Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2801A_(RVBD2801A)_3110517_3110747
DateWed Aug 7 12:50:46 BST 2019
Unique Job ID979795da78f0a15e
SequenceVKLSVSLSDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.219 Y:28.412 Z:24.898
Model (left) based on template d2bj7a1
Top template information
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
Confidence and coverage
Confidence: 97.7% Coverage: 50%
38 residues ( 50% of your sequence) have been modelled with 97.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
65 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bj7a1



97.7 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
2c2bj3D_



97.6 21
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
3d2hzaa1



97.5 29
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c1q5vB_



97.5 26
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
5d2hzab1



97.4 29
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
6c2ca9B_



97.4 32
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
7c5cegC_



94.5 19
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
8c5yrzC_



93.8 26
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
9c3kxeD_



93.3 22
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
10c6g1nB_



92.4 29
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
11c2k5jB_



88.4 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
12c4me7E_



82.1 31
PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:antitoxin endoai;
PDBTitle: crystal structure of bacillus subtilis toxin mazf in complex with2 cognate antitoxin maze
13c4p7dA_



78.0 25
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
14c6a6xC_



55.0 30
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
15d2cpga_



51.9 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
16c1ea4K_



51.9 30
PDB header:gene regulation/dna
Chain: K: PDB Molecule:transcriptional repressor copg;
PDBTitle: transcriptional repressor copg/22bp dsdna complex
17c6qeqD_



51.6 14
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
18c2mdvB_



27.1 33
PDB header:de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: nmr structure of beta alpha alpha 38
19d2vy4a1



21.2 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:CHHC finger
20c5cwwC_



16.0 33
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup159;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
21d1jdfa2



not modelled 15.0 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
22c1mszA_



not modelled 14.9 21
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: solution structure of the r3h domain from human smubp-2
23d1msza_



not modelled 14.9 21
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
24d1rvka2



not modelled 13.3 33
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
25c4l6tA_



not modelled 13.0 46
PDB header:hydrolase
Chain: A: PDB Molecule:ecxa;
PDBTitle: gm1 bound form of the ecx ab5 holotoxin
26d2chra2



not modelled 12.9 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
27d2hh6a1



not modelled 12.6 32
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
28d1t98a1



not modelled 12.5 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MukF N-terminal domain-like
29d1bqga2



not modelled 12.0 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
30d1jpma2



not modelled 10.6 33
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
31d1wuea2



not modelled 10.3 40
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
32c1t98B_



not modelled 10.2 33
PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of mukf(1-287)
33c2rrfA_



not modelled 10.2 14
PDB header:unknown function
Chain: A: PDB Molecule:zinc finger fyve domain-containing protein 21;
PDBTitle: the solution structure of the c-terminal region of zinc finger fyve2 domain-containing protein 21
34d2gl5a2



not modelled 9.9 40
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
35d2mnra2



not modelled 9.9 40
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
36d1nu5a2



not modelled 9.8 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
37d1wufa2



not modelled 9.7 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
38d2b0la1



not modelled 9.6 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CodY HTH domain
39d1lqaa_



not modelled 8.8 29
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
40d1yeya2



not modelled 8.8 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
41c4n2sA_



not modelled 8.6 18
PDB header:splicing/rna
Chain: A: PDB Molecule:tha8 rna binding protein;
PDBTitle: crystal structure of tha8 in complex with zm1a-6 rna
42d1sjda2



not modelled 8.3 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
43c5b0nA_



not modelled 8.1 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase ipah9.8;
PDBTitle: structure of shigella effector lrr domain
44d2c5ra1



not modelled 7.9 50
Fold:Phage replication organizer domain
Superfamily:Phage replication organizer domain
Family:Phage replication organizer domain
45c3jviA_



not modelled 7.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
46c4h3uB_



not modelled 7.5 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of hypothetical protein with ketosteroid isomerase-2 like protein fold from catenulispora acidiphila dsm 44928
47d2gdqa2



not modelled 6.9 20
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
48d1jpdx2



not modelled 6.7 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
49d2ezwa1



not modelled 6.5 28
Fold:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Superfamily:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
Family:Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit
50c4f9kA_



not modelled 6.4 22
PDB header:transferase regulator
Chain: A: PDB Molecule:camp-dependent protein kinase type i-beta regulatory
PDBTitle: crystal structure of human camp-dependent protein kinase type i-beta2 regulatory subunit (fragment 11-73), northeast structural genomics3 consortium (nesg) target hr8613a
51c5ey0A_



not modelled 6.4 35
PDB header:transcription
Chain: A: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: crystal structure of cody from staphylococcus aureus with gtp and ile
52d1muca2



not modelled 6.3 60
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
53c3tadB_



not modelled 6.1 20
PDB header:protein binding
Chain: B: PDB Molecule:liprin-alpha-2;
PDBTitle: crystal structure of the liprin-alpha/liprin-beta complex
54d1tzza2



not modelled 6.1 53
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
55d1r0ma2



not modelled 6.0 27
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
56c4zriC_



not modelled 5.8 50
PDB header:signaling protein/transferase
Chain: C: PDB Molecule:serine/threonine-protein kinase lats2;
PDBTitle: crystal structure of merlin-ferm and lats2
57c4zriD_



not modelled 5.7 50
PDB header:signaling protein/transferase
Chain: D: PDB Molecule:serine/threonine-protein kinase lats2;
PDBTitle: crystal structure of merlin-ferm and lats2
58c5o5jR_



not modelled 5.7 30
PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s18 2;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
59d1h99a1



not modelled 5.6 30
Fold:PTS-regulatory domain, PRD
Superfamily:PTS-regulatory domain, PRD
Family:PTS-regulatory domain, PRD
60d2fq4a2



not modelled 5.6 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
61c2pijB_



not modelled 5.3 24
PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
62c3h87D_



not modelled 5.3 39
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
63c6g1oA_



not modelled 5.3 21
PDB header:lyase
Chain: A: PDB Molecule:isocitrate lyase;
PDBTitle: structure of pseudomonas aeruginosa isocitrate lyase, icl
64d2ftra1



not modelled 5.2 27
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:EthD-like
65d1q2za_



not modelled 5.1 20
Fold:alpha-alpha superhelix
Superfamily:C-terminal domain of Ku80
Family:C-terminal domain of Ku80

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