Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2734_(-)_3046831_3047685
DateWed Aug 7 12:50:39 BST 2019
Unique Job IDea2397f7b55e5698
SequenceMSDRSAIEWT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.043 Y:44.449 Z:47.745
Model (left) based on template c4fheA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:spore photoproduct lyase;
PDBTitle: spore photoproduct lyase c140a mutant
Confidence and coverage
Confidence: 98.1% Coverage: 52%
149 residues ( 52% of your sequence) have been modelled with 98.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4fheA_
98.1 15
PDB header:lyase
Chain: A: PDB Molecule:spore photoproduct lyase;
PDBTitle: spore photoproduct lyase c140a mutant
2c2ad5B_
70.8 13
PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
3c2ywdA_
69.9 18
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of glutamine amidotransferase
4d2a9va1
64.7 13
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
5d1izca_
57.5 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
6c1izcA_
57.5 18
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
7c5h7dI_
47.5 23
PDB header:transferase, immune system/metal binding
Chain: I: PDB Molecule:putrescine aminotransferase,immunoglobulin g-binding
PDBTitle: crystal structure of the ygjg-protein a-zpa963-calmodulin complex
8d1qkia2
47.2 10
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
9c1h9aA_
41.3 28
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
10c2zuuA_
40.8 32
PDB header:transferase
Chain: A: PDB Molecule:lacto-n-biose phosphorylase;
PDBTitle: crystal structure of galacto-n-biose/lacto-n-biose i phosphorylase in2 complex with glcnac
11c3imkA_
40.4 29
PDB header:metal binding protein
Chain: A: PDB Molecule:putative molybdenum carrier protein;
PDBTitle: crystal structure of putative molybdenum carrier protein (yp_461806.1)2 from syntrophus aciditrophicus sb at 1.45 a resolution
12d1gk8a1
40.2 15
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
13c2bhlB_
39.9 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
14d1h9aa2
38.6 26
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
15c3n5mD_
38.3 19
PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase
16d1gsoa2
38.0 39
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
17c3fseB_
37.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:two-domain protein containing dj-1/thij/pfpi-like and
PDBTitle: crystal structure of a two-domain protein containing dj-1/thij/pfpi-2 like and ferritin-like domains (ava_4496) from anabaena variabilis3 atcc 29413 at 1.90 a resolution
18c5ddwD_
34.9 16
PDB header:transferase
Chain: D: PDB Molecule:crmg;
PDBTitle: crystal structure of aminotransferase crmg from actinoalloteichus sp.2 wh1-2216-6 in complex with the pmp external aldimine adduct with3 caerulomycin m
19c2vwtA_
34.3 22
PDB header:lyase
Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase;
PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex
20c3qz6A_
34.3 19
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
21c4e9iB_
not modelled 33.5 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
22c3r5wO_
not modelled 32.3 18
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
23c2yqeA_
not modelled 31.9 20
PDB header:dna binding protein
Chain: A: PDB Molecule:jumonji/arid domain-containing protein 1d;
PDBTitle: solution structure of the arid domain of jarid1d protein
24d1to3a_
not modelled 30.9 11
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
25d1dxea_
not modelled 30.7 24
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
26c1qkiE_
not modelled 28.2 10
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
27c3pdiB_
not modelled 27.4 14
PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
28c5u03C_
not modelled 27.2 16
PDB header:ligase, protein fibril
Chain: C: PDB Molecule:ctp synthase 1;
PDBTitle: cryo-em structure of the human ctp synthase filament
29c3r5zB_
not modelled 27.0 23
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
30c2issF_
not modelled 26.7 18
PDB header:lyase, transferase
Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima
31c5n6yE_
not modelled 26.6 13
PDB header:oxidoreductase
Chain: E: PDB Molecule:nitrogenase vanadium-iron protein beta chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
32c4tv6A_
not modelled 26.3 23
PDB header:lyase
Chain: A: PDB Molecule:2-dehydro-3-deoxyglucarate aldolase;
PDBTitle: crystal structure of citrate synthase variant sbng e151q
33c4e77A_
not modelled 24.7 23
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: 2.0a crystal structure of a glutamate-1-semialdehyde aminotransferase2 from yersinia pestis co92
34c3h96B_
not modelled 24.0 14
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
35c3cneD_
not modelled 23.4 17
PDB header:hydrolase
Chain: D: PDB Molecule:putative protease i;
PDBTitle: crystal structure of the putative protease i from bacteroides2 thetaiotaomicron
36c4a0rB_
not modelled 23.2 23
PDB header:transferase
Chain: B: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate
PDBTitle: structure of bifunctional dapa aminotransferase-dtb synthetase from2 arabidopsis thaliana bound to dethiobiotin (dtb).
37c2zw3B_
not modelled 22.5 50
PDB header:cell adhesion
Chain: B: PDB Molecule:gap junction beta-2 protein;
PDBTitle: structure of the connexin-26 gap junction channel at 3.52 angstrom resolution
38c3bs8A_
not modelled 21.8 26
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate 1-semialdehyde aminotransferase2 complexed with pyridoxamine-5'-phosphate from bacillus subtilis
39d1qh8a_
not modelled 21.3 13
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
40c2ywjA_
not modelled 20.4 16
PDB header:transferase
Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt;
PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii
41d1iloa_
not modelled 20.4 27
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
42c6mhqE_
not modelled 20.2 50
PDB header:membrane protein
Chain: E: PDB Molecule:gap junction alpha-3 protein, connexin-46;
PDBTitle: structure of connexin-46 intercellular gap junction channel at 3.42 angstrom resolution by cryoem
43c3on1A_
not modelled 19.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2414 protein;
PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c
44c5v1tA_
not modelled 19.5 29
PDB header:metal binding protein
Chain: A: PDB Molecule:radical sam;
PDBTitle: crystal structure of streptococcus suis suib bound to precursor2 peptide suia
45d1jqna_
not modelled 19.4 25
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
46c4zdiE_
not modelled 19.3 16
PDB header:ligase
Chain: E: PDB Molecule:ctp synthase;
PDBTitle: crystal structure of the m. tuberculosis ctp synthase pyrg (apo form)
47d1b8ta4
not modelled 19.3 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
48d1wv2a_
not modelled 19.2 21
Fold:TIM beta/alpha-barrel
Superfamily:ThiG-like
Family:ThiG-like
49c4y9iA_
not modelled 19.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
50c3jrkG_
not modelled 18.2 32
PDB header:lyase
Chain: G: PDB Molecule:tagatose 1,6-diphosphate aldolase 2;
PDBTitle: a putative tagatose 1,6-diphosphate aldolase from streptococcus2 pyogenes
51d2nv0a1
not modelled 18.2 19
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
52d1m1na_
not modelled 18.1 15
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
53c2lbwA_
not modelled 17.8 32
PDB header:rna binding protein
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2;
PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant
54c1hyuA_
not modelled 17.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:alkyl hydroperoxide reductase subunit f;
PDBTitle: crystal structure of intact ahpf
55c3p2aB_
not modelled 17.5 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative thioredoxin-like protein;
PDBTitle: crystal structure of thioredoxin 2 from yersinia pestis
56d1jqoa_
not modelled 17.3 35
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
57c1jqoA_
not modelled 17.3 35
PDB header:lyase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize
58c4b5sB_
not modelled 17.3 19
PDB header:lyase
Chain: B: PDB Molecule:4-hydroxy-2-oxo-heptane-1,7-dioate aldolase;
PDBTitle: crystal structures of divalent metal dependent pyruvate aldolase,2 hpai, in complex with pyruvate
59c2v5jB_
not modelled 16.9 15
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
60d2pv7a2
not modelled 16.8 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
61c3hmuA_
not modelled 16.7 17
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a class iii aminotransferase from silicibacter2 pomeroyi
62d1un2a_
not modelled 16.5 56
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
63c3l44A_
not modelled 15.9 25
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1;
PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase
64d1qh8b_
not modelled 15.8 11
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
65d1miob_
not modelled 15.4 19
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
66c2eqyA_
not modelled 15.2 18
PDB header:dna binding protein
Chain: A: PDB Molecule:jumonji, at rich interactive domain 1b;
PDBTitle: solution structure of the arid domain of jarid1b protein
67c4nn7A_
not modelled 15.1 40
PDB header:cytokine/cytokine receptor
Chain: A: PDB Molecule:thymic stromal lymphopoietin;
PDBTitle: cytokine receptor complex - crystal form 2
68d1xb4a1
not modelled 15.1 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
69c1vcnA_
not modelled 14.9 16
PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
70d1xi3a_
not modelled 14.8 13
Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
71d1q7ra_
not modelled 14.7 18
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
72c1vw4W_
not modelled 14.6 29
PDB header:ribosome
Chain: W: PDB Molecule:54s ribosomal protein l32, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
73c3r5yC_
not modelled 14.5 18
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
74d1vlia2
not modelled 14.2 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
75c2ordA_
not modelled 14.2 14
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
76c3aerB_
not modelled 14.1 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
77c3graA_
not modelled 13.8 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, arac family;
PDBTitle: crystal structure of arac family transcriptional regulator from2 pseudomonas putida
78d1mnda2
not modelled 13.5 40
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
79c3dtpA_
not modelled 13.4 40
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and cardiac muscle;
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to tarantula2 muscle thick filament cryo-em 3d-map
80c3jbhA_
not modelled 13.3 40
PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain striated muscle;
PDBTitle: two heavy meromyosin interacting-heads motifs flexible docked into2 tarantula thick filament 3d-map allows in depth study of intra- and3 intermolecular interactions
81c1ni5A_
not modelled 13.2 20
PDB header:cell cycle
Chain: A: PDB Molecule:putative cell cycle protein mesj;
PDBTitle: structure of the mesj pp-atpase from escherichia coli
82c4rjfB_
not modelled 12.7 56
PDB header:replication
Chain: B: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of the human sliding clamp at 2.0 angstrom2 resolution
83c1nj3A_
not modelled 12.7 33
PDB header:protein binding
Chain: A: PDB Molecule:npl4;
PDBTitle: structure and ubiquitin interactions of the conserved nzf domain of2 npl4
84c4rjfD_
not modelled 12.6 56
PDB header:replication
Chain: D: PDB Molecule:cyclin-dependent kinase inhibitor 1;
PDBTitle: crystal structure of the human sliding clamp at 2.0 angstrom2 resolution
85c4atpD_
not modelled 12.6 26
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: structure of gaba-transaminase a1r958 from arthrobacter aurescens in2 complex with plp
86c3ewnA_
not modelled 12.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:thij/pfpi family protein;
PDBTitle: crystal structure of a thij/pfpi family protein from pseudomonas2 syringae
87d1br2a2
not modelled 12.5 40
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
88d1fa2a_
not modelled 12.4 27
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89c1oe9A_
not modelled 12.3 50
PDB header:atpase/myosin
Chain: A: PDB Molecule:myosin va;
PDBTitle: crystal structure of myosin v motor with essential light2 chain - nucleotide-free
90c4qbdC_
not modelled 12.3 40
PDB header:motor protein
Chain: C: PDB Molecule:myosin heavy chain, muscle;
PDBTitle: the first x-ray crystal structure of an insect muscle myosin.2 drosophila melanogaster, skeletal muscle myosin ii, an embryonic3 isoform, subfragment-1
91c2cy8A_
not modelled 12.0 17
PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201
92c4byfA_
not modelled 12.0 50
PDB header:hydrolase
Chain: A: PDB Molecule:unconventional myosin-ic;
PDBTitle: crystal structure of human myosin 1c in complex with2 calmodulin in the pre-power stroke state
93c6nvoA_
not modelled 12.0 15
PDB header:dna binding protein
Chain: A: PDB Molecule:nuclease mpe;
PDBTitle: crystal structure of pseudomonas putida nuclease mpe
94c1ldbA_
not modelled 12.0 16
PDB header:oxidoreductase(choh(d)-nad(a))
Chain: A: PDB Molecule:apo-l-lactate dehydrogenase;
PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase
95c6dueA_
not modelled 12.0 50
PDB header:motor protein
Chain: A: PDB Molecule:myosin a;
PDBTitle: toxoplasma gondii myoa, a class-xiv myosin, in the pre-powerstroke2 state
96d1qdlb_
not modelled 11.9 11
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
97c1w9iA_
not modelled 11.8 40
PDB header:myosin
Chain: A: PDB Molecule:myosin ii heavy chain;
PDBTitle: myosin ii dictyostelium discoideum motor domain s456y bound2 with mgadp-befx
98c2r5rA_
not modelled 11.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0343 protein ne1163;
PDBTitle: the crystal structure of duf198 from nitrosomonas europaea2 atcc 19718
99d1w7ja2
not modelled 11.7 50
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins

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