Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2757c_(-)_3070180_3070596
DateWed Aug 7 12:50:41 BST 2019
Unique Job ID0045a7e72bf31606
SequenceMTTRYLLDKS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.898 Y:31.862 Z:36.460
Model (left) based on template c5sv2A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 98%
135 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5sv2A_



100.0 99
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
2c3h87B_



100.0 39
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
3d1v96a1



100.0 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c4chgC_



99.9 17
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
5c3dboB_



99.9 25
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
6d1y82a1



99.9 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
7c6a7vG_



99.9 26
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
8c3tndC_



99.9 18
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
9c3zvkC_



99.9 19
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
10d2h1ca1



99.9 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11c6nklA_



99.9 19
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
12c5l6mC_



99.9 19
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
13c4xgrG_



99.8 16
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
14c5x3tD_



99.6 17
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
15c5wzfB_



99.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
16c2fe1A_



99.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17d2fe1a1



99.4 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18c5ywwA_



99.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
19c3ix7A_



99.0 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
20c5f4hF_



99.0 13
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
21c3i8oA_



not modelled 98.8 9
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c2lcqA_



not modelled 98.5 13
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
23d1w8ia_



not modelled 98.4 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24d1v8pa_



not modelled 98.3 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25d1o4wa_



not modelled 98.3 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26c1v8pK_



not modelled 98.3 22
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
27c2hwwC_



not modelled 97.5 17
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 96.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 96.2 18
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c6g5iy_



not modelled 93.6 18
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2hwyB_



not modelled 89.6 13
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c4mj7B_



not modelled 84.9 13
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v32B_



not modelled 71.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
34c3v33A_



not modelled 66.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35d1cmwa2



not modelled 56.2 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36c3zddA_



not modelled 38.9 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
37d1tfra2



not modelled 38.8 35
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38d1xo1a2



not modelled 26.1 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c4mitG_



not modelled 18.8 38
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
40c2qipA_



not modelled 17.0 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
41c2cxaA_



not modelled 12.5 6
PDB header:transferase
Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase;
PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli
42d2cxaa1



not modelled 12.5 6
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:LFTR-like
43c5gkeB_



not modelled 12.1 32
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
44c1ut8B_



not modelled 11.2 19
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
45c1cmwA_



not modelled 10.9 20
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
46c4mitE_



not modelled 10.2 43
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
47c2n22B_



not modelled 9.8 36
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain of p65
48c1sy9B_



not modelled 7.3 43
PDB header:calcium-binding protein
Chain: B: PDB Molecule:cyclic-nucleotide-gated olfactory channel;
PDBTitle: structure of calmodulin complexed with a fragment of the2 olfactory cng channel
49c2ihnA_



not modelled 6.9 21
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
50c5urnB_



not modelled 6.7 36
PDB header:transcription
Chain: B: PDB Molecule:transcription factor p65;
PDBTitle: nmr structure of the complex between the ph domain of the tfb1 subunit2 from tfiih and the transactivation domain 1 of p65
51c6f8lJ_



not modelled 6.4 21
PDB header:motor protein
Chain: J: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (amppnp-bound form)
52d1a77a2



not modelled 6.2 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
53d1vola2



not modelled 6.0 12
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Transcription factor IIB (TFIIB), core domain
54c5yaaD_



not modelled 5.9 14
PDB header:hydrolase
Chain: D: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 nyn domain from mus musculus
55c2vldA_



not modelled 5.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease nucs;
PDBTitle: crystal structure of a repair endonuclease from pyrococcus abyssi

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