Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2738c_(-)_3051816_3052022
DateWed Aug 7 12:50:39 BST 2019
Unique Job ID8523dddf75c058d2
SequenceMLAGVRLTEF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.266 Y:26.983 Z:22.057
Model (left) based on template c6jx3B_
Top template information
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
Confidence and coverage
Confidence: 51.6% Coverage: 38%
26 residues ( 38% of your sequence) have been modelled with 51.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6jx3B_



51.6 31
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
2d1ecia_



43.6 42
Fold:Ectatomin subunits
Superfamily:Ectatomin subunits
Family:Ectatomin subunits
3c5v1uB_



43.2 28
PDB header:protein binding
Chain: B: PDB Molecule:tbib1;
PDBTitle: tbib1 in complex with the tbia(beta) leader peptide
4c4bx9C_



40.1 25
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 16 homolog;
PDBTitle: human vps33a in complex with a fragment of human vps16
5c6fkgC_



39.6 16
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
6c2nydB_



29.1 8
PDB header:unknown function
Chain: B: PDB Molecule:upf0135 protein sa1388;
PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388
7c2p9xB_



25.6 28
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph0832;
PDBTitle: crystal structure of ph0832 from pyrococcus horikoshii ot3
8c3ctdB_



22.0 32
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative atpase, aaa family;
PDBTitle: crystal structure of a putative aaa family atpase from prochlorococcus2 marinus subsp. pastoris
9c3g2bA_



21.1 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:coenzyme pqq synthesis protein d;
PDBTitle: crystal structure of pqqd from xanthomonas campestris
10c4na3A_



20.6 30
PDB header:transferase
Chain: A: PDB Molecule:polyketide synthase pksj;
PDBTitle: crystal structure of the second ketosynthase from the bacillaene2 polyketide synthase bound to a hexanoyl substrate mimic
11d3ctda1



18.1 32
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
12c6gw6B_



17.5 20
PDB header:toxin
Chain: B: PDB Molecule:xre antitoxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
13c4z37A_



17.1 23
PDB header:transferase
Chain: A: PDB Molecule:putative mixed polyketide synthase/non-ribosomal peptide
PDBTitle: structure of the ketosynthase of module 2 of c0zgq5 (trans-at pks)2 from brevibacillus brevis
14c3twkB_



16.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:formamidopyrimidine-dna glycosylase 1;
PDBTitle: crystal structure of arabidopsis thaliana fpg
15c5erbB_



15.9 31
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase;
PDBTitle: ketosynthase from module 5 of the bacillaene synthase from bacillus2 amyloliquefaciens fzb42
16c4tl2A_



15.3 36
PDB header:transferase
Chain: A: PDB Molecule:at-less polyketide synthase;
PDBTitle: crystal structure of ketosynthase domain from mgsf from streptomyces2 platensis
17c4tktA_



15.1 26
PDB header:transferase
Chain: A: PDB Molecule:at-less polyketide synthase;
PDBTitle: streptomyces platensis isomigrastatin ketosynthase domain mgsf ks6
18c3p9aI_



14.5 38
PDB header:dna binding protein
Chain: I: PDB Molecule:dna-packaging protein gp3;
PDBTitle: an atomic view of the nonameric small terminase subunit of2 bacteriophage p22
19d3bgea1



14.0 37
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
20c3ismC_



13.5 21
PDB header:hydrolase inhibitor/hydrolase
Chain: C: PDB Molecule:cg4930;
PDBTitle: crystal structure of the endog/endogi complex: mechanism of endog2 inhibition
21c4qyrA_



not modelled 13.4 29
PDB header:transferase
Chain: A: PDB Molecule:at-less polyketide synthase;
PDBTitle: streptomyces platensis isomigrastatin ketosynthase domain mgse ks3
22c4b3nA_



not modelled 13.3 19
PDB header:sugar binding protein/ligase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, tripartite motif-
PDBTitle: crystal structure of rhesus trim5alpha pry/spry domain
23d1rd5a_



not modelled 12.9 26
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
24c5e5nD_



not modelled 12.9 29
PDB header:hydrolase
Chain: D: PDB Molecule:polyketide synthase pksl;
PDBTitle: ketosynthase from module 6 of the bacillaene synthase from bacillus2 subtilis 168 (c167s mutant, crystal form 1)
25c3qyxD_



not modelled 12.7 11
PDB header:transcription/dna
Chain: D: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of mycobacterium tuberculosis espr in complex with a2 small dna fragment
26d1ee8a1



not modelled 12.5 13
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
27c5e5nB_



not modelled 12.0 36
PDB header:hydrolase
Chain: B: PDB Molecule:polyketide synthase pksl;
PDBTitle: ketosynthase from module 6 of the bacillaene synthase from bacillus2 subtilis 168 (c167s mutant, crystal form 1)
28c1no3A_



not modelled 11.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:lipoxygenase-3;
PDBTitle: refined structure of soybean lipoxygenase-3 with 4-nitrocatechol at2 2.15 angstrom resolution
29c5b88A_



not modelled 11.5 30
PDB header:rna binding protein
Chain: A: PDB Molecule:atp-dependent rna helicase dead;
PDBTitle: rrm-like domain of dead-box protein, csda
30d1rrha1



not modelled 11.1 18
Fold:Lipoxigenase
Superfamily:Lipoxigenase
Family:Plant lipoxigenases
31c3iz5w_



not modelled 10.5 16
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
32c3izcw_



not modelled 10.4 32
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
33c6fahD_



not modelled 10.1 15
PDB header:flavoprotein
Chain: D: PDB Molecule:caffeyl-coa reductase-etf complex subunit carc;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
34c5gxtA_



not modelled 9.4 19
PDB header:protein transport
Chain: A: PDB Molecule:maltose-binding periplasmic protein,pigg;
PDBTitle: crystal structure of pigg
35c4a5uA_



not modelled 9.4 21
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:rna replicase polyprotein;
PDBTitle: turnip yellow mosaic virus proteinase and escherichia coli 30s2 ribosomal s15
36c4opeD_



not modelled 9.3 34
PDB header:ligase, transferase
Chain: D: PDB Molecule:nrps/pks;
PDBTitle: streptomcyes albus ja3453 oxazolomycin ketosynthase domain ozmh ks7
37c4wviA_



not modelled 8.6 26
PDB header:hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein,signal peptidase ib;
PDBTitle: crystal structure of the type-i signal peptidase from staphylococcus2 aureus (spsb) in complex with a substrate peptide (pep2).
38c3csgA_



not modelled 8.6 19
PDB header:de novo protein, sugar binding protein
Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion;
PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding protein2 fusion complex
39c4wkyB_



not modelled 8.4 17
PDB header:transferase
Chain: B: PDB Molecule:beta-ketoacyl synthase;
PDBTitle: streptomcyes albus ja3453 oxazolomycin ketosynthase domain ozmn ks2
40c5sxyA_



not modelled 8.2 8
PDB header:chaperone
Chain: A: PDB Molecule:bifunctional coenzyme pqq synthesis protein c/d;
PDBTitle: the solution nmr structure for the pqqd truncation of methylobacterium2 extorquens pqqcd representing a functional and stand-alone3 ribosomally synthesized and post-translational modified (ripp)4 recognition element (rre)
41d2proc1



not modelled 8.1 27
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
42c3hbmA_



not modelled 7.9 5
PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
43d3bula1



not modelled 7.6 21
Fold:Methionine synthase domain-like
Superfamily:Methionine synthase domain
Family:Methionine synthase domain
44d1k82a1



not modelled 7.5 13
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Middle domain of MutM-like DNA repair proteins
45c3p14C_



not modelled 7.5 25
PDB header:isomerase
Chain: C: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans
46c2qw6A_



not modelled 7.5 31
PDB header:hydrolase
Chain: A: PDB Molecule:aaa atpase, central region;
PDBTitle: crystal structure of the c-terminal domain of an aaa atpase from2 enterococcus faecium do
47d2qw6a1



not modelled 7.5 31
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
48c3oaiB_



not modelled 7.4 19
PDB header:membrane protein, cell adhesion
Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0;
PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero
49c3msqC_



not modelled 7.4 7
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
50c6itwA_



not modelled 7.1 11
PDB header:antitoxin
Chain: A: PDB Molecule:type vi immunity protein atu4351;
PDBTitle: crystal structure of atu4351 from agrobacterium tumefaciens
51d2r9ga1



not modelled 7.0 26
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:MgsA/YrvN C-terminal domain-like
52d1d8wa_



not modelled 6.9 30
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:L-rhamnose isomerase
53c6bwqB_



not modelled 6.8 25
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
54c1ty4D_



not modelled 6.7 63
PDB header:apoptosis
Chain: D: PDB Molecule:egg laying defective egl-1, programmed cell death
PDBTitle: crystal structure of a ced-9/egl-1 complex
55c2joiA_



not modelled 6.7 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0095;
PDBTitle: nmr solution structure of hypothetical protein ta0095 from2 thermoplasma acidophilum
56d1nmpa_



not modelled 6.7 18
Fold:NIF3 (NGG1p interacting factor 3)-like
Superfamily:NIF3 (NGG1p interacting factor 3)-like
Family:NIF3 (NGG1p interacting factor 3)-like
57c3gx4X_



not modelled 6.6 40
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:alkyltransferase-like protein 1;
PDBTitle: crystal structure analysis of s. pombe atl in complex with dna
58d1mwwa_



not modelled 6.6 17
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:Hypothetical protein HI1388.1
59d1u0bb1



not modelled 6.5 25
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
60c1ty4C_



not modelled 6.4 63
PDB header:apoptosis
Chain: C: PDB Molecule:egg laying defective egl-1, programmed cell death
PDBTitle: crystal structure of a ced-9/egl-1 complex
61c4kmoB_



not modelled 6.3 17
PDB header:transport protein
Chain: B: PDB Molecule:putative vacuolar protein sorting-associated protein;
PDBTitle: crystal structure of the vps33-vps16 hops subcomplex from chaetomium2 thermophilum
62d1nvma1



not modelled 6.3 16
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:DmpG/LeuA communication domain-like
63c3k1lA_



not modelled 6.2 18
PDB header:ligase
Chain: A: PDB Molecule:fancl;
PDBTitle: crystal structure of fancl
64c3zqsB_



not modelled 6.1 18
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase fancl;
PDBTitle: human fancl central domain
65c2gx8B_



not modelled 6.0 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:nif3-related protein;
PDBTitle: the crystal structure of bacillus cereus protein related to nif3
66c5vglA_



not modelled 6.0 16
PDB header:isomerase
Chain: A: PDB Molecule:lachrymatory-factor synthase;
PDBTitle: crystal structure of lachrymatory factor synthase from allium cepa
67d1sr9a1



not modelled 6.0 29
Fold:RuvA C-terminal domain-like
Superfamily:post-HMGL domain-like
Family:DmpG/LeuA communication domain-like
68d3proc1



not modelled 5.9 19
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
69c2ix4B_



not modelled 5.9 24
PDB header:transferase
Chain: B: PDB Molecule:3-oxoacyl-[acyl-carrier-protein] synthase;
PDBTitle: arabidopsis thaliana mitochondrial beta-ketoacyl acp synthase hexanoic2 acid complex
70c6d0hB_



not modelled 5.8 18
PDB header:toxin
Chain: B: PDB Molecule:pars: cog5642 (duf2384) antitoxin;
PDBTitle: part: prs adp-ribosylating toxin bound to cognate antitoxin pars
71c3c0vC_



not modelled 5.8 37
PDB header:plant protein
Chain: C: PDB Molecule:cytokinin-specific binding protein;
PDBTitle: crystal structure of cytokinin-specific binding protein in complex2 with cytokinin and ta6br12
72c4kegA_



not modelled 5.7 21
PDB header:lipid binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic/palate lung and nasal
PDBTitle: crystal structure of mbp fused human splunc1
73c1dvaX_



not modelled 5.5 90
PDB header:hydrolase/hydrolase inhibitor
Chain: X: PDB Molecule:peptide e-76;
PDBTitle: crystal structure of the complex between the peptide exosite inhibitor2 e-76 and coagulation factor viia
74c1dvaY_



not modelled 5.5 90
PDB header:hydrolase/hydrolase inhibitor
Chain: Y: PDB Molecule:peptide e-76;
PDBTitle: crystal structure of the complex between the peptide exosite inhibitor2 e-76 and coagulation factor viia
75c3j61G_



not modelled 5.2 43
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8e;
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
76c5elpA_



not modelled 5.1 6
PDB header:hydrolase
Chain: A: PDB Molecule:nrps/pks protein;
PDBTitle: ketosynthase from module 1 of the bacillaene synthase from bacillus2 amyloliquefaciens fzb42
77c1r7gA_



not modelled 5.0 44
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: nmr structure of the membrane anchor domain (1-31) of the2 nonstructural protein 5a (ns5a) of hepatitis c virus3 (minimized average structure, sample in 100mm dpc)

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