Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2761c_(hsdS)_3071556_3072650
DateWed Aug 7 12:50:42 BST 2019
Unique Job ID0de8c16813d1e0b2
SequenceMSRVEKVEKV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:76.697 Y:63.973 Z:78.097
Model (left) based on template c1yf2A_
Top template information
PDB header:hydrolase regulator
Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit;
PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications
Confidence and coverage
Confidence:100.0% Coverage: 96%
348 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1yf2A_



100.0 16
PDB header:hydrolase regulator
Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit;
PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications
2c1ydxA_



100.0 16
PDB header:dna binding protein
Chain: A: PDB Molecule:type i restriction enzyme specificity protein mg438;
PDBTitle: crystal structure of type-i restriction-modification system s subunit2 from m. genitalium
3c2y7cA_



100.0 10
PDB header:transferase
Chain: A: PDB Molecule:type-1 restriction enzyme ecoki specificity protein;
PDBTitle: atomic model of the ocr-bound methylase complex from the type i2 restriction-modification enzyme ecoki (m2s1). based on fitting into3 em map 1534.
4c3okgB_



100.0 12
PDB header:dna binding protein
Chain: B: PDB Molecule:restriction endonuclease s subunits;
PDBTitle: crystal structure of hsds subunit from thermoanaerobacter2 tengcongensis
5d1ydxa2



100.0 18
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
6d1yf2a2



99.9 16
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
7d1ydxa1



99.9 19
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
8d1yf2a1



99.9 17
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:Type I restriction modification DNA specificity domain
9c1aqjB_



97.1 13
PDB header:methyltransferase
Chain: B: PDB Molecule:adenine-n6-dna-methyltransferase taqi;
PDBTitle: structure of adenine-n6-dna-methyltransferase taqi
10c1g38A_



96.8 13
PDB header:transferase/dna
Chain: A: PDB Molecule:modification methylase taqi;
PDBTitle: adenine-specific methyltransferase m. taq i/dna complex
11c3s1sA_



93.3 13
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:restriction endonuclease bpusi;
PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi
12c5hr4J_



76.3 13
PDB header:hydrolase/dna
Chain: J: PDB Molecule:mmei;
PDBTitle: structure of type iil restriction-modification enzyme mmei in complex2 with dna has implications for engineering of new specificities
13c3bc1F_



49.9 12
PDB header:signaling protein/transport protein
Chain: F: PDB Molecule:synaptotagmin-like protein 2;
PDBTitle: crystal structure of the complex rab27a-slp2a
14d1zkea1



41.9 7
Fold:ROP-like
Superfamily:HP1531-like
Family:HP1531-like
15c5ihfA_



32.3 20
PDB header:unknown function
Chain: A: PDB Molecule:virg-like protein;
PDBTitle: salmonella typhimurium virg-like (stv) protein
16c4jkvA_



26.7 20
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562, smoothened homolog;
PDBTitle: structure of the human smoothened 7tm receptor in complex with an2 antitumor agent
17c4ug1A_



25.1 11
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
18c6d80A_



23.6 6
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter from n.2 fischeri bound to saposin
19c2lqtA_



22.5 22
PDB header:unknown function
Chain: A: PDB Molecule:coiled-coil-helix-coiled-coil-helix domain-containing
PDBTitle: solution structure of chchd7
20d2ih2a2



21.5 14
Fold:DNA methylase specificity domain
Superfamily:DNA methylase specificity domain
Family:TaqI C-terminal domain-like
21c6j5id_



not modelled 16.8 18
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
22c6roiA_



not modelled 16.4 18
PDB header:lipid transport
Chain: A: PDB Molecule:probable phospholipid-transporting atpase drs2;
PDBTitle: cryo-em structure of the partially activated drs2p-cdc50p
23c3vhlA_



not modelled 16.2 16
PDB header:signaling protein
Chain: A: PDB Molecule:dedicator of cytokinesis protein 8;
PDBTitle: crystal structure of the dhr-2 domain of dock8 in complex with cdc422 (t17n mutant)
24c4zrkH_



not modelled 16.1 42
PDB header:signaling protein/transferase
Chain: H: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
25c4zrkF_



not modelled 16.1 42
PDB header:signaling protein/transferase
Chain: F: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
26c4zrkE_



not modelled 16.1 42
PDB header:signaling protein/transferase
Chain: E: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
27c4zrkG_



not modelled 15.9 42
PDB header:signaling protein/transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
28c2ke4A_



not modelled 15.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
29c5frgA_



not modelled 15.2 7
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
30d1y71a1



not modelled 14.4 15
Fold:SH3-like barrel
Superfamily:Kinase-associated protein B-like
Family:Kinase-associated protein B-like
31c2jufA_



not modelled 14.4 16
PDB header:gene regulation
Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein;
PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto
32c4f8cC_



not modelled 14.4 9
PDB header:cell cycle/protein binding
Chain: C: PDB Molecule:cycle inhibiting factor;
PDBTitle: structure of the cif:nedd8 complex - yersinia pseudotuberculosis cycle2 inhibiting factor in complex with human nedd8
33c2gd3A_



not modelled 13.1 42
PDB header:unknown function
Chain: A: PDB Molecule:humanin;
PDBTitle: nmr structure of s14g-humanin in 30% tfe solution
34c2wukD_



not modelled 12.6 9
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
35c6cfzC_



not modelled 12.6 35
PDB header:nuclear protein
Chain: C: PDB Molecule:dad2;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
36c3mudA_



not modelled 12.3 14
PDB header:contractile protein
Chain: A: PDB Molecule:dna repair protein xrcc4,tropomyosin alpha-1 chain;
PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
37c5zx8A_



not modelled 12.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from thermus thermophilus
38c3ghgK_



not modelled 11.9 8
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
39d2jnga1



not modelled 11.9 16
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:CPH domain
40c5xauC_



not modelled 11.5 19
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
41c2xvsA_



not modelled 10.9 8
PDB header:antitumor protein
Chain: A: PDB Molecule:tetratricopeptide repeat protein 5;
PDBTitle: crystal structure of human ttc5 (strap) c-terminal ob2 domain
42c2wmoA_



not modelled 10.9 24
PDB header:cell cycle
Chain: A: PDB Molecule:dedicator of cytokinesis protein 9;
PDBTitle: structure of the complex between dock9 and cdc42.
43c2owyB_



not modelled 10.7 13
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination-associated protein rdgc;
PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding
44c2hjqA_



not modelled 10.6 10
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein yqbf;
PDBTitle: nmr structure of bacillus subtilis protein yqbf, northeast2 structural genomics target sr449
45d2nrka1



not modelled 10.4 8
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:GrpB-like
46c4ylyB_



not modelled 10.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, staphylococcus aureus at 2.25 angstrom resolution
47c6gqaD_



not modelled 10.0 6
PDB header:cell cycle
Chain: D: PDB Molecule:cell cycle protein gpsb;
PDBTitle: cell division regulator s. pneumoniae gpsb
48c3kxeD_



not modelled 9.2 21
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
49c2l5gB_



not modelled 8.7 10
PDB header:transcription regulator
Chain: B: PDB Molecule:putative uncharacterized protein ncor2;
PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207
50c3plwA_



not modelled 8.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
51c5td8B_



not modelled 8.3 12
PDB header:replication
Chain: B: PDB Molecule:kinetochore protein nuf2;
PDBTitle: crystal structure of an extended dwarf ndc80 complex
52c3zifP_



not modelled 7.5 10
PDB header:virus
Chain: P: PDB Molecule:pix;
PDBTitle: cryo-em structures of two intermediates provide insight into2 adenovirus assembly and disassembly
53c4ct4C_



not modelled 7.3 7
PDB header:rna binding protein
Chain: C: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: cnot1 mif4g domain - ddx6 complex
54c4q55B_



not modelled 7.3 21
PDB header:hydrolase
Chain: B: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of peptidyl-trna hydrolase from a gram-positive2 bacterium, streptococcus pyogenes at 2.19a resolution shows the3 closed structure of the substrate binding cleft
55c3q4fG_



not modelled 7.3 17
PDB header:dna binding protein/protein binding
Chain: G: PDB Molecule:dna repair protein xrcc4;
PDBTitle: crystal structure of xrcc4/xlf-cernunnos complex
56c4hpqE_



not modelled 7.3 22
PDB header:protein transport
Chain: E: PDB Molecule:atg31;
PDBTitle: crystal structure of the atg17-atg31-atg29 complex
57c2lvgA_



not modelled 7.2 12
PDB header:membrane protein
Chain: A: PDB Molecule:non-structural protein 4b;
PDBTitle: nmr structure of hcv non-structural protein ab, ns4b(1-40)
58c3cqxD_



not modelled 6.8 24
PDB header:chaperone
Chain: D: PDB Molecule:bag family molecular chaperone regulator 2;
PDBTitle: chaperone complex
59c5kb0A_



not modelled 6.8 19
PDB header:de novo protein
Chain: A: PDB Molecule:pb(ii)zn(ii)(grand coil ser-l16cl30h)3+;
PDBTitle: crystal structure of a tris-thiolate pb(ii) complex in a de novo2 three-stranded coiled coil peptide
60d1q08a_



not modelled 6.8 14
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
61d1vf6a_



not modelled 6.7 10
Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
62c4pn8A_



not modelled 6.7 14
PDB header:de novo protein
Chain: A: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
63c4pn8H_



not modelled 6.7 14
PDB header:de novo protein
Chain: H: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
64c4pn8D_



not modelled 6.7 14
PDB header:de novo protein
Chain: D: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
65c4pn8C_



not modelled 6.7 14
PDB header:de novo protein
Chain: C: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
66c4pn8B_



not modelled 6.7 14
PDB header:de novo protein
Chain: B: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
67c4pn8J_



not modelled 6.7 14
PDB header:de novo protein
Chain: J: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
68c4pn8E_



not modelled 6.7 14
PDB header:de novo protein
Chain: E: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
69c4pn8G_



not modelled 6.7 14
PDB header:de novo protein
Chain: G: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
70c4pn8F_



not modelled 6.7 14
PDB header:de novo protein
Chain: F: PDB Molecule:cc-pent;
PDBTitle: a de novo designed pentameric coiled coil cc-pent.
71d2clyb1



not modelled 6.6 6
Fold:ATP synthase D chain-like
Superfamily:ATP synthase D chain-like
Family:ATP synthase D chain-like
72c1vf6B_



not modelled 6.4 10
PDB header:protein binding/protein transport
Chain: B: PDB Molecule:pals1-associated tight junction protein;
PDBTitle: 2.1 angstrom crystal structure of the pals-1-l27n and patj l272 heterodimer complex
73c4melB_



not modelled 6.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 11;
PDBTitle: crystal structure of the human usp11 dusp-ubl domains
74d1o5ha_



not modelled 6.3 15
Fold:Methenyltetrahydrofolate cyclohydrolase-like
Superfamily:Methenyltetrahydrofolate cyclohydrolase-like
Family:Methenyltetrahydrofolate cyclohydrolase-like
75c3v2iA_



not modelled 5.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structure of a peptidyl-trna hydrolase (pth) from burkholderia2 thailandensis
76c1ei3E_



not modelled 5.8 9
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
77c5gmkt_



not modelled 5.6 13
PDB header:rna binding protein/rna
Chain: T: PDB Molecule:pre-mrna-splicing factor bud31;
PDBTitle: cryo-em structure of the catalytic step i spliceosome (c complex) at2 3.4 angstrom resolution
78c5gnaB_



not modelled 5.6 17
PDB header:gene regulation
Chain: B: PDB Molecule:flagellar hook-associated protein 2;
PDBTitle: crystal structure of flagellin assembly related protein
79c2e6iA_



not modelled 5.5 20
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase itk/tsk;
PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human
80c3pp5A_



not modelled 5.5 16
PDB header:structural protein
Chain: A: PDB Molecule:brk1;
PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
81c2l2lA_



not modelled 5.5 12
PDB header:transferase
Chain: A: PDB Molecule:transcriptional repressor p66-alpha;
PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha
82c3njcA_



not modelled 5.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yslb protein;
PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460.
83c2yinB_



not modelled 5.3 19
PDB header:apoptosis
Chain: B: PDB Molecule:dedicator of cytokinesis protein 2;
PDBTitle: structure of the complex between dock2 and rac1.
84c2clyE_



not modelled 5.3 6
PDB header:hydrolase
Chain: E: PDB Molecule:atp synthase d chain, mitochondrial;
PDBTitle: subcomplex of the stator of bovine mitochondrial atp synthase
85c6dnfA_



not modelled 5.3 6
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter mcu;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter mcu from the2 fungus cyphellophora europaea
86c3p8cE_



not modelled 5.3 26
PDB header:protein binding
Chain: E: PDB Molecule:probable protein brick1;
PDBTitle: structure and control of the actin regulatory wave complex
87d1t3ua_



not modelled 5.2 19
Fold:Cell division protein ZapA-like
Superfamily:Cell division protein ZapA-like
Family:Cell division protein ZapA-like
88c3zeyZ_



not modelled 5.1 33
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s33, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
89c1t6fA_



not modelled 5.1 9
PDB header:cell cycle
Chain: A: PDB Molecule:geminin;
PDBTitle: crystal structure of the coiled-coil dimerization motif of2 geminin
90c4ypiG_



not modelled 5.1 23
PDB header:rna binding protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35
91c4ypiF_



not modelled 5.1 23
PDB header:rna binding protein
Chain: F: PDB Molecule:polymerase cofactor vp35;
PDBTitle: structure of ebola virus nucleoprotein n-terminal fragment bound to a2 peptide derived from ebola vp35

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