Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2785c_(rpsO)_3093489_3093758
DateWed Aug 7 12:50:44 BST 2019
Unique Job IDa6aee4cd86f2852b
SequenceVALTAEQKKE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.742 Y:46.289 Z:37.295
Model (left) based on template c5o5jO_
Top template information
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s15;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
88 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jO_



100.0 89
PDB header:ribosome
Chain: O: PDB Molecule:30s ribosomal protein s15;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2d1vs5o1



100.0 52
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
3d1g1xb_



100.0 56
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
4d1a32a_



100.0 61
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
5c3ulwA_



100.0 51
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s15;
PDBTitle: 30s ribosomal protein s15 from campylobacter jejuni
6d1kuqa_



100.0 57
Fold:S15/NS1 RNA-binding domain
Superfamily:S15/NS1 RNA-binding domain
Family:Ribosomal protein S15
7c3j6vO_



100.0 26
PDB header:ribosome
Chain: O: PDB Molecule:28s ribosomal protein s15, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
8c3bbnO_



99.9 39
PDB header:ribosome
Chain: O: PDB Molecule:ribosomal protein s15;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
9c2xzmO_



99.2 19
PDB header:ribosome
Chain: O: PDB Molecule:rps13e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
10c5xyiN_



99.1 27
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s13, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
11c3izbO_



99.1 14
PDB header:ribosome
Chain: O: PDB Molecule:40s ribosomal protein rps13 (s15p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
12c3u5cN_



98.8 26
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s13;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
13c1yshE_



97.9 25
PDB header:structural protein/rna
Chain: E: PDB Molecule:40s ribosomal protein s13;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
14c3zeyG_



97.8 28
PDB header:ribosome
Chain: G: PDB Molecule:40s ribosomal protein s13, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
15c3j20Q_



96.2 43
PDB header:ribosome
Chain: Q: PDB Molecule:30s ribosomal protein s15p/s13e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
16c1s1hO_



96.0 19
PDB header:ribosome
Chain: O: PDB Molecule:40s ribosomal protein s13;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
17c4ar9A_



43.8 30
PDB header:hydrolase
Chain: A: PDB Molecule:collagenase colt;
PDBTitle: crystal structure of the peptidase domain of collagenase t2 from clostridium tetani at 1.69 angstrom resolution.
18c4ar1A_



38.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:colh protein;
PDBTitle: crystal structure of the peptidase domain of collagenase h from2 clostridium histolyticum at 2.01 angstrom resolution.
19d1y0ua_



32.3 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
20c2y50A_



26.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:collagenase;
PDBTitle: crystal structure of collagenase g from clostridium2 histolyticum at 2.80 angstrom resolution
21c5ajaC_



not modelled 22.4 38
PDB header:viral protein
Chain: C: PDB Molecule:sam domain and hd domain-containing protein;
PDBTitle: crystal structure of mandrill samhd1 (amino acid residues 1-114)2 bound to vpx isolated from mandrill and human dcaf1 (amino3 acid residues 1058-1396)
22c5dukA_



not modelled 21.7 28
PDB header:transcription
Chain: A: PDB Molecule:putative dna binding protein;
PDBTitle: n-terminal structure of putative dna binding transcription factor from2 thermoplasmatales archaeon scgc ab-539-n05
23c2ke4A_



not modelled 21.5 26
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
24d1sxjd1



not modelled 21.0 15
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
25c2zvnF_



not modelled 17.6 11
PDB header:signaling protein/transcription
Chain: F: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: nemo cozi domain incomplex with diubiquitin in p212121 space group
26c3uosH_



not modelled 15.2 25
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l10;
PDBTitle: crystal structure of release factor rf3 trapped in the gtp state on a2 rotated conformation of the ribosome (without viomycin)
27c5frgA_



not modelled 13.7 21
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
28c2lhuA_



not modelled 13.5 14
PDB header:structural protein
Chain: A: PDB Molecule:mybpc3 protein;
PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain
29c3f1iH_



not modelled 11.3 17
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
30c4kmfA_



not modelled 11.2 19
PDB header:transferase/dna
Chain: A: PDB Molecule:interferon-inducible and double-stranded-dependent eif-
PDBTitle: crystal structure of zalpha domain from carassius auratus pkz in2 complex with z-dna
31c2vogB_



not modelled 10.8 67
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-modifying factor;
PDBTitle: structure of mouse a1 bound to the bmf bh3-domain
32c4wyhA_



not modelled 10.7 35
PDB header:replication
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of prix from the hyperthermophilic archaeon2 sulfolobus solfataricus
33c2hjqA_



not modelled 10.4 21
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical protein yqbf;
PDBTitle: nmr structure of bacillus subtilis protein yqbf, northeast2 structural genomics target sr449
34c2v4hA_



not modelled 9.8 11
PDB header:transcription
Chain: A: PDB Molecule:nf-kappa-b essential modulator;
PDBTitle: nemo cc2-lz domain - 1d5 darpin complex
35c4lb6B_



not modelled 9.6 16
PDB header:transferase/dna
Chain: B: PDB Molecule:protein kinase containing z-dna binding domains;
PDBTitle: crystal structure of pkz zalpha in complex with ds(cg)6 (tetragonal2 form)
36c3nqwB_



not modelled 8.9 13
PDB header:hydrolase
Chain: B: PDB Molecule:cg11900;
PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses
37c1ye9E_



not modelled 8.7 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:catalase hpii;
PDBTitle: crystal structure of proteolytically truncated catalase2 hpii from e. coli
38c5tzqD_



not modelled 8.5 67
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-modifying factor;
PDBTitle: crystal structure of fpv039:bmf bh3 complex
39c5tzqC_



not modelled 8.5 67
PDB header:apoptosis
Chain: C: PDB Molecule:bcl-2-modifying factor;
PDBTitle: crystal structure of fpv039:bmf bh3 complex
40c2ymyB_



not modelled 8.3 83
PDB header:apoptosis
Chain: B: PDB Molecule:ras association domain-containing protein 5;
PDBTitle: structure of the murine nore1-sarah domain
41c2khnA_



not modelled 8.3 17
PDB header:signaling protein
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: nmr solution structure of the eh 1 domain from human2 intersectin-1 protein. northeast structural genomics3 consortium target hr3646e.
42c3rj1Q_



not modelled 8.2 13
PDB header:transcription
Chain: Q: PDB Molecule:mediator of rna polymerase ii transcription subunit 8;
PDBTitle: architecture of the mediator head module
43d2jdia1



not modelled 8.1 13
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
44d3bj1b1



not modelled 7.3 12
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
45c2f5xC_



not modelled 7.3 17
PDB header:transport protein
Chain: C: PDB Molecule:bugd;
PDBTitle: structure of periplasmic binding protein bugd
46c3cuoB_



not modelled 6.9 20
PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator ygav;
PDBTitle: crystal structure of the predicted dna-binding transcriptional2 regulator from e. coli
47c4bj5A_



not modelled 6.7 35
PDB header:transcription
Chain: A: PDB Molecule:protein rif2;
PDBTitle: crystal structure of rif2 in complex with the c-terminal domain of2 rap1 (rap1-rct)
48c5d1vB_



not modelled 6.7 9
PDB header:oxygen transport
Chain: B: PDB Molecule:globin;
PDBTitle: crystal structure and thermal stability of hemoglobin from2 thermophilic phototrophic bacterium chloroflexus aurantiacus
49d1sxjb1



not modelled 6.6 19
Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
50c3qkuC_



not modelled 6.6 16
PDB header:replication
Chain: C: PDB Molecule:dna double-strand break repair protein mre11;
PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
51d1fx0a1



not modelled 6.4 10
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
52d3crda_



not modelled 6.4 8
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
53d2f43a1



not modelled 6.2 13
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
54d1biaa1



not modelled 6.2 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Biotin repressor-like
55c3katA_



not modelled 5.9 20
PDB header:apoptosis
Chain: A: PDB Molecule:nacht, lrr and pyd domains-containing protein 1;
PDBTitle: crystal structure of the card domain of the human nlrp1 protein,2 northeast structural genomics consortium target hr3486e
56d2zjrw1



not modelled 5.6 27
Fold:Ribosomal protein L30p/L7e
Superfamily:Ribosomal protein L30p/L7e
Family:Ribosomal protein L30p/L7e
57d1spgb_



not modelled 5.5 24
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
58c1m7lA_



not modelled 5.5 21
PDB header:sugar binding protein
Chain: A: PDB Molecule:pulmonary surfactant-associated protein d;
PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d
59c3qkrC_



not modelled 5.5 16
PDB header:replication
Chain: C: PDB Molecule:dna double-strand break repair protein mre11;
PDBTitle: mre11 rad50 binding domain bound to rad50
60c3ac6A_



not modelled 5.3 14
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase 2;
PDBTitle: crystal structure of purl from thermus thermophilus
61c2b19A_



not modelled 5.3 50
PDB header:neuropeptide
Chain: A: PDB Molecule:neuropeptide k;
PDBTitle: solution structure of mammalian tachykinin peptide,2 neuropeptide k
62d1gyza_



not modelled 5.2 10
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
63c2nz7A_



not modelled 5.2 12
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4;
PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1
64d2jxca1



not modelled 5.2 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:Eps15 homology domain (EH domain)
65c3j3vY_



not modelled 5.2 33
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
66c3m20A_



not modelled 5.1 23
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
67d2b7ea1



not modelled 5.1 36
Fold:Another 3-helical bundle
Superfamily:FF domain
Family:FF domain
68c3piwA_



not modelled 5.1 14
PDB header:cytokine
Chain: A: PDB Molecule:type i interferon 2;
PDBTitle: zebrafish interferon 2
69c5o60a_



not modelled 5.1 27
PDB header:ribosome
Chain: A: PDB Molecule:23s rrna;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
70c6dlcA_



not modelled 5.1 13
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein dhd1:234_a;
PDBTitle: designed protein dhd1:234_a, designed protein dhd1:234_b
71d1skyb1



not modelled 5.1 9
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
72c2l4aA_



not modelled 5.1 21
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
73d1x4ta1



not modelled 5.0 20
Fold:Long alpha-hairpin
Superfamily:ISY1 domain-like
Family:ISY1 N-terminal domain-like

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