Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2754c_(thyX)_3067203_3067955
DateWed Aug 7 12:50:41 BST 2019
Unique Job ID8040a5899badc9bf
SequenceVAETAPLRVQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.842 Y:60.097 Z:51.179
Model (left) based on template c2af6G_
Top template information
PDB header:transferase
Chain: G: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of mycobacterium tuberculosis flavin dependent2 thymidylate synthase (mtb thyx) in the presence of co-factor fad and3 substrate analog 5-bromo-2'-deoxyuridine-5'-monophosphate (brdump)
Confidence and coverage
Confidence:100.0% Coverage: 98%
246 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2af6G_



100.0 98
PDB header:transferase
Chain: G: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of mycobacterium tuberculosis flavin dependent2 thymidylate synthase (mtb thyx) in the presence of co-factor fad and3 substrate analog 5-bromo-2'-deoxyuridine-5'-monophosphate (brdump)
2c3fnnA_



100.0 64
PDB header:transferase
Chain: A: PDB Molecule:thymidylate synthase thyx;
PDBTitle: biochemical and structural analysis of an atypical thyx:2 corynebacterium glutamicum nchu 87078 depends on thya for3 thymidine biosynthesis
3c6j61B_



100.0 24
PDB header:transferase
Chain: B: PDB Molecule:flavin-dependent thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase, thy1, from thermus2 thermophilus having an extra c terminal domain
4d1o26a_



100.0 21
Fold:Thymidylate synthase-complementing protein Thy1
Superfamily:Thymidylate synthase-complementing protein Thy1
Family:Thymidylate synthase-complementing protein Thy1
5c3ah5E_



100.0 25
PDB header:transferase
Chain: E: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of flavin dependent thymidylate synthase thyx from2 helicobacter pylori complexed with fad and dump
6c4p5aB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of a ump/dump methylase polb from streptomyces2 cacaoi bound with 5-br ump
7c2cfaB_



100.0 31
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase;
PDBTitle: structure of viral flavin-dependant thymidylate synthase thyx
8c3cuxA_



25.2 35
PDB header:transferase
Chain: A: PDB Molecule:malate synthase;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
9c5ydfA_



19.1 25
PDB header:transcription
Chain: A: PDB Molecule:parafibromin;
PDBTitle: crystal structure of a disease-related gene, hcdc73(1-100)
10c3cuzA_



14.9 38
PDB header:transferase
Chain: A: PDB Molecule:malate synthase a;
PDBTitle: atomic resolution structures of escherichia coli and2 bacillis anthracis malate synthase a: comparison with3 isoform g and implications for structure based drug design
11d2v7fa1



14.0 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rps19E-like
12c3mmiB_



12.8 11
PDB header:motor protein
Chain: B: PDB Molecule:myosin-4;
PDBTitle: crystal structure of the globular tail of myo4p
13c5vfbB_



12.0 31
PDB header:transferase
Chain: B: PDB Molecule:malate synthase g;
PDBTitle: 1.36 angstrom resolution crystal structure of malate synthase g from2 pseudomonas aeruginosa in complex with glycolic acid.
14d1nb5i_



11.2 21
Fold:Cystatin-like
Superfamily:Cystatin/monellin
Family:Cystatins
15c4i1oD_



10.5 16
PDB header:protein transport/hydrolase
Chain: D: PDB Molecule:lepb;
PDBTitle: crystal structure of the legionella pneumophila gap domain of lepb in2 complex with rab1b bound to gdp and bef3
16c3j21a_



10.5 9
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l1p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
17c3mlqD_



9.8 35
PDB header:transferase/transcription
Chain: D: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the thermus thermophilus transcription-repair2 coupling factor rna polymerase interacting domain with the thermus3 aquaticus rna polymerase beta1 domain
18c5tpjA_



9.5 32
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
19c5gyqA_



9.2 17
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein;
PDBTitle: putative receptor-binding domain of bat-derived coronavirus hku9 spike2 protein
20d2np3a1



8.8 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
21d1vqox1



not modelled 8.8 25
Fold:Ribosomal protein L31e
Superfamily:Ribosomal protein L31e
Family:Ribosomal protein L31e
22d1d1da1



not modelled 7.5 19
Fold:Acyl carrier protein-like
Superfamily:Retrovirus capsid dimerization domain-like
Family:Retrovirus capsid protein C-terminal domain
23c5lphA_



not modelled 7.4 19
PDB header:cell cycle
Chain: A: PDB Molecule:centrosomal protein of 104 kda;
PDBTitle: structure of the tog domain of human cep104
24c2xalA_



not modelled 7.4 30
PDB header:transferase
Chain: A: PDB Molecule:inositol-pentakisphosphate 2-kinase;
PDBTitle: lead derivative of inositol 1,3,4,5,6-pentakisphosphate 2-kinase from2 a. thaliana in complex with adp and ip6.
25c5vbnE_



not modelled 7.4 21
PDB header:transferase
Chain: E: PDB Molecule:dna polymerase epsilon subunit 2;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
26c2n28A_



not modelled 7.3 11
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
27c3pp5A_



not modelled 7.0 11
PDB header:structural protein
Chain: A: PDB Molecule:brk1;
PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
28c1yylS_



not modelled 7.0 30
PDB header:viral protein/immune system
Chain: S: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
29c1yylM_



not modelled 7.0 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
30c4r4ns_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: S: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
31c4r4ni_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: I: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
32c5w4lM_



not modelled 6.9 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:cd4 mimetic peptide m48u1;
PDBTitle: crystal structure of the non-neutralizing and adcc-potent c11-like2 antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd43 mimetic m48u1, and the antibody n5-i5.
33c4ka2R_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: R: PDB Molecule:m48u12;
PDBTitle: crystal structure of cd4-mimetic miniprotein m48u12 in complex with2 hiv-1 yu2 gp120
34c4r4na_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: A: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
35c4r4nb_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: B: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
36c5kjrN_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: N: PDB Molecule:m48u1 cd4 mimetic peptide;
PDBTitle: crystal structure of the adcc-potent antibody n60-i3 fab in complex2 with hiv-1 clade a/e gp120 w69a/s115w mutant and m48u1.
37c4k0aR_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: R: PDB Molecule:cd4-mimetic miniprotein m48u7;
PDBTitle: crystal structure of cd4-mimetic miniprotein m48u7 in complex with2 hiv-1 yu2 gp120
38c4r4nm_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: M: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
39c4jzzR_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: R: PDB Molecule:cd4-mimetic miniprotein m48u1;
PDBTitle: crystal structure of cd4-mimetic miniprotein m48u1 in complex with2 hiv-1 yu2 gp120 in c2221 space group
40c4r4nv_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: V: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
41c4rfoN_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: N: PDB Molecule:m48u1 cd4 mimetic peptide;
PDBTitle: crystal structure of the adcc-potent antibody n60-i3 fab in complex2 with hiv-1 clade a/e gp120 and m48u1
42c4jzwR_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: R: PDB Molecule:cd4-mimetic miniprotein m48u1;
PDBTitle: crystal structure of cd4-mimetic miniprotein m48u1 in complex with2 hiv-1 yu2 gp120 in p212121 space group
43c4lajK_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: K: PDB Molecule:cd4-mimetic miniprotein m48u1;
PDBTitle: crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
44c5uweN_



not modelled 6.9 30
PDB header:viral protein/immune system
Chain: N: PDB Molecule:m48u1 cd4 mimetic peptide;
PDBTitle: crystal structure of the adcc-potent, weakly neutralizing hiv env co-2 receptor binding site antibody n12-i2 fab in complex with hiv-1 clade3 a/e gp120 and m48u1
45c4r4np_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: P: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
46c4r4ne_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: E: PDB Molecule:hiv-1 gp120;
PDBTitle: crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-2 1 93ug037 gp120
47c4r4fR_



not modelled 6.9 30
PDB header:viral protein/immune system/inhibitor
Chain: R: PDB Molecule:m48u1 peptide;
PDBTitle: crystal structure of non-neutralizing, a32-like antibody 2.2c in2 complex with hiv-1 yu2 gp120
48c4lajC_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: C: PDB Molecule:cd4-mimetic miniprotein m48u1;
PDBTitle: crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
49c5w4lN_



not modelled 6.9 30
PDB header:viral protein/immune system
Chain: N: PDB Molecule:cd4 mimetic peptide m48u1;
PDBTitle: crystal structure of the non-neutralizing and adcc-potent c11-like2 antibody n12-i3 in complex with hiv-1 clade a/e gp120, the cd43 mimetic m48u1, and the antibody n5-i5.
50c4lajG_



not modelled 6.9 30
PDB header:viral protein/inhibitor
Chain: G: PDB Molecule:cd4-mimetic miniprotein m48u1;
PDBTitle: crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex2 with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly3 neutralizing, co-receptor binding site antibody, jm4
51c2i5yM_



not modelled 6.8 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:cd4m47, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of cd4m47, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
52c2p9lD_



not modelled 6.8 19
PDB header:structural protein
Chain: D: PDB Molecule:actin-related protein 2/3 complex subunit 2;
PDBTitle: crystal structure of bovine arp2/3 complex
53c3bbnD_



not modelled 6.7 21
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s4;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
54c1yymS_



not modelled 6.7 30
PDB header:viral protein/immune system
Chain: S: PDB Molecule:f23, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
55c1yymM_



not modelled 6.7 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:f23, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of f23, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
56c4rfnD_



not modelled 6.7 30
PDB header:viral protein/immune system
Chain: D: PDB Molecule:t-cell surface glycoprotein cd4 mimetic m48;
PDBTitle: crystal structure of adcc-potent rhesus macaque antibody jr4 in2 complex with hiv-1 clade a/e gp120 and m48
57c4rfnM_



not modelled 6.7 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:t-cell surface glycoprotein cd4 mimetic m48;
PDBTitle: crystal structure of adcc-potent rhesus macaque antibody jr4 in2 complex with hiv-1 clade a/e gp120 and m48
58c2i60M_



not modelled 6.6 30
PDB header:viral protein/immune system
Chain: M: PDB Molecule:[phe23]m47, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of [phe23]m47, a scorpion-toxin mimic of cd4, in2 complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-13 antibody 17b
59c2i60S_



not modelled 6.6 30
PDB header:viral protein/immune system
Chain: S: PDB Molecule:[phe23]m47, scorpion-toxin mimic of cd4;
PDBTitle: crystal structure of [phe23]m47, a scorpion-toxin mimic of cd4, in2 complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-13 antibody 17b
60d1n8ia_



not modelled 6.4 33
Fold:TIM beta/alpha-barrel
Superfamily:Malate synthase G
Family:Malate synthase G
61c3udsA_



not modelled 6.1 30
PDB header:transferase
Chain: A: PDB Molecule:inositol-pentakisphosphate 2-kinase;
PDBTitle: inositol 1,3,4,5,6-pentakisphosphate 2-kinase from a. thaliana in2 complex with adp.
62c3pf6C_



not modelled 5.6 38
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033;
PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7.
63d1k8kd2



not modelled 5.2 19
Fold:Secretion chaperone-like
Superfamily:Arp2/3 complex subunits
Family:Arp2/3 complex subunits
64c3izrg_



not modelled 5.2 20
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

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