Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2759c_(-)_3070885_3071280
DateWed Aug 7 12:50:41 BST 2019
Unique Job IDcb583297ed071ec3
SequenceVIVDTSAIVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.861 Y:40.298 Z:42.874
Model (left) based on template c4xgrG_
Top template information
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence:100.0% Coverage: 95%
125 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgrG_



100.0 40
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2d2h1ca1



99.9 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
3c5wzfB_



99.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
4c3dboB_



99.8 21
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
5c3zvkC_



99.8 10
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
6c3h87B_



99.8 20
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
7c5l6mC_



99.8 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
8c6nklA_



99.8 16
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
9c5sv2A_



99.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
10c3tndC_



99.8 16
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
11c6a7vG_



99.8 22
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
12c5x3tD_



99.8 19
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
13d1v96a1



99.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
14c4chgC_



99.7 21
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
15d1y82a1



99.7 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c2fe1A_



99.7 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
17d2fe1a1



99.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
18d1w8ia_



99.5 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v8pa_



99.3 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c1v8pK_



99.3 16
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
21c3ix7A_



not modelled 98.3 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c3i8oA_



not modelled 97.9 17
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23c2lcqA_



not modelled 97.8 18
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
24d1o4wa_



not modelled 97.3 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c5ywwA_



not modelled 97.2 12
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c5f4hF_



not modelled 97.0 12
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
27c2hwwC_



not modelled 95.9 14
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5jpqd_



not modelled 93.8 23
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c5yz4A_



not modelled 92.2 16
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
30c6g5iy_



not modelled 89.8 16
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2hwyB_



not modelled 81.2 11
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c4mj7B_



not modelled 79.4 17
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c3v33A_



not modelled 70.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3v32B_



not modelled 69.8 13
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
35d1cmwa2



not modelled 48.5 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
36d1xo1a2



not modelled 31.8 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c3zddA_



not modelled 23.4 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
38d1tfra2



not modelled 12.8 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c4g94B_



not modelled 11.8 12
PDB header:dna binding protein
Chain: B: PDB Molecule:orf067;
PDBTitle: g1 orf67 / staphyloccus aureus sigmaa domain 4 complex
40c3rqcB_



not modelled 11.0 8
PDB header:transferase
Chain: B: PDB Molecule:probable lipoamide acyltransferase;
PDBTitle: crystal structure of the catalytic core of the 2-oxoacid dehydrogenase2 multienzyme complex from thermoplasma acidophilum
41c4mitG_



not modelled 10.5 21
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
42c4g25A_



not modelled 10.2 19
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
43c2ihnA_



not modelled 9.4 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
44c1ut8B_



not modelled 7.3 15
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
45c1cmwA_



not modelled 7.3 19
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
46d3eeqa1



not modelled 6.4 6
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
47c4pn7A_



not modelled 5.8 19
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of the tfiih p34 n-terminal domain
48c1jqsB_



not modelled 5.4 19
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog

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