Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2791c_(-)_3100212_3101591
DateWed Aug 7 12:50:45 BST 2019
Unique Job ID3c39e77cdbcbb2b5
SequenceMAKFEIPEGW ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.285 Y:52.931 Z:63.449
Model (left) based on template c6e7aY_
Top template information
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
Confidence and coverage
Confidence: 98.7% Coverage: 41%
189 residues ( 41% of your sequence) have been modelled with 98.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6e7aY_
98.7 19
PDB header:dna binding protein/dna/rna
Chain: Y: PDB Molecule:casx;
PDBTitle: casx-grna-dna(30bp) state ii
2c5id6A_
98.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:cpf1;
PDBTitle: structure of cpf1/rna complex
3c6iv6A_
98.2 20
PDB header:immune system/rna
Chain: A: PDB Molecule:nuclease;
PDBTitle: cryo-em structure of acrva5-acetylated mbcas12a in complex with crrna
4c5wtiZ_
98.1 19
PDB header:hydrolase/dna/rna
Chain: Z: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein in complex with2 crrna and dna
5c5mgaA_
98.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: structure of the cpf1 endonuclease r-loop complex after dna cleavage
6c5b43A_
98.0 21
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of acidaminococcus sp. cpf1 in complex with crrna2 and target dna
7c5nfvA_
97.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cpf1;
PDBTitle: crystal structure of catalytically inactive fncas12 mutant bound to an2 r-loop structure containing a pre-crrna mimic and full-length dna3 target
8c5wqeA_
97.5 19
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of alicyclobacillus acidoterrestris c2c1 in complex2 with single-guide rna at 3.1 angstrom resolution
9c5u31A_
96.7 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:crispr-associated endonuclease c2c1;
PDBTitle: crystal structure of aacc2c1-sgrna-8mer substrate dna ternary complex
10c2gb5B_
95.3 28
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
11d1hk8a_
94.0 18
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
12c1hk8A_
94.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
13c4u3eA_
94.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
14c3ky9B_
93.4 20
PDB header:apoptosis
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: autoinhibited vav1
15c2vrwB_
93.2 17
PDB header:signaling protein
Chain: B: PDB Molecule:proto-oncogene vav;
PDBTitle: critical structural role for the ph and c1 domains of the2 vav1 exchange factor
16c5fz5M_
93.1 18
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
17c1yuzB_
92.5 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
18c3bjiA_
92.4 20
PDB header:signaling protein
Chain: A: PDB Molecule:proto-oncogene vav;
PDBTitle: structural basis of promiscuous guanine nucleotide exchange2 by the t-cell essential vav1
19c2qa4Z_
91.9 27
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
20c4b6ap_
91.7 31
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
21c4a17Y_
not modelled 91.5 27
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
22c3k7aM_
not modelled 91.3 21
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
23d1ffkw_
not modelled 91.3 27
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
24c3cc4Z_
not modelled 91.2 27
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
25d2akla2
not modelled 91.2 16
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
26c6f42V_
not modelled 91.1 15
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
27c3cngC_
not modelled 91.0 29
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
28c3zf7o_
not modelled 91.0 31
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
29d1vqoz1
not modelled 91.0 27
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
30c3izrm_
not modelled 91.0 23
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
31c3j39p_
not modelled 90.9 27
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
32c2aklA_
not modelled 90.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
33c2hr5B_
not modelled 90.7 33
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
34c2lcqA_
not modelled 90.6 14
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
35c3j21i_
not modelled 90.6 38
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
36c5iy9M_
not modelled 90.6 21
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
37c2zkrz_
not modelled 90.4 31
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
38d1jj2y_
not modelled 90.3 27
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
39d1pfta_
not modelled 90.3 17
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
40c1yshD_
not modelled 90.2 23
PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
41c3k1fM_
not modelled 90.1 18
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
42c1i3qI_
not modelled 89.8 15
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
43c4v1oM_
not modelled 89.8 22
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
44c5ijlA_
not modelled 89.5 32
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
45c3zyqA_
not modelled 89.2 15
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
46c1s1i9_
not modelled 89.2 31
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
47c1dvbA_
not modelled 89.1 43
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
48c5flmI_
not modelled 88.9 17
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
49c6cnbR_
not modelled 88.8 15
PDB header:transcription/dna
Chain: R: PDB Molecule:transcription factor iiib 70 kda subunit,tata-box-binding
PDBTitle: yeast rna polymerase iii initial transcribing complex
50c6hmsB_
not modelled 88.7 32
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
51c1ee8A_
not modelled 88.7 26
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
52c1nnjA_
not modelled 88.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna
53c3jyw9_
not modelled 88.5 31
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
54d2k4xa1
not modelled 88.0 26
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
55d1dl6a_
not modelled 87.9 15
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
56c6g5iy_
not modelled 87.3 24
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
57c2opfA_
not modelled 87.1 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
58c2qkdA_
not modelled 86.9 19
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
59c5iy9Q_
not modelled 86.8 25
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
60c1dvpA_
not modelled 86.5 15
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
61c2kdxA_
not modelled 86.2 26
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
62c2f5qA_
not modelled 86.2 26
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
63c4bpo9_
not modelled 86.1 24
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
64c3wwnB_
not modelled 85.7 31
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
65c4c2mX_
not modelled 85.4 24
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
66c1k82D_
not modelled 85.3 30
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
67c2xzm9_
not modelled 85.2 18
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
68c2xzn9_
not modelled 84.8 18
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
69d2fiya1
not modelled 84.6 19
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
70d1twfi2
not modelled 84.5 25
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
71c3h0gI_
not modelled 84.2 17
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
72c2f9iD_
not modelled 83.8 16
PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: crystal structure of the carboxyltransferase subunit of acc from2 staphylococcus aureus
73c2ba1B_
not modelled 83.4 19
PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core
74c1kcfB_
not modelled 82.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
75c5fywW_
not modelled 82.1 15
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
76d1kcfa2
not modelled 82.0 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Mitochondrial resolvase ydc2 catalytic domain
77d2f9yb1
not modelled 81.5 24
Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
78c2f9yB_
not modelled 81.5 24
PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
79c4ifdI_
not modelled 81.4 11
PDB header:hydrolase/rna
Chain: I: PDB Molecule:exosome complex component csl4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
80d1qypa_
not modelled 80.7 28
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
81d2j0151
not modelled 80.7 23
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
82c3j3v0_
not modelled 80.5 27
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
83c5xonU_
not modelled 79.9 17
PDB header:transcription/rna
Chain: U: PDB Molecule:general transcription elongation factor tfiis;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
84d2zjrz1
not modelled 79.6 25
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
85c3w0fA_
not modelled 79.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
86c3pfqA_
not modelled 79.3 21
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c beta type;
PDBTitle: crystal structure and allosteric activation of protein kinase c beta2 ii
87d1x3za1
not modelled 79.3 32
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
88d2ct7a1
not modelled 79.0 17
Fold:RING/U-box
Superfamily:RING/U-box
Family:IBR domain
89c2k5cA_
not modelled 78.9 50
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
90c1nuiA_
not modelled 78.4 21
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
91c5x51X_
not modelled 78.2 23
PDB header:transferase
Chain: X: PDB Molecule:rna polymerase subunit, found in rna polymerase complexes
PDBTitle: rna polymerase ii from komagataella pastoris (type-3 crystal)
92c2pziA_
not modelled 78.0 26
PDB header:transferase
Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng;
PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017
93c2eliA_
not modelled 77.7 21
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c alpha type;
PDBTitle: solution structure of the second phorbol2 esters/diacylglycerol binding domain of human protein3 kinase c alpha type
94c3gn5B_
not modelled 77.3 19
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
95c2nb9A_
not modelled 77.2 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
96c3bvoA_
not modelled 77.0 29
PDB header:chaperone
Chain: A: PDB Molecule:co-chaperone protein hscb, mitochondrial precursor;
PDBTitle: crystal structure of human co-chaperone protein hscb
97d1yuza2
not modelled 77.0 29
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
98d1nnqa2
not modelled 76.9 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
99c2nn6I_
not modelled 76.4 11
PDB header:hydrolase/transferase
Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
100c3h0gL_
not modelled 76.4 28
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
101c1y1yS_
not modelled 76.1 21
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
102c3eswA_
not modelled 76.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
103c1pqvS_
not modelled 75.7 21
PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
104d1k3xa3
not modelled 75.6 26
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
105c3ndjA_
not modelled 75.4 38
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
106d1tdza3
not modelled 75.2 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
107c4rvgA_
not modelled 75.2 26
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
108c6gymW_
not modelled 75.1 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
109d1ptqa_
not modelled 74.8 18
Fold:Cysteine-rich domain
Superfamily:Cysteine-rich domain
Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
110d1tbna_
not modelled 74.8 21
Fold:Cysteine-rich domain
Superfamily:Cysteine-rich domain
Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
111c2enzA_
not modelled 74.7 21
PDB header:transferase
Chain: A: PDB Molecule:protein kinase c theta type;
PDBTitle: solution structure of the second c1 domain from human2 protein kinase c theta
112c2ja6L_
not modelled 74.7 16
PDB header:transferase
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 kda
PDBTitle: cpd lesion containing rna polymerase ii elongation complex b
113c1y8fA_
not modelled 74.6 12
PDB header:endocytosis/exocytosis,signaling protein
Chain: A: PDB Molecule:unc-13 homolog a;
PDBTitle: solution structure of the munc13-1 c1-domain
114c5flmL_
not modelled 74.2 24
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of transcribing mammalian rna polymerase ii
115c3a44D_
not modelled 74.1 19
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
116c5oqjW_
not modelled 74.1 23
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
117d1ee8a3
not modelled 74.1 26
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
118c4zlhB_
not modelled 73.9 38
PDB header:metal binding protein
Chain: B: PDB Molecule:lipopolysaccharide assembly protein b;
PDBTitle: structure of the lapb cytoplasmic domain at 2 angstroms
119c5iycU_
not modelled 73.8 21
PDB header:transcription, transferase/dna
Chain: U: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: human core-pic in the initial transcribing state
120d1zbdb_
not modelled 73.7 16
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:FYVE, a phosphatidylinositol-3-phosphate binding domain

Binding site prediction 

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite