Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2731_(-)_3043036_3044388
DateWed Aug 7 12:50:38 BST 2019
Unique Job ID6c1a63ac67253657
SequenceMTADEPRSDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:92.207 Y:74.627 Z:90.926
Model (left) based on template c5ew5C_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
Confidence and coverage
Confidence: 96.1% Coverage: 49%
222 residues ( 49% of your sequence) have been modelled with 96.1% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
431 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ew5C_
96.1 9
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
2c4cgkA_
95.8 8
PDB header:cell cycle
Chain: A: PDB Molecule:secreted 45 kda protein;
PDBTitle: crystal structure of the essential protein pcsb from streptococcus2 pneumoniae
3c1ciiA_
95.1 11
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
4c4xa3A_
88.5 9
PDB header:motor protein
Chain: A: PDB Molecule:gp7-myh7(1361-1425)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 2 of myh7
5c6gapB_
87.4 7
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
6c1c1gA_
86.5 11
PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution in the2 spermine-induced crystal form
7c6ewyA_
84.3 10
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
8c3ghgK_
83.2 5
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
9c5yz0C_
81.2 15
PDB header:cell cycle
Chain: C: PDB Molecule:atr-interacting protein;
PDBTitle: cryo-em structure of human atr-atrip complex
10c1bg1A_
79.3 10
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
11c1deqO_
77.6 3
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
12c5yz0D_
77.0 20
PDB header:cell cycle
Chain: D: PDB Molecule:atr-interacting protein;
PDBTitle: cryo-em structure of human atr-atrip complex
13c3ojaB_
76.2 10
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
14c2v71A_
76.2 8
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel
15c1bf5A_
75.7 10
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
16c1deqF_
74.8 9
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
17c3wuqA_
74.8 6
PDB header:motor protein
Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1;
PDBTitle: structure of the entire stalk region of the dynein motor domain
18c1ei3E_
74.4 8
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
19c6gaoC_
72.5 7
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
20c2d3eD_
71.1 13
PDB header:contractile protein
Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal fragment of rabbit skeletal alpha-2 tropomyosin
21c1jchC_
not modelled 68.0 9
PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
22c1y4cA_
not modelled 67.7 14
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp
23c5xg2A_
not modelled 65.3 11
PDB header:dna binding protein
Chain: A: PDB Molecule:chromosome partition protein smc;
PDBTitle: crystal structure of a coiled-coil segment (residues 345-468 and 694-2 814) of pyrococcus yayanosii smc
24c2fxmB_
not modelled 62.1 11
PDB header:contractile protein
Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform;
PDBTitle: structure of the human beta-myosin s2 fragment
25c2efrB_
not modelled 60.0 11
PDB header:contractile protein
Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
26c6gajA_
not modelled 59.3 8
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
27c3cvfA_
not modelled 56.6 15
PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
28c4ll8E_
not modelled 54.9 7
PDB header:motor protein/transport protein
Chain: E: PDB Molecule:swi5-dependent ho expression protein 3;
PDBTitle: complex of carboxy terminal domain of myo4p and she3p middle fragment
29c6djlE_
not modelled 48.9 10
PDB header:signaling protein/protein transport
Chain: E: PDB Molecule:sh3 domain-binding protein 5;
PDBTitle: crystal structure of the rab11 gef sh3bp5 bound to nucleotide free2 rab11a
30c3o0zD_
not modelled 45.2 6
PDB header:transferase
Chain: D: PDB Molecule:rho-associated protein kinase 1;
PDBTitle: crystal structure of a coiled-coil domain from human rock i
31c4xa1D_
not modelled 44.7 11
PDB header:motor protein
Chain: D: PDB Molecule:gp7-myh7(1173-1238)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 1 of myh7
32c4nl6C_
not modelled 43.7 19
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
33c3cwgA_
not modelled 43.7 11
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
34c5wjbA_
not modelled 43.1 10
PDB header:actin/dna binding protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7;
PDBTitle: crystal structure of amino acids 1733-1797 of human beta cardiac2 myosin fused to gp7
35c6ec0A_
not modelled 42.8 6
PDB header:protein fibril
Chain: A: PDB Molecule:keratin 1;
PDBTitle: crystal structure of the wild-type heterocomplex between coil 1b2 domains of human intermediate filament proteins keratin 1 (krt1) and3 keratin 10 (krt10)
36c3dtpA_
not modelled 41.8 10
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and cardiac muscle;
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to tarantula2 muscle thick filament cryo-em 3d-map
37d1wp1a_
not modelled 41.8 17
Fold:Outer membrane efflux proteins (OEP)
Superfamily:Outer membrane efflux proteins (OEP)
Family:Outer membrane efflux proteins (OEP)
38c5ijnF_
not modelled 41.3 9
PDB header:transport protein
Chain: F: PDB Molecule:nuclear pore complex protein nup54;
PDBTitle: composite structure of the inner ring of the human nuclear pore2 complex (32 copies of nup205)
39c4zryA_
not modelled 38.8 11
PDB header:protein fibril
Chain: A: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between coil 2b domains of2 human intermediate filament proteins keratin 1 (krt1) and keratin 103 (krt10)
40c6mi3A_
not modelled 37.1 9
PDB header:transcription
Chain: A: PDB Molecule:nf-kb essential modulator,nf-kappa-b essential modulator,
PDBTitle: structure of nemo(51-112) with n- and c-terminal coiled-coil adaptors.
41c3q8tB_
not modelled 36.8 15
PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein
42c3ghgI_
not modelled 34.8 6
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
43c3u59C_
not modelled 34.3 11
PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
44c6e2jB_
not modelled 31.4 5
PDB header:protein fibril
Chain: B: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between human keratin 1 coil 1b2 containing s233l mutation and wild-type human keratin 10 coil 1b
45c4a7fB_
not modelled 30.7 9
PDB header:structural protein/hydrolase
Chain: B: PDB Molecule:tropomyosin 1 alpha;
PDBTitle: structure of the actin-tropomyosin-myosin complex (rigor atm 3)
46c4gkwB_
not modelled 28.8 13
PDB header:structural protein
Chain: B: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: crystal structure of the coiled-coil domain of c. elegans sas-6
47c1ei3C_
not modelled 28.4 6
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
48c2ocyB_
not modelled 25.2 8
PDB header:endocytosis/exocytosis
Chain: B: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: complex of the guanine exchange factor sec2p and the rab gtpase sec4p
49c6a9pD_
not modelled 22.2 13
PDB header:structural protein
Chain: D: PDB Molecule:glial fibrillary acidic protein;
PDBTitle: crystal structure of the human glial fibrillary acidic protein 1b2 domain
50c3cveC_
not modelled 18.6 18
PDB header:signaling protein
Chain: C: PDB Molecule:homer protein homolog 1;
PDBTitle: crystal structure of the carboxy terminus of homer1
51c5cwsJ_
not modelled 18.5 11
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
52c6flnE_
not modelled 18.0 8
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
53c3ojaA_
not modelled 17.7 12
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
54c3ipkA_
not modelled 17.4 13
PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
55c5dfzD_
not modelled 16.9 8
PDB header:transferase
Chain: D: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
56c3ol1A_
not modelled 16.3 10
PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
57c5nnvD_
not modelled 16.0 6
PDB header:cell cycle
Chain: D: PDB Molecule:chromosome partition protein smc,chromosome partition
PDBTitle: structure of a bacillus subtilis smc coiled coil middle fragment
58c6ianA_
not modelled 15.7 9
PDB header:cytosolic protein
Chain: A: PDB Molecule:intraflagellar transport protein 74;
PDBTitle: t. brucei ift22/74/81 gtp-bound crystal structure
59c5nenB_
not modelled 14.4 10
PDB header:hydrolase
Chain: B: PDB Molecule:lipase c;
PDBTitle: crystal structure of the soluble domain of lipc, a membrane fusion2 protein of a type i secretion system
60c4cg4D_
not modelled 14.0 9
PDB header:actin-binding protein
Chain: D: PDB Molecule:pyrin;
PDBTitle: crystal structure of the chs-b30.2 domains of trim20
61c5nmoA_
not modelled 13.7 13
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein smc,chromosome partition
PDBTitle: structure of the bacillus subtilis smc joint domain
62c5cwsC_
not modelled 13.5 7
PDB header:protein transport
Chain: C: PDB Molecule:nucleoporin nsp1;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
63d1j8ca_
not modelled 13.2 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
64c4iloA_
not modelled 12.8 3
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
65c2miiA_
not modelled 12.0 20
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
66c3hnwB_
not modelled 11.7 6
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
67c2b9cA_
not modelled 11.4 10
PDB header:contractile protein
Chain: A: PDB Molecule:striated-muscle alpha tropomyosin;
PDBTitle: structure of tropomyosin's mid-region: bending and binding sites for2 actin
68c5tbyA_
not modelled 11.4 9
PDB header:contractile protein
Chain: A: PDB Molecule:myosin-7;
PDBTitle: human beta cardiac heavy meromyosin interacting-heads motif obtained2 by homology modeling (using swiss-model) of human sequence from3 aphonopelma homology model (pdb-3jbh), rigidly fitted to human beta-4 cardiac negatively stained thick filament 3d-reconstruction (emd-5 2240)
69c5oi7A_
not modelled 10.8 10
PDB header:protein binding
Chain: A: PDB Molecule:centrosomal protein of 85 kda;
PDBTitle: human cep85 - coiled coil domain 4
70c2kogA_
not modelled 10.6 14
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
71c4wheA_
not modelled 10.2 14
PDB header:signaling protein
Chain: A: PDB Molecule:phage shock protein a;
PDBTitle: crystal structure of e. coli phage shock protein a (pspa 1-144)
72c4rfxA_
not modelled 10.0 10
PDB header:protein transport
Chain: A: PDB Molecule:dynactin subunit 1;
PDBTitle: crystal structure of the dynactin dctn1 fragment involved in dynein2 interaction
73c1cagA_
not modelled 9.9 58
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
74c2gl2B_
not modelled 9.9 8
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
75c1cagC_
not modelled 9.9 58
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
76c5fv8B_
not modelled 9.8 22
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
77c3na7A_
not modelled 9.7 11
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
78c5fv8A_
not modelled 9.7 22
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
79d2gqba1
not modelled 9.6 24
Fold:RPA2825-like
Superfamily:RPA2825-like
Family:RPA2825-like
80c2oevA_
not modelled 9.5 9
PDB header:protein transport
Chain: A: PDB Molecule:programmed cell death 6-interacting protein;
PDBTitle: crystal structure of alix/aip1
81c4pxjB_
not modelled 9.2 21
PDB header:protein binding
Chain: B: PDB Molecule:c-jun-amino-terminal kinase-interacting protein 3;
PDBTitle: crystallographic structure of the lzii fragment (anti-parallel2 orientation) from jip3
82c1cgdC_
not modelled 9.2 55
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
83c1cagB_
not modelled 9.2 55
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
84c1cgdB_
not modelled 9.2 55
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
85c1cgdA_
not modelled 9.2 55
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
86c5cj1B_
not modelled 9.1 10
PDB header:motor protein
Chain: B: PDB Molecule:gp7-myh7-(1526-1571) chimera protein;
PDBTitle: crystal structure of the coiled coil of myh7 residues 1526 to 15712 fused to gp7
87c3jbhA_
not modelled 9.0 8
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
88c3iynQ_
not modelled 9.0 8
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
89c4a55B_
not modelled 8.9 7
PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108
90c1wt6B_
not modelled 8.5 18
PDB header:transferase
Chain: B: PDB Molecule:myotonin-protein kinase;
PDBTitle: coiled-coil domain of dmpk
91c3a1hF_
not modelled 8.0 38
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
92c5sxpG_
not modelled 7.9 26
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
93c2eqbC_
not modelled 7.6 11
PDB header:endocytosis/exocytosis
Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex
94c5sxpF_
not modelled 7.5 26
PDB header:signaling protein/ligase
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
95c2zv4O_
not modelled 7.4 16
PDB header:structural protein
Chain: O: PDB Molecule:major vault protein;
PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution
96c6h2xA_
not modelled 7.3 9
PDB header:dna binding protein
Chain: A: PDB Molecule:chromosome partition protein mukb,chromosome partition
PDBTitle: mukb coiled-coil elbow from e. coli
97c3a1hA_
not modelled 7.2 40
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
98c5lm2B_
not modelled 7.2 10
PDB header:hydrolase
Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type 23;
PDBTitle: crystal structure of hd-ptp phosphatase
99c3vkhA_
not modelled 7.0 14
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain

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