Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2777c_(-)_3084495_3085565
DateWed Aug 7 12:50:43 BST 2019
Unique Job IDc8ea8674841af553
SequenceVNVEVHSAPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.659 Y:50.654 Z:40.567
Model (left) based on template d1rcwa_
Top template information
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
Confidence and coverage
Confidence: 95.8% Coverage: 45%
161 residues ( 45% of your sequence) have been modelled with 95.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1rcwa_



95.8 11
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
2c3chtA_



95.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase;
PDBTitle: crystal structure of di-iron aurf with partially bound ligand
3c5hyhA_



93.4 16
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: cmli (chemically reduced state), arylamine oxygenase of2 chloramphenicol biosynthetic pathway
4d2fzfa1



90.6 12
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
5c5olkD_



79.0 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase, beta subunit 1;
PDBTitle: crystal structure of the atp-cone-containing nrdb from2 leeuwenhoekiella blandensis
6c2o1zA_



78.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase subunit r2;
PDBTitle: plasmodium vivax ribonucleotide reductase subunit r2 (pv086155)
7c3oghB_



72.5 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycie;
PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins
8c4a58B_



61.6 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase small chain;
PDBTitle: crystal structure of a monometal state of the2 ribonucleotide-reductase small subunit from epstein-barr virus in3 orthorhombic space group
9c2rccC_



61.3 12
PDB header:oxidoreductase
Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution
10d2fkza1



61.1 8
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
11c2vuxB_



58.5 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b;
PDBTitle: human ribonucleotide reductase, subunit m2 b
12c2edfA_



46.9 31
PDB header:contractile protein
Chain: A: PDB Molecule:obscurin;
PDBTitle: solution structure of the second ig-like domain(2826-2915)2 from human obscurin
13d1nf4a_



44.6 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
14d2bmob1



42.5 30
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
15c3bknB_



41.0 20
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: the structure of mycobacterial bacterioferritin
16c6cwqA_



40.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase;
PDBTitle: x-ray crystal structure of flavobacterium johnsoniae dimanganese(ii)2 ribonucleotide reductase beta subunit (as-isolated)
17c5uxgB_



40.2 14
PDB header:lyase
Chain: B: PDB Molecule:aldehyde deformylating oxygenase;
PDBTitle: protein 84 with aldehyde deformylating oxygenase activity from2 sulfolobus tokodaii (monoclinic)
18c4am4B_



38.5 11
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: bacterioferritin from blastochloris viridis
19d2htna1



37.2 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
20c2vzbA_



35.6 16
PDB header:metal transport
Chain: A: PDB Molecule:putative bacterioferritin-related protein;
PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis
21d1jk0b_



not modelled 31.8 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
22c4bmtB_



not modelled 31.5 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: crystal structure of ribonucleotide reductase di-iron nrdf2 from bacillus cereus
23d2p62a1



not modelled 31.5 67
Fold:PH0156-like
Superfamily:PH0156-like
Family:PH0156-like
24c3fvbB_



not modelled 30.9 16
PDB header:metal binding protein
Chain: B: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of ferritin (bacterioferritin) from brucella2 melitensis
25d1jgca_



not modelled 30.5 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
26c5nv3P_



not modelled 29.6 30
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
27c4etrA_



not modelled 29.2 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: x-ray structure of pa2169 from pseudomonas aeruginosa
28d1uzhc1



not modelled 29.1 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
29d3buxb2



not modelled 28.9 31
Fold:N-cbl like
Superfamily:N-terminal domain of cbl (N-cbl)
Family:N-terminal domain of cbl (N-cbl)
30d2oh3a1



not modelled 28.4 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:AMB4284-like
31d1rbli_



not modelled 28.3 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
32c1avoA_



not modelled 27.6 11
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
33d2bo4a1



not modelled 27.4 38
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:MGS-like
34c1yfdA_



not modelled 27.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta chain;
PDBTitle: crystal structure of the y122h mutant of ribonucleotide reductase r22 protein from e. coli
35c2p1iA_



not modelled 27.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleotide reductase, small chain;
PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671)
36d1bwvs_



not modelled 26.7 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
37c1smqD_



not modelled 26.1 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain
PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae
38c1r2fB_



not modelled 26.0 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:protein (ribonucleotide reductase r2);
PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium
39d1svdm1



not modelled 25.7 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
40d1bxni_



not modelled 25.6 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
41d1za0a1



not modelled 25.6 16
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
42c5mz2I_



not modelled 25.4 25
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
43d5easa1



not modelled 25.4 10
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
44c5xx9A_



not modelled 24.3 16
PDB header:metal transport
Chain: A: PDB Molecule:bacterioferritin;
PDBTitle: crystal structure of bacterioferritin
45c5c05A_



not modelled 23.8 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative gamma-terpinene synthase;
PDBTitle: crystal structure of gamma-terpinene synthase from thymus vulgaris
46c2ybvN_



not modelled 23.5 35
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
47c5w7dA_



not modelled 22.9 46
PDB header:hydrolase
Chain: A: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: murine acyloxyacyl hydrolase (aoah), s262a mutant
48d1w68a_



not modelled 22.7 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
49c2lnhA_



not modelled 22.7 33
PDB header:signaling protein/protein binding
Chain: A: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
50d1o7nb_



not modelled 22.6 24
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
51d1r2fa_



not modelled 22.4 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
52c2v43A_



not modelled 22.2 31
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
53c2kz9A_



not modelled 21.5 33
PDB header:proton transport
Chain: A: PDB Molecule:v-type proton atpase subunit e;
PDBTitle: structure of e1-69 of yeast v-atpase
54c4n83F_



not modelled 21.0 8
PDB header:oxidoreductase
Chain: F: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta;
PDBTitle: x-ray crystal structure of streptococcus sanguinis dimanganese(ii)-2 nrdf
55c5w78B_



not modelled 20.2 46
PDB header:hydrolase
Chain: B: PDB Molecule:acyloxyacyl hydrolase;
PDBTitle: human acyloxyacyl hydrolase (aoah), proteolytically processed
56d1vjxa_



not modelled 19.9 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
57d1y71a1



not modelled 19.9 21
Fold:SH3-like barrel
Superfamily:Kinase-associated protein B-like
Family:Kinase-associated protein B-like
58c2qizA_



not modelled 19.4 25
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin conjugation factor e4;
PDBTitle: structure of the yeast u-box-containing ubiquitin ligase2 ufd2p
59d1ir1s_



not modelled 19.3 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
60d1vs5o1



not modelled 18.7 20
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
61c5n5eM_



not modelled 18.6 11
PDB header:oxidoreductase
Chain: M: PDB Molecule:pfc_05175;
PDBTitle: crystal structure of encapsulated ferritin domain from pyrococcus2 furiosus pfc_05175
62d1a32a_



not modelled 18.4 18
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
63c5o5jO_



not modelled 18.4 33
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s15;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
64c3q4nA_



not modelled 18.1 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mj0754;
PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661
65c3ulwA_



not modelled 17.9 27
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s15;
PDBTitle: 30s ribosomal protein s15 from campylobacter jejuni
66d1kuqa_



not modelled 17.6 24
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
67c3aagA_



not modelled 17.4 47
PDB header:transferase
Chain: A: PDB Molecule:general glycosylation pathway protein;
PDBTitle: crystal structure of c. jejuni pglb c-terminal domain
68c1h0oA_



not modelled 17.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase;
PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state
69d1g1xb_



not modelled 16.6 27
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
70d1uzra_



not modelled 15.8 11
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
71d1gk8i_



not modelled 15.7 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
72c2p0vA_



not modelled 15.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides thetaiotaomicron,2 northeast structural genomics target btr58
73d2p0va1



not modelled 15.5 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
74d2v6ai1



not modelled 15.4 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
75c3bbnO_



not modelled 15.2 12
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein s15;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
76d1smsa_



not modelled 15.0 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
77c2n5lA_



not modelled 14.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 c-terminal domain
78c6d9fA_



not modelled 14.5 18
PDB header:lyase
Chain: A: PDB Molecule:putative vlmb homolog;
PDBTitle: protein 60 with aldehyde deformylating oxidase activity from2 kitasatospora setae
79d1jk0a_



not modelled 14.5 14
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
80d1wdds_



not modelled 14.3 15
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
81c1yuzB_



not modelled 14.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
82c3ddeB_



not modelled 14.2 10
PDB header:unknown function
Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme
PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution
83d1n1ba1



not modelled 14.1 12
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
84c4jkmB_



not modelled 13.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of clostridium perfringens beta-glucuronidase
85c3g4dB_



not modelled 13.8 25
PDB header:lyase
Chain: B: PDB Molecule:(+)-delta-cadinene synthase isozyme xc1;
PDBTitle: crystal structure of (+)-delta-cadinene synthase from gossypium2 arboreum and evolutionary divergence of metal binding motifs for3 catalysis
86c1q3jA_



not modelled 13.8 67
PDB header:antifungal protein
Chain: A: PDB Molecule:alo3;
PDBTitle: solution structure of alo3: a new knottin-type antifungal peptide from2 the insect acrocinus longimanus
87d1q3ja_



not modelled 13.8 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Gurmarin-like
Family:Antifungal peptide
88c3n0fA_



not modelled 13.7 19
PDB header:lyase
Chain: A: PDB Molecule:isoprene synthase;
PDBTitle: crystal structure of isoprene synthase from grey poplar leaves2 (populus x canescens)
89c1hx9A_



not modelled 13.4 13
PDB header:lyase
Chain: A: PDB Molecule:5-epi-aristolochene synthase;
PDBTitle: crystal structure of teas w273s form 1
90d8ruci_



not modelled 13.4 30
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
91d1uzdc1



not modelled 13.3 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
92c5sv6A_



not modelled 13.3 16
PDB header:unknown function
Chain: A: PDB Molecule:extracellular solute-binding protein, family 3;
PDBTitle: crystal structure of mxaj from methlophaga aminisulfidivorans mpt
93d2ib0a1



not modelled 13.2 9
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Rv2844-like
94c2ib0A_



not modelled 13.2 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical alanine rich protein;
PDBTitle: crystal structure of a conserved hypothetical protein, rv2844, from2 mycobacterium tuberculosis
95d1ej7s_



not modelled 13.1 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
96d1z72a1



not modelled 12.5 9
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:TENA/THI-4
97c1v5vA_



not modelled 12.4 33
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
98c2gu1A_



not modelled 12.4 27
PDB header:hydrolase
Chain: A: PDB Molecule:zinc peptidase;
PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
99d3dhza1



not modelled 12.2 13
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like

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Transmembrane helix prediction 

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