Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2732c_(-)_3044385_3044999
DateWed Aug 7 12:50:38 BST 2019
Unique Job IDac3c87fcdc25adc2
SequenceMMSHEHDAGD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.136 Y:26.078 Z:14.625
Model (left) based on template c1yaxB_
Top template information
PDB header:transferase, signaling protein
Chain: B: PDB Molecule:virulence sensor protein phoq, sensor domain;
PDBTitle: cystal structure analysis of s.typhimurium phoq sensor domain with2 calcium
Confidence and coverage
Confidence: 54.6% Coverage: 8%
17 residues ( 8% of your sequence) have been modelled with 54.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1yaxB_
54.6 29
PDB header:transferase, signaling protein
Chain: B: PDB Molecule:virulence sensor protein phoq, sensor domain;
PDBTitle: cystal structure analysis of s.typhimurium phoq sensor domain with2 calcium
2d1iwga8
34.9 15
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
3c4pv1H_
31.6 38
PDB header:electron transport/inhibitor
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
4c4i7zH_
31.6 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
5d2e74h1
31.4 38
Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
6c4h0lH_
31.0 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: cytochrome b6f complex crystal structure from mastigocladus laminosus2 with n-side inhibitor nqno
7c2e75H_
31.0 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
8c2e76H_
31.0 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
9c4h13H_
31.0 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from mastigocladus2 laminosus with tds
10c2e74H_
31.0 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
11c4dveA_
30.9 16
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
12d2i5nm1
28.9 17
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
13d1eysm_
28.3 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
14c5yq7L_
27.2 11
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
15c1vf5H_
26.6 38
PDB header:photosynthesis
Chain: H: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
16c4j05A_
25.9 26
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
17c1bhbA_
25.8 18
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy
18c1vf5U_
25.4 38
PDB header:photosynthesis
Chain: U: PDB Molecule:protein pet n;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
19d1q90n_
24.7 29
Fold:Single transmembrane helix
Superfamily:PetN subunit of the cytochrome b6f complex
Family:PetN subunit of the cytochrome b6f complex
20c5yq7M_
24.1 22
PDB header:photosynthesis
Chain: M: PDB Molecule:precursor for m subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
21c5b2gG_
not modelled 22.2 16
PDB header:membrane protein
Chain: G: PDB Molecule:endolysin,claudin-4;
PDBTitle: crystal structure of human claudin-4 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
22d2j8cm1
not modelled 22.0 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
23c3mk7F_
not modelled 21.1 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
24c4h44H_
not modelled 21.1 41
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: 2.70 a cytochrome b6f complex structure from nostoc pcc 7120
25c2zt9H_
not modelled 21.1 41
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120
26c4ogqH_
not modelled 21.1 41
PDB header:electron transport
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: internal lipid architecture of the hetero-oligomeric cytochrome b6f2 complex
27c6gwxA_
not modelled 20.9 26
PDB header:structural protein
Chain: A: PDB Molecule:optimised ppa-tyr;
PDBTitle: stabilising and understanding a miniprotein by rational design.
28d2axtd1
not modelled 20.9 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
29c2d2cU_
not modelled 20.2 38
PDB header:photosynthesis
Chain: U: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from m.2 laminosus
30c2d2cH_
not modelled 20.2 38
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit viii;
PDBTitle: crystal structure of cytochrome b6f complex with dbmib from m.2 laminosus
31d1l9bm_
not modelled 16.1 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
32c2n28A_
not modelled 16.1 13
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
33c6r8fG_
not modelled 15.5 23
PDB header:signaling protein
Chain: G: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
34c6r8fE_
not modelled 15.5 23
PDB header:signaling protein
Chain: E: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
35d2i5nl1
not modelled 15.4 11
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
36c3lt6D_
not modelled 15.3 15
PDB header:cell adhesion
Chain: D: PDB Molecule:adhesin yada;
PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the mutant 4 structure
37c5kzoA_
not modelled 15.0 32
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
38d2j8cl1
not modelled 14.3 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
39c6eznE_
not modelled 12.9 12
PDB header:membrane protein
Chain: E: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
40c4zyoA_
not modelled 12.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
41c3lt7D_
not modelled 11.6 16
PDB header:cell adhesion
Chain: D: PDB Molecule:adhesin yada;
PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure
42d2axta1
not modelled 11.3 15
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
43c6fosI_
not modelled 10.4 26
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: cyanidioschyzon merolae photosystem i
44c3vx8C_
not modelled 10.1 13
PDB header:ligase
Chain: C: PDB Molecule:autophagy-related protein 3;
PDBTitle: crystal structure of arabidopsis thaliana atg7ntd-atg3 complex
45c6nd1D_
not modelled 10.0 21
PDB header:protein transport
Chain: D: PDB Molecule:protein transport protein sbh1;
PDBTitle: cryoem structure of the sec complex from yeast
46c1g6uB_
not modelled 9.9 39
PDB header:de novo protein
Chain: B: PDB Molecule:domain swapped dimer;
PDBTitle: crystal structure of a domain swapped dimer
47c2v51E_
not modelled 9.7 31
PDB header:structural protein/contractile protein
Chain: E: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
48c6h3cC_
not modelled 9.0 23
PDB header:signaling protein
Chain: C: PDB Molecule:brisc and brca1-a complex member 2;
PDBTitle: cryo-em structure of the brisc complex bound to shmt2
49c6nhwA_
not modelled 8.3 27
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
50c6nhwC_
not modelled 8.3 27
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
51c6nhwD_
not modelled 8.3 27
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
52c6nhwB_
not modelled 8.3 27
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
53c4ymkA_
not modelled 8.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
54c2v51F_
not modelled 8.2 31
PDB header:structural protein/contractile protein
Chain: F: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: structure of mal-rpel1 complexed to actin
55d1eysl_
not modelled 8.0 13
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
56c4m48A_
not modelled 7.9 25
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
57c4px7A_
not modelled 7.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatidylglycerophosphatase;
PDBTitle: crystal structure of lipid phosphatase e. coli pgpb
58d1xhmb1
not modelled 7.6 18
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Transducin (heterotrimeric G protein), gamma chain
Family:Transducin (heterotrimeric G protein), gamma chain
59c1xhmB_
not modelled 7.5 18
PDB header:signaling protein
Chain: B: PDB Molecule:guanine nucleotide-binding protein g(i)/g(s)
PDBTitle: the crystal structure of a biologically active peptide2 (sigk) bound to a g protein beta:gamma heterodimer
60c5zgbI_
not modelled 6.9 26
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
61c5eurC_
not modelled 6.8 30
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: hypothetical protein sf216 from shigella flexneri 5a m90t
62d1v54d_
not modelled 6.8 17
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
63c5lc5c_
not modelled 6.6 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class2
64c5ldwc_
not modelled 6.6 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class1
65c2hz8A_
not modelled 6.6 33
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed diiron protein;
PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein
66c1izlJ_
not modelled 6.6 14
PDB header:photosynthesis
Chain: J: PDB Molecule:photosystem ii: subunit psba;
PDBTitle: crystal structure of photosystem ii
67c2kncB_
not modelled 6.5 20
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
68c6nhwF_
not modelled 6.5 27
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
69c2y69Q_
not modelled 6.4 17
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
70c5zghI_
not modelled 6.3 28
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
71c4cgcC_
not modelled 6.2 28
PDB header:cell cycle
Chain: C: PDB Molecule:echinoderm microtubule-associated protein-like 4;
PDBTitle: crystal structure of the trimerization domain of human eml4
72c3j2wE_
not modelled 5.8 37
PDB header:virus
Chain: E: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
73c3j2wH_
not modelled 5.8 37
PDB header:virus
Chain: H: PDB Molecule:glycoprotein e1;
PDBTitle: electron cryo-microscopy of chikungunya virus
74d1g72b_
not modelled 5.7 29
Fold:Non-globular all-alpha subunits of globular proteins
Superfamily:Methanol dehydrogenase subunit
Family:Methanol dehydrogenase subunit
75c2drxA_
not modelled 5.4 55
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
76c5g25A_
not modelled 5.1 29
PDB header:structural protein
Chain: A: PDB Molecule:type-iv like competence pilin ttha1218;
PDBTitle: type iv-like pilin ttha1218 from thermus thermophilus

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below