Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2742c_(-)_3055525_3056358
DateWed Aug 7 12:50:40 BST 2019
Unique Job IDd6aa93c5123cdad0
SequenceVLVDELGVKI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.292 Y:22.493 Z:17.755
Model (left) based on template c6dmaD_
Top template information
PDB header:de novo protein
Chain: D: PDB Molecule:dhd15_closed_b;
PDBTitle: dhd15_closed
Confidence and coverage
Confidence: 27.0% Coverage: 5%
14 residues ( 5% of your sequence) have been modelled with 27.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dmaD_



27.0 57
PDB header:de novo protein
Chain: D: PDB Molecule:dhd15_closed_b;
PDBTitle: dhd15_closed
2c2elpA_



19.1 46
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 13th c2h2 zinc finger of human2 zinc finger protein 406
3c2becB_



14.2 55
PDB header:metal binding protein/transport protein
Chain: B: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: crystal structure of chp2 in complex with its binding2 region in nhe1 and insights into the mechanism of ph3 regulation
4d1b8xa1



13.9 33
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
5c6hlwB_



12.7 54
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
6d1a6ca3



11.4 13
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
7c6hltD_



11.4 43
PDB header:viral protein
Chain: D: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)
8c1uusA_



11.1 33
PDB header:signal transduction
Chain: A: PDB Molecule:stat protein;
PDBTitle: structure of an activated dictyostelium stat in its2 dna-unbound form
9c2x3mA_



10.1 32
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein orf239;
PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus
10c6hmvB_



10.0 46
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-d68 (fusion protein, lvvy mutant)
11c5o9zN_



9.3 78
PDB header:splicing
Chain: N: PDB Molecule:zinc finger matrin-type protein 2;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
12c6hs6E_



9.2 28
PDB header:transport protein
Chain: E: PDB Molecule:type vi secretion protein impa;
PDBTitle: c-terminal domain of the tssa component of the type vi secretion2 system from burkholderia cenocepacia
13c1ng7A_



8.8 46
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein [core protein p3a];
PDBTitle: the solution structure of the soluble domain of poliovirus2 3a protein
14d1ng7a_



8.8 46
Fold:Soluble domain of poliovirus core protein 3a
Superfamily:Soluble domain of poliovirus core protein 3a
Family:Soluble domain of poliovirus core protein 3a
15c1ljzB_



8.7 57
PDB header:receptor, toxin
Chain: B: PDB Molecule:acetylcholine receptor protein;
PDBTitle: nmr structure of an achr-peptide (torpedo californica, alpha-subunit2 residues 182-202) in complex with alpha-bungarotoxin
16c3q66A_



8.3 30
PDB header:chaperone/transferase
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 75;
PDBTitle: structure of the vps75-rtt109 histone chaperone-lysine2 acetyltransferase complex (full-length proteins in space group p6122)
17d2e50a1



7.9 27
Fold:NAP-like
Superfamily:NAP-like
Family:NAP-like
18d1bg1a2



7.9 56
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:STAT DNA-binding domain
19c3dm7B_



7.7 27
PDB header:chaperone
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 75;
PDBTitle: crystal structure of the vps75 histone chaperone
20c5dayA_



7.6 40
PDB header:chaperone
Chain: A: PDB Molecule:nap1-related protein 1;
PDBTitle: the structure of nap1-related protein(nrp1) in arabidopsis
21c1yvlB_



not modelled 7.4 44
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
22d1bf5a2



not modelled 7.2 44
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:STAT DNA-binding domain
23c3gyvA_



not modelled 7.2 43
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein 1, putative;
PDBTitle: crystal structure of nucleosome assembly protein from plasmodium2 falciparum
24c5gplA_



not modelled 7.1 27
PDB header:chaperone
Chain: A: PDB Molecule:putative nucleosome assembly protein c36b7.08c;
PDBTitle: crystal structure of ccp1
25c2m1jA_



not modelled 6.5 57
PDB header:unknown function
Chain: A: PDB Molecule:prion-like protein doppel;
PDBTitle: ovine doppel signal peptide (1-30)
26c5wcvA_



not modelled 6.4 58
PDB header:toxin
Chain: A: PDB Molecule:shk homolog ask132958;
PDBTitle: ask132958: a minimal homologue of shk identified in the transcriptome2 of anemonia sulcata
27c2kuyA_



not modelled 6.2 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:prebacteriocin glycocin f;
PDBTitle: structure of glycocin f
28c3c9dB_



not modelled 6.1 27
PDB header:chaperone
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 75;
PDBTitle: crystal structure of vps75
29d1khxa_



not modelled 6.1 44
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:SMAD domain
30c1khxA_



not modelled 6.1 44
PDB header:transcription
Chain: A: PDB Molecule:smad2;
PDBTitle: crystal structure of a phosphorylated smad2
31c5ypsA_



not modelled 6.0 36
PDB header:chaperone
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 75;
PDBTitle: the structural basis of histone chaperonevps75
32c3l32B_



not modelled 5.5 56
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
33c3bvsA_



not modelled 5.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:alkylpurine dna glycosylase alkd;
PDBTitle: crystal structure of bacillus cereus alkylpurine dna glycosylase alkd
34c3kypA_



not modelled 5.3 45
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein;
PDBTitle: crystal structure of nucleosome assembly protein s (pfnaps) from2 plasmodium falciparum

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite