Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2737c_(recA)_3049062_3051434
DateWed Aug 7 12:50:39 BST 2019
Unique Job ID8b114dc393d4da33
SequenceMTQTPDREKA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:104.417 Y:58.092 Z:81.904
Model (left) based on template c3cmwA_
Top template information
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
Confidence and coverage
Confidence:100.0% Coverage: 79%
627 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
766 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cmwA_
100.0 39
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
2c3cmuA_
100.0 37
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
3c1dq3A_
100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease;
PDBTitle: crystal structure of an archaeal intein-encoded homing2 endonuclease pi-pfui
4c3hr8A_
100.0 65
PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
5c2zroA_
100.0 91
PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
6c3cmvG_
100.0 66
PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
7c2cw8A_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-pkoii;
PDBTitle: crystal structure of intein homing endonuclease ii
8c2recB_
100.0 63
PDB header:helicase
PDB COMPND:
9c1xp8A_
100.0 66
PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: deinococcus radiodurans reca in complex with atp-gamma-s
10d1mo6a1
100.0 99
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
11c1vdeA_
100.0 23
PDB header:endonuclease
Chain: A: PDB Molecule:pi-scei;
PDBTitle: pi-scei, a homing endonuclease with protein splicing2 activity
12d1u94a1
100.0 64
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
13d1ubea1
100.0 90
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
14d1xp8a1
100.0 65
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
15c3io5B_
100.0 23
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
16c2imzA_
100.0 100
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
17d1mi8a_
100.0 42
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
18d1am2a_
99.9 38
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
19c1zd7B_
99.9 39
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803
20c4o1rA_
99.9 43
PDB header:splicing
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of npudnab intein
21c3ldaA_
not modelled 99.9 25
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
22c5jzcG_
not modelled 99.9 23
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad51 homolog 1;
PDBTitle: helical filament
23c2keqA_
not modelled 99.9 36
PDB header:splicing
Chain: A: PDB Molecule:dna polymerase iii alpha subunit, nucleic acid
PDBTitle: solution structure of dnae intein from nostoc punctiforme
24c1t4gA_
not modelled 99.9 25
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
25c2in0A_
not modelled 99.9 100
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
26c2dflA_
not modelled 99.9 27
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
27c1pznA_
not modelled 99.9 24
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
28c5o9jB_
not modelled 99.9 27
PDB header:hydrolase
Chain: B: PDB Molecule:transcription initiation factor iib,transcription
PDBTitle: crystal structure of transcription factor iib mja mini-intein
29c1szpC_
not modelled 99.9 24
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
30d1szpa2
not modelled 99.9 27
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
31d1v5wa_
not modelled 99.9 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
32c2jmzA_
not modelled 99.9 29
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein mj0781;
PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
33d1n0wa_
not modelled 99.9 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
34c4e2uA_
not modelled 99.9 31
PDB header:unknown function
Chain: A: PDB Molecule:pho rada intein;
PDBTitle: crystal structures of radamin intein from pyrococcus horikoshii
35d1pzna2
not modelled 99.9 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
36c2lcjA_
not modelled 99.9 31
PDB header:hydrolase
Chain: A: PDB Molecule:pab polc intein;
PDBTitle: solution nmr structure of pab polii intein
37c2zjbB_
not modelled 99.9 28
PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
38d2i1qa2
not modelled 99.9 27
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
39c4o1sB_
not modelled 99.8 35
PDB header:splicing
Chain: B: PDB Molecule:v-type atp synthase alpha chain;
PDBTitle: crystal structure of tvovma intein
40c1b24A_
not modelled 99.8 19
PDB header:intron-encoded
Chain: A: PDB Molecule:protein (i-dmoi);
PDBTitle: i-dmoi, intron-encoded endonuclease
41d1tf7a2
not modelled 99.8 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
42d1tf7a1
not modelled 99.8 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
43c2cvhB_
not modelled 99.8 23
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair and recombination protein radb;
PDBTitle: crystal structure of the radb recombinase
44c3bh0A_
not modelled 99.8 20
PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
45c2ztsB_
not modelled 99.8 21
PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from hyperthermophilic2 archaea pyrococcus horikoshii ot3
46d1dq3a4
not modelled 99.8 16
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
47c2q6tB_
not modelled 99.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
48c1pznG_
not modelled 99.8 24
PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
49c4nmnA_
not modelled 99.8 16
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: aquifex aeolicus replicative helicase (dnab) complexed with adp, at2 3.3 resolution
50c2vyeA_
not modelled 99.7 18
PDB header:hydrolase/dna
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
51c3bgwD_
not modelled 99.7 18
PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
52c6qelB_
not modelled 99.7 20
PDB header:replication
Chain: B: PDB Molecule:replicative dna helicase;
PDBTitle: e. coli dnabc apo complex
53c1u9iA_
not modelled 99.7 24
PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
54d1dq3a1
not modelled 99.7 47
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
55c6bbmA_
not modelled 99.7 21
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: mechanisms of opening and closing of the bacterial replicative2 helicase: the dnab helicase and lambda p helicase loader complex
56c2w0mA_
not modelled 99.7 26
PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus p2
57c4ydsA_
not modelled 99.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:flagella-related protein h;
PDBTitle: flah from sulfolobus acidocaldarius with atp and mg-ion
58c4wiaA_
not modelled 99.7 19
PDB header:atp-binding protein
Chain: A: PDB Molecule:putative flagella-related protein h;
PDBTitle: crystal structure of flagellar accessory protein flah from2 methanocaldococcus jannaschii
59c4zc0A_
not modelled 99.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: structure of a dodecameric bacterial helicase
60c1q57G_
not modelled 99.7 16
PDB header:transferase
Chain: G: PDB Molecule:dna primase/helicase;
PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
61c4a1fB_
not modelled 99.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of c-terminal domain of helicobacter2 pylori dnab helicase
62d1jvaa3
not modelled 99.7 21
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
63c2dr3A_
not modelled 99.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
64c5ol5B_
not modelled 99.6 24
PDB header:splicing
Chain: B: PDB Molecule:dna polymerase iii subunit alpha,dna polymerase iii subunit
PDBTitle: crystal structure of an inactivated ssp siclopps intein with cfahpq2 extein
65c5jwqA_
not modelled 99.6 28
PDB header:transcription regulator
Chain: A: PDB Molecule:circadian clock protein kinase kaic;
PDBTitle: crystal structure of kaic s431e in complex with foldswitch-stabilized2 kaib from thermosynechococcus elongatus
66c5ol7A_
not modelled 99.6 24
PDB header:splicing
Chain: A: PDB Molecule:dna-directed dna polymerase,dna-directed dna polymerase;
PDBTitle: crystal structure of an inactivated npu siclopps intein with cfahpq2 extein
67c5lkmB_
not modelled 99.5 19
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein rada;
PDBTitle: rada bound to dtdp
68c3bs4A_
not modelled 99.5 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ph0321;
PDBTitle: crystal structure of uncharacterized protein ph0321 from pyrococcus2 horikoshii in complex with an unknown peptide
69d1nlfa_
not modelled 99.5 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
70d1at0a_
not modelled 99.5 18
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Hedgehog C-terminal (Hog) autoprocessing domain
71d1cr2a_
not modelled 99.4 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
72c2lwyA_
not modelled 99.3 29
PDB header:unknown function
Chain: A: PDB Molecule:bacterial intein-like domain;
PDBTitle: solution structure of bacterial intein-like domain from clostridium2 thermocellum
73c6bs8C_
not modelled 99.2 27
PDB header:hydrolase
Chain: C: PDB Molecule:replicative dna helicase;
PDBTitle: the class 3 dnab intein from mycobacterium smegmatis
74c3hyiA_
not modelled 99.0 18
PDB header:transcription regulator
Chain: A: PDB Molecule:protein duf199/whia;
PDBTitle: crystal structure of full-length duf199/whia from thermatoga maritima
75c3hyjD_
not modelled 98.6 14
PDB header:transcription regulator
Chain: D: PDB Molecule:protein duf199/whia;
PDBTitle: crystal structure of the n-terminal laglidadg domain of duf199/whia
76d1oa8a_
not modelled 98.6 21
Fold:AXH domain
Superfamily:AXH domain
Family:AXH domain
77d1mo6a2
not modelled 98.3 100
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
78c1r7mA_
not modelled 98.3 16
PDB header:hydrolase/dna
Chain: A: PDB Molecule:intron-encoded endonuclease i-scei;
PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region
79d1ubea2
not modelled 98.2 87
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
80c2cnwF_
not modelled 98.2 16
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
81c2og2A_
not modelled 98.1 16
PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
82c4ak9A_
not modelled 98.1 18
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
83d1skyb3
not modelled 98.1 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
84c2q9cA_
not modelled 98.0 16
PDB header:signaling protein
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of ftsy:gmppnp with mgcl complex
85c3b9qA_
not modelled 98.0 18
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
86c6epdM_
not modelled 97.9 23
PDB header:hydrolase
Chain: M: PDB Molecule:26s proteasome regulatory subunit 6a;
PDBTitle: substrate processing state 26s proteasome (sps1)
87c1skyE_
not modelled 97.9 19
PDB header:atp synthase
Chain: E: PDB Molecule:f1-atpase;
PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3
88c2yhsA_
not modelled 97.9 16
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
89c3oaaC_
not modelled 97.9 21
PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
90c2qe7C_
not modelled 97.9 19
PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
91c6focD_
not modelled 97.9 23
PDB header:hydrolase
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: f1-atpase from mycobacterium smegmatis
92c4xd7B_
not modelled 97.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of thermophilic f1-atpase inhibited by epsilon subunit
93d1u94a2
not modelled 97.9 53
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
94c3fkqA_
not modelled 97.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
95d2jdid3
not modelled 97.9 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
96c4b4tH_
not modelled 97.9 17
PDB header:hydrolase
Chain: H: PDB Molecule:26s protease regulatory subunit 7 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
97c6f5dE_
not modelled 97.9 24
PDB header:hydrolase
Chain: E: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: trypanosoma brucei f1-atpase
98c6cy1B_
not modelled 97.9 15
PDB header:signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: crystal structure of signal recognition particle receptor ftsy from2 elizabethkingia anophelis
99c2iy3A_
not modelled 97.9 23
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein,signal recognition
PDBTitle: structure of the e. coli signal regognition particle
100d1skye3
not modelled 97.9 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
101c4b4tI_
not modelled 97.9 18
PDB header:hydrolase
Chain: I: PDB Molecule:26s protease regulatory subunit 4 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
102c5mpaL_
not modelled 97.8 25
PDB header:hydrolase
Chain: L: PDB Molecule:26s protease subunit rpt4;
PDBTitle: 26s proteasome in presence of atp (s2)
103c4b4tJ_
not modelled 97.8 17
PDB header:hydrolase
Chain: J: PDB Molecule:26s protease regulatory subunit 8 homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
104c1vmaA_
not modelled 97.8 18
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
105c2r9vA_
not modelled 97.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution
106c1zu4A_
not modelled 97.8 15
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
107c6rdtY_
not modelled 97.8 22
PDB header:proton transport
Chain: Y: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 composite map
108c5dn6A_
not modelled 97.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: atp synthase from paracoccus denitrificans
109c6q45C_
not modelled 97.8 21
PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: f1-atpase from fusobacterium nucleatum
110c2j7pA_
not modelled 97.8 23
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
111d1fx0a3
not modelled 97.8 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
112c5l3rC_
not modelled 97.8 20
PDB header:protein transport
Chain: C: PDB Molecule:signal recognition particle 54 kda protein, chloroplastic;
PDBTitle: structure of the gtpase heterodimer of chloroplast srp54 and ftsy from2 arabidopsis thaliana
113c4b4tK_
not modelled 97.8 24
PDB header:hydrolase
Chain: K: PDB Molecule:26s protease regulatory subunit 6b homolog;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
114c4b4tL_
not modelled 97.8 24
PDB header:hydrolase
Chain: L: PDB Molecule:26s protease subunit rpt4;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
115d1xpua3
not modelled 97.8 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
116c4b4tM_
not modelled 97.8 20
PDB header:hydrolase
Chain: M: PDB Molecule:26s protease regulatory subunit 6a;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
117c6hecH_
not modelled 97.7 21
PDB header:hydrolase
Chain: H: PDB Molecule:proteasome-activating nucleotidase;
PDBTitle: pan-proteasome in state 4
118d2jdia3
not modelled 97.7 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
119c1s3sA_
not modelled 97.7 24
PDB header:protein binding
Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter
PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
120c5syrA_
not modelled 97.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable atp synthase spal/mxib;
PDBTitle: crystal structure of atpase delta1-79 spa47 r350a

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below