Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2783c_(gpsI)_3090349_3092607
DateWed Aug 7 12:50:44 BST 2019
Unique Job IDaaea1942a2711c78
SequenceMSAAEIDEGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.972 Y:64.518 Z:125.370
Model (left) based on template c4aimA_
Top template information
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
Confidence and coverage
Confidence:100.0% Coverage: 91%
682 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4aimA_
100.0 46
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
2c4nbqB_
100.0 45
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of the polynucleotide phosphorylase (cbu_0852) from coxiella2 burnetii
3c1e3pA_
100.0 73
PDB header:polyribonucleotide transferase
Chain: A: PDB Molecule:guanosine pentaphosphate synthetase;
PDBTitle: tungstate derivative of streptomyces antibioticus pnpase/2 gpsi enzyme
4c4am3A_
100.0 47
PDB header:transferase/rna
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rna
5c1e3hA_
100.0 71
PDB header:polyribonucleotide transferase
Chain: A: PDB Molecule:guanosine pentaphosphate synthetase;
PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi enzyme
6c3u1kB_
100.0 36
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of human pnpase
7c6d6kB_
100.0 45
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of polyribonucleotide nucleotidyltransferase from2 acinetobacter baumannii
8c4aidC_
100.0 47
PDB header:transferase/peptide
Chain: C: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
9c3cdiA_
100.0 47
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide phosphorylase;
PDBTitle: crystal structure of e. coli pnpase
10c5xexC_
100.0 47
PDB header:transferase
Chain: C: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of s.aureus pnpase catalytic domain
11c5yjjE_
100.0 52
PDB header:cytosolic protein
Chain: E: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of pnpase from staphylococcus epidermidis
12c3cdjA_
100.0 47
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide phosphorylase;
PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase
13d1e3ha2
100.0 80
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
14c2po2A_
100.0 31
PDB header:hydrolase/hydrolase
Chain: A: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with cdp
15c2wnrB_
100.0 32
PDB header:hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly
16c2ba1D_
100.0 30
PDB header:rna binding protein
Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41;
PDBTitle: archaeal exosome core
17c2nn6B_
100.0 24
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:exosome complex exonuclease rrp41;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
18c2c37L_
100.0 32
PDB header:hydrolase
Chain: L: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: rnase ph core of the archaeal exosome in complex with u82 rna
19c6d6rF_
100.0 21
PDB header:hydrolase
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
20c3dd6A_
100.0 23
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of rph, an exoribonuclease from bacillus anthracis2 at 1.7 a resolution
21c6qh2A_
not modelled 100.0 45
PDB header:signaling protein
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: solution nmr ensemble for a chimeric kh-s1 domain construct of2 exosomal polynucleotide phosphrylase at 298k compiled using the3 comand method
22c1udsA_
not modelled 100.0 21
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus
23c2wp8B_
not modelled 100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:exosome complex component ski6;
PDBTitle: yeast rrp44 nuclease
24c2pnzB_
not modelled 100.0 21
PDB header:hydrolase/hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 2;
PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp
25c4ifdF_
not modelled 100.0 16
PDB header:hydrolase/rna
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
26c1r6mA_
not modelled 100.0 26
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph from2 pseudomonas aeruginosa in complex with phosphate
27c3b4tC_
not modelled 100.0 24
PDB header:transferase
Chain: C: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340
28c2nn6C_
not modelled 100.0 17
PDB header:hydrolase/transferase
Chain: C: PDB Molecule:exosome complex exonuclease rrp43;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
29d1e3ha6
not modelled 100.0 75
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
30c3hkmB_
not modelled 100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:os03g0854200 protein;
PDBTitle: crystal structure of rice(oryza sativa) rrp46
31c2wnrC_
not modelled 100.0 16
PDB header:hydrolase
Chain: C: PDB Molecule:probable exosome complex exonuclease 2;
PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly
32c2nn6E_
not modelled 100.0 17
PDB header:hydrolase/transferase
Chain: E: PDB Molecule:exosome complex exonuclease rrp42;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
33c2ba0I_
not modelled 100.0 22
PDB header:rna binding protein
Chain: I: PDB Molecule:archaeal exosome rna binding protein rrp42;
PDBTitle: archaeal exosome core
34c2br2G_
not modelled 100.0 24
PDB header:hydrolase
Chain: G: PDB Molecule:exosome complex exonuclease 2;
PDBTitle: rnase ph core of the archaeal exosome
35d1e3ha3
not modelled 100.0 77
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
36c2nn6D_
not modelled 100.0 24
PDB header:hydrolase/transferase
Chain: D: PDB Molecule:exosome complex exonuclease rrp46;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
37c2nn6F_
not modelled 100.0 22
PDB header:hydrolase/transferase
Chain: F: PDB Molecule:exosome component 6;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
38c1oysA_
not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the phosphorolytic exoribonuclease2 rnase ph from bacillus subtilis
39c4ifdD_
not modelled 100.0 21
PDB header:hydrolase/rna
Chain: D: PDB Molecule:exosome complex component rrp46;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
40d1e3ha5
not modelled 100.0 64
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
41c4ifdE_
not modelled 100.0 12
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
42d2je6b1
not modelled 100.0 31
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
43c2nn6A_
not modelled 100.0 18
PDB header:hydrolase/transferase
Chain: A: PDB Molecule:polymyositis/scleroderma autoantigen 1;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
44d2ba0d1
not modelled 100.0 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
45c2wp8A_
not modelled 99.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:exosome complex component rrp45;
PDBTitle: yeast rrp44 nuclease
46d2nn6b1
not modelled 99.9 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
47d1r6la1
not modelled 99.9 23
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
48d1udsa1
not modelled 99.9 19
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
49d2ba0g1
not modelled 99.9 24
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
50d2je6a1
not modelled 99.9 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
51d2nn6e1
not modelled 99.9 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
52d2nn6a1
not modelled 99.9 19
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
53c3krnB_
not modelled 99.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:protein c14a4.5, confirmed by transcript evidence;
PDBTitle: crystal structure of c. elegans cell-death-related nuclease 5(crn-5)
54d2nn6c1
not modelled 99.9 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
55d1oysa1
not modelled 99.9 23
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
56d2nn6f1
not modelled 99.9 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
57d2nn6d1
not modelled 99.9 25
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
58d1udsa2
not modelled 99.7 21
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
59c4ifdC_
not modelled 99.7 19
PDB header:hydrolase/rna
Chain: C: PDB Molecule:exosome complex component rrp43;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
60d1r6la2
not modelled 99.7 19
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
61c2cqoA_
not modelled 99.6 32
PDB header:ribosome
Chain: A: PDB Molecule:nucleolar protein of 40 kda;
PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067
62c1q46A_
not modelled 99.6 23
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia
63c4nnkA_
not modelled 99.6 36
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: structural basis for targeting the ribosomal protein s1 of2 mycobacterium tuberculosis by pyrazinamide
64d1e3ha1
not modelled 99.6 48
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
65c2eqsA_
not modelled 99.6 34
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dhx8;
PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8
66c1q8kA_
not modelled 99.6 27
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2
PDBTitle: solution structure of alpha subunit of human eif2
67c1yz6A_
not modelled 99.5 28
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 alpha
PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi
68c5x8r8_
not modelled 99.5 30
PDB header:ribosome
Chain: 8: PDB Molecule:30s ribosomal protein s1, chloroplastic;
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
69d1whua_
not modelled 99.5 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
Family:Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
70d1q46a2
not modelled 99.5 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71c3j81j_
not modelled 99.5 24
PDB header:ribosome
Chain: J: PDB Molecule:us4;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
72d2ba0a1
not modelled 99.5 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
73d1kl9a2
not modelled 99.5 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
74d1oysa2
not modelled 99.4 23
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
75c2k4kA_
not modelled 99.4 31
PDB header:rna binding protein
Chain: A: PDB Molecule:general stress protein 13;
PDBTitle: solution structure of gsp13 from bacillus subtilis
76c2khiA_
not modelled 99.4 36
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1
77d1go3e1
not modelled 99.4 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
78c2ahoB_
not modelled 99.4 27
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: structure of the archaeal initiation factor eif2 alpha-gamma2 heterodimer from sulfolobus solfataricus complexed with gdpnp
79c5lm7A_
not modelled 99.4 13
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: crystal structure of the lambda n-nus factor complex
80c2oceA_
not modelled 99.4 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
81c2khjA_
not modelled 99.4 28
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1
82d2z0sa1
not modelled 99.4 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
83c1kl9A_
not modelled 99.4 27
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1;
PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha
84d2ba0d2
not modelled 99.4 27
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
85d1sroa_
not modelled 99.4 38
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
86d2nn6h1
not modelled 99.3 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
87c2k52A_
not modelled 99.3 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1198;
PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b
88c1hh2P_
not modelled 99.3 17
PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
89d3bzka4
not modelled 99.3 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
90d2je6i1
not modelled 99.3 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
91d2je6b2
not modelled 99.2 20
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
92d2ahob2
not modelled 99.2 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
93c3psiA_
not modelled 99.2 9
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451)
94d2z0sa2
not modelled 99.2 20
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
95c2mflA_
not modelled 99.2 21
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 2 of e. coli ribosomal protein s1
96c5xq5A_
not modelled 99.2 28
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 5 of the e. coli ribosomal protein s1
97d1wi5a_
not modelled 99.1 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
98c2mfiA_
not modelled 99.1 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 1 of e. coli ribosomal protein s1
99d2br2b2
not modelled 99.1 20
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
100d1smxa_
not modelled 99.1 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
101c6gmhM_
not modelled 99.1 21
PDB header:transcription
Chain: M: PDB Molecule:transcription elongation factor spt6,transcription
PDBTitle: structure of activated transcription complex pol ii-dsif-paf-spt6
102c2ba0A_
not modelled 99.1 21
PDB header:rna binding protein
Chain: A: PDB Molecule:archaeal exosome rna binding protein rrp4;
PDBTitle: archaeal exosome core
103c2z0sA_
not modelled 99.0 15
PDB header:rna binding protein
Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1;
PDBTitle: crystal structure of putative exosome complex rna-binding2 protein
104d2nn6b2
not modelled 99.0 16
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
105d2ba0a3
not modelled 99.0 24
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
106d1y14b1
not modelled 99.0 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
107c3go5A_
not modelled 99.0 16
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
108c2bh8B_
not modelled 99.0 41
PDB header:transcription
Chain: B: PDB Molecule:1b11;
PDBTitle: combinatorial protein 1b11
109d2nn6i1
not modelled 98.9 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
110c2je6I_
not modelled 98.9 20
PDB header:hydrolase
Chain: I: PDB Molecule:exosome complex rna-binding protein 1;
PDBTitle: structure of a 9-subunit archaeal exosome
111d2ctka1
not modelled 98.8 18
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
112d2je6a2
not modelled 98.8 14
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
113d1hh2p1
not modelled 98.8 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
114c5wwwA_
not modelled 98.7 22
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:rna-binding e3 ubiquitin-protein ligase mex3c;
PDBTitle: crystal structure of the kh1 domain of human rna-binding e3 ubiquitin-2 protein ligase mex-3c complex with rna
115d1tuaa1
not modelled 98.7 32
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
116c2jzxA_
not modelled 98.7 23
PDB header:rna binding protein
Chain: A: PDB Molecule:poly(rc)-binding protein 2;
PDBTitle: pcbp2 kh1-kh2 domains
117c1go3E_
not modelled 98.7 37
PDB header:transferase
Chain: E: PDB Molecule:dna-directed rna polymerase subunit e;
PDBTitle: structure of an archeal homolog of the eukaryotic rna polymerase ii2 rpb4/rpb7 complex
118c3n89B_
not modelled 98.7 15
PDB header:cell cycle
Chain: B: PDB Molecule:defective in germ line development protein 3, isoform a;
PDBTitle: kh domains
119d1we8a_
not modelled 98.7 23
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
120c2ba1B_
not modelled 98.7 18
PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite