_



22.8 30
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Intron-encoded homing endonucleases
8c3wrwE_



22.6 14
PDB header:transferase
Chain: E: PDB Molecule:tm-1 protein;
PDBTitle: crystal structure of the n-terminal domain of resistance protein
9c4uplC_



19.1 24
PDB header:hydrolase
Chain: C: PDB Molecule:sulfatase family protein;
PDBTitle: dimeric sulfatase spas2 from silicibacter pomeroyi
10d1y6va1



11.8 18
Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Alkaline phosphatase
11c4s1nA_



11.7 23
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: the crystal structure of phosphoribosylglycinamide formyltransferase2 from streptococcus pneumoniae tigr4
12c5c2gD_



11.4 10
PDB header:lyase
Chain: D: PDB Molecule:form ii rubisco;
PDBTitle: gws1b rubisco: form ii rubisco derived from uncultivated2 gallionellacea species (cabp-bound).
13c2rusB_



10.2 11
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:rubisco (ribulose-1,5-bisphosphate carboxylase(slash)
PDBTitle: crystal structure of the ternary complex of ribulose-1,5-bisphosphate2 carboxylase, mg(ii), and activator co2 at 2.3-angstroms resolution
14c9rubB_



9.7 11
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase;
PDBTitle: crystal structure of activated ribulose-1,5-bisphosphate carboxylase2 complexed with its substrate, ribulose-1,5-bisphosphate
15d1ac5a_



9.6 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Serine carboxypeptidase-like
16d2ihta3



9.4 19
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
17d5ruba1



9.2 11
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
18c6b1vB_



8.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:iota-carrageenan sulfatase;
PDBTitle: crystal structure of ps i-cgsb c78s in complex with i-neocarratetraose
19c1gxsC_



7.8 36
PDB header:lyase
Chain: C: PDB Molecule:p-(s)-hydroxymandelonitrile lyase chain a;
PDBTitle: crystal structure of hydroxynitrile lyase from sorghum2 bicolor in complex with inhibitor benzoic acid: a novel3 cyanogenic enzyme
20c3p9xB_



7.7 15
PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans
21c4az3A_



not modelled 7.5 40
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal protective protein 32 kda chain;
PDBTitle: crystal structure of cathepsin a, complexed with 15a
22c1bcrA_



not modelled 7.3 36
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:serine carboxypeptidase ii;
PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature
23c3uebD_



not modelled 7.2 9
PDB header:unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ton_0450 from thermococcus onnurineus na1
24c3a52A_



not modelled 7.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:cold-active alkaline phosphatase;
PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp.
25d1wpxa1



not modelled 6.9 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Serine carboxypeptidase-like
26c5macD_



not modelled 6.8 13
PDB header:lyase
Chain: D: PDB Molecule:ribulose-1,5-bisphosphate carboxylase-oxygenase type iii;
PDBTitle: crystal structure of decameric methanococcoides burtonii rubisco2 complexed with 2-carboxyarabinitol bisphosphate
27c2x9qA_



not modelled 6.5 8
PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
28d1ovma3



not modelled 6.4 19
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
29c2qygC_



not modelled 6.0 11
PDB header:unknown function
Chain: C: PDB Molecule:ribulose bisphosphate carboxylase-like protein 2;
PDBTitle: crystal structure of a rubisco-like protein rlp2 from rhodopseudomonas2 palustris
30d1rbla1



not modelled 5.2 15
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
31d1q5qa_



not modelled 5.2 15
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
32c1q5rD_



not modelled 5.2 15
PDB header:hydrolase
Chain: D: PDB Molecule:proteasome alpha-type subunit 1;
PDBTitle: the rhodococcus 20s proteasome with unprocessed pro-peptides
33d1nvpd1



not modelled 5.2 23
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
34d1geha1



not modelled 5.1 11
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
35d2djia3



not modelled 5.1 27
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Pyruvate oxidase and decarboxylase PP module
36c2rm8A_



not modelled 5.1 13
PDB header:signaling protein
Chain: A: PDB Molecule:sensory rhodopsin ii transducer;
PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis

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