Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2760c_(-)_3071277_3071546
DateWed Aug 7 12:50:42 BST 2019
Unique Job ID36c2c2df195073eb
SequenceMSLNIKSQRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.481 Y:38.379 Z:22.760
Model (left) based on template c4xgqD_
Top template information
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 91.0% Coverage: 31%
28 residues ( 31% of your sequence) have been modelled with 91.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgqD_
91.0 14
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2c4xgqB_
90.8 14
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
3c4xgrH_
74.8 19
PDB header:toxin/antitoxin
Chain: H: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
4c4xgrF_
74.7 19
PDB header:toxin/antitoxin
Chain: F: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
5c2k5jB_
65.3 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
6c6gtsC_
57.2 15
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
7c6ajnF_
54.3 15
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
8d1y9ba1
42.9 18
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
9c2kelB_
37.6 33
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
10c2q2kA_
24.0 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
11c2q2kB_
21.1 24
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of nucleic-acid binding protein
12c6a7vU_
17.3 34
PDB header:toxin/antitoxin
Chain: U: PDB Molecule:antitoxin vapb11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
13c3eabK_
16.2 35
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
14c3mx6A_
13.6 7
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of methionine aminopeptidase from rickettsia2 prowazekii bound to methionine
15d2gg2a1
12.7 12
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
16d1u9pa1
12.2 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
17c4fo7B_
12.0 11
PDB header:hydrolase
Chain: B: PDB Molecule:methionine aminopeptidase;
PDBTitle: pseudomonas aeruginosa metap, in mn form
18d1myka_
10.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
19d1bdta_
10.5 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
20c3tavA_
10.0 6
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase;
PDBTitle: crystal structure of a methionine aminopeptidase from mycobacterium2 abscessus
21d1baza_
not modelled 9.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
22c3f0nB_
not modelled 9.5 19
PDB header:lyase
Chain: B: PDB Molecule:mevalonate pyrophosphate decarboxylase;
PDBTitle: mus musculus mevalonate pyrophosphate decarboxylase
23c5ca8A_
not modelled 9.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:protein sey1;
PDBTitle: structures of the yeast dynamin-like gtpase sey1p in complex with gdp
24d1myla_
not modelled 9.3 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
25c2k9iB_
not modelled 9.3 14
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
26d1p94a_
not modelled 9.1 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
27c3um2E_
not modelled 9.0 56
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
28c3um1E_
not modelled 9.0 56
PDB header:membrane protein/transport protein
Chain: E: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
29c3um2B_
not modelled 9.0 56
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
30c3um0B_
not modelled 9.0 56
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:charged multivesicular body protein 5;
PDBTitle: crystal structure of the brox bro1 domain in complex with the c-2 terminal tail of chmp5
31d1o0xa_
not modelled 8.9 8
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
32d1q9ja2
not modelled 8.2 20
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
33d2hzaa1
not modelled 8.1 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
34d2a4da1
not modelled 7.9 28
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
35c3hxxA_
not modelled 7.8 18
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp
36d1cuka1
not modelled 7.7 21
Fold:RuvA C-terminal domain-like
Superfamily:DNA helicase RuvA subunit, C-terminal domain
Family:DNA helicase RuvA subunit, C-terminal domain
37c4egcA_
not modelled 7.6 50
PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
38c5h64b_
not modelled 7.3 16
PDB header:transferase
Chain: B: PDB Molecule:regulatory-associated protein of mtor;
PDBTitle: cryo-em structure of mtorc1
39c2g6pA_
not modelled 7.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase 1;
PDBTitle: crystal structure of truncated (delta 1-89) human methionine2 aminopeptidase type 1 in complex with pyridyl pyrimidine derivative
40c1wkbA_
not modelled 6.9 25
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
41d1efva2
not modelled 6.9 28
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
42c5vgtA_
not modelled 6.8 64
PDB header:viral protein
Chain: A: PDB Molecule:gene 7 protein;
PDBTitle: x-ray structure of bacteriophage sf6 tail adaptor protein gp7
43c1zvvA_
not modelled 6.5 16
PDB header:transcription/dna
Chain: A: PDB Molecule:glucose-resistance amylase regulator;
PDBTitle: crystal structure of a ccpa-crh-dna complex
44c3m92B_
not modelled 6.4 67
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycin;
PDBTitle: the structure of ycin, an unchracterized protein from shigella2 flexneri.
45d1mylb_
not modelled 6.1 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
46c2gz5A_
not modelled 5.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:methionine aminopeptidase 1;
PDBTitle: human type 1 methionine aminopeptidase in complex with ovalicin at 1.12 ang
47c6n10A_
not modelled 5.9 19
PDB header:lyase
Chain: A: PDB Molecule:diphosphomevalonate decarboxylase mvd1, peroxisomal;
PDBTitle: crystal structure of arabidopsis thaliana mevalonate 5-diphosphate2 decarboxylase 1 complexed with (r)-mvapp
48c4ifdK_
not modelled 5.7 37
PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
49c4ariA_
not modelled 5.7 50
PDB header:ligase/rna
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the2 benzoxaborole an2679 in the editing conformation
50d1bazb_
not modelled 5.7 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
51d1efpa2
not modelled 5.6 33
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:C-terminal domain of the electron transfer flavoprotein alpha subunit
52c3o0lB_
not modelled 5.3 43
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution

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