Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2801c_(-)_3110177_3110533
DateWed Aug 7 12:50:46 BST 2019
Unique Job IDd7bfe077deef8d6b
SequenceVMRRGEIWQV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.159 Y:33.408 Z:36.964
Model (left) based on template c5hjzA_
Top template information
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
Confidence and coverage
Confidence: 99.9% Coverage: 97%
114 residues ( 97% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5hjzA_



99.9 98
PDB header:hydrolase/rna
Chain: A: PDB Molecule:endoribonuclease mazf9;
PDBTitle: structure of m. tuberculosis mazf-mt1 (rv2801c) in complex with rna
2c4mzpC_



99.9 30
PDB header:hydrolase
Chain: C: PDB Molecule:mazf mrna interferase;
PDBTitle: mazf from s. aureus crystal form iii, c2221, 2.7 a
3d1ne8a_



99.9 31
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
4d1m1fa_



99.9 33
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
5c5hk3B_



99.9 34
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endoribonuclease mazf6;
PDBTitle: crystal structure of m. tuberculosis mazf-mt3 t52d-f62d mutant in2 complex with dna
6c5xe3B_



99.9 23
PDB header:hydrolase/antitoxin
Chain: B: PDB Molecule:endoribonuclease mazf4;
PDBTitle: endoribonuclease in complex with its cognate antitoxin from2 mycobacterial species
7d1ub4a_



99.9 38
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:Kid/PemK
8c5wygC_



99.9 35
PDB header:hydrolase
Chain: C: PDB Molecule:probable endoribonuclease mazf7;
PDBTitle: the crystal structure of the apo form of mtb mazf
9c5ccaA_



99.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease mazf3;
PDBTitle: crystal structure of mtb toxin
10c3jrzA_



92.3 16
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
11d3vuba_



89.4 17
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
12c5ikjA_



61.7 33
PDB header:transcription
Chain: A: PDB Molecule:cryptic loci regulator 2;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
13c6n1bA_



52.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-binding protein;
PDBTitle: crystal structure of an n-acetylgalactosamine deacetylase from f.2 plautii in complex with blood group b trisaccharide
14c3mxuA_



36.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from bartonella2 henselae
15d1onla_



28.4 23
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
16c2edgA_



27.8 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: solution structure of the gcv_h domain from mouse glycine
17c3llrA_



24.0 10
PDB header:transferase
Chain: A: PDB Molecule:dna (cytosine-5)-methyltransferase 3a;
PDBTitle: crystal structure of the pwwp domain of human dna (cytosine-5-)-2 methyltransferase 3 alpha
18d1h3za_



21.3 13
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
19c3a8jF_



20.8 21
PDB header:transferase/transport protein
Chain: F: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of et-ehred complex
20c5vc8B_



19.8 9
PDB header:dna binding protein
Chain: B: PDB Molecule:histone-lysine n-methyltransferase nsd2;
PDBTitle: crystal structure of the whsc1 pwwp1 domain
21c3iftA_



not modelled 19.5 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage system protein h from2 mycobacterium tuberculosis, using x-rays from the compact light3 source.
22d1ex0a1



not modelled 19.3 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
23c2l89A_



not modelled 18.9 12
PDB header:protein binding
Chain: A: PDB Molecule:pwwp domain-containing protein 1;
PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna
24d1okja2



not modelled 17.2 15
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
25d1cxqa_



not modelled 16.5 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
26d1hpca_



not modelled 16.0 23
Fold:Barrel-sandwich hybrid
Superfamily:Single hybrid motif
Family:Biotinyl/lipoyl-carrier proteins and domains
27c4rmoA_



not modelled 16.0 15
PDB header:toxin/rna
Chain: A: PDB Molecule:cptn toxin;
PDBTitle: crystal structure of the cptin type iii toxin-antitoxin system from2 eubacterium rectale
28c1ssfA_



not modelled 14.8 26
PDB header:cell cycle
Chain: A: PDB Molecule:transformation related protein 53 binding
PDBTitle: solution structure of the mouse 53bp1 fragment (residues2 1463-1617)
29c2jysA_



not modelled 13.2 0
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
30c5a35A_



not modelled 13.0 7
PDB header:transport protein
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: crystal structure of glycine cleavage protein h-like (gcvh-l)2 from streptococcus pyogenes
31c4mnoA_



not modelled 13.0 29
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 1a;
PDBTitle: crystal structure of aif1a from pyrococcus abyssi
32c2zkrt_



not modelled 12.9 18
PDB header:ribosomal protein/rna
Chain: T: PDB Molecule:rna expansion segment es39 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
33c2fqpD_



not modelled 12.2 14
PDB header:metal binding protein
Chain: D: PDB Molecule:hypothetical protein bp2299;
PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
34c2dgyA_



not modelled 11.9 40
PDB header:translation
Chain: A: PDB Molecule:mgc11102 protein;
PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein
35d2daqa1



not modelled 11.9 17
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
36c3c19A_



not modelled 11.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19
37c6bwqB_



not modelled 11.2 16
PDB header:metal binding protein
Chain: B: PDB Molecule:pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel
PDBTitle: larc2, the c-terminal domain of a cyclometallase involved in the2 synthesis of the npn cofactor of lactate racemase, in complex with3 mnctp
38c2ka7A_



not modelled 10.7 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:glycine cleavage system h protein;
PDBTitle: nmr solution structure of tm0212 at 40 c
39d1rz4a1



not modelled 10.6 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
40c1cffB_



not modelled 10.5 40
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
41c3bxpA_



not modelled 9.7 8
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase/esterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_2923) from2 lactobacillus plantarum wcfs1 at 1.70 a resolution
42c4l3uA_



not modelled 9.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3571 family protein (abaye3784) from2 acinetobacter baumannii aye at 1.95 a resolution
43c4eyzB_



not modelled 9.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:cellulosome-related protein module from ruminococcus
PDBTitle: crystal structure of an uncommon cellulosome-related protein module2 from ruminococcus flavefaciens that resembles papain-like cysteine3 peptidases
44c2of3A_



not modelled 9.3 16
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
45c2oqkA_



not modelled 8.8 27
PDB header:translation
Chain: A: PDB Molecule:putative translation initiation factor eif-1a;
PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a
46c5ofxF_



not modelled 8.8 24
PDB header:sugar binding protein
Chain: F: PDB Molecule:plla;
PDBTitle: plla lectin, trisaccharide complex
47c6fosE_



not modelled 8.5 23
PDB header:photosynthesis
Chain: E: PDB Molecule:photosystem i iron-sulfur center subunit vii;
PDBTitle: cyanidioschyzon merolae photosystem i
48c5zc2B_



not modelled 7.7 16
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
49c3j81i_



not modelled 7.6 29
PDB header:ribosome
Chain: I: PDB Molecule:es8;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
50c4xxlA_



not modelled 7.1 30
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c class i;
PDBTitle: crystal structure of class 1 cytochrome mtod from sideroxydans2 lithotrophicus es-1
51c3d55A_



not modelled 7.0 25
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
52c5cz1B_



not modelled 6.7 19
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain of mmtv integrase
53d1zaka2



not modelled 6.7 24
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
54d1e5ra_



not modelled 6.4 32
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Type II Proline 3-hydroxylase (proline oxidase)
55d1jt8a_



not modelled 6.4 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
56d2uubm1



not modelled 6.3 20
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
57c5o5jM_



not modelled 6.2 8
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
58c6gu1B_



not modelled 6.2 38
PDB header:unknown function
Chain: B: PDB Molecule:secreted rxlr effector peptide protein, putative;
PDBTitle: sfi3 effector protein from the oomycete plant pathogen phytophthora2 infestans
59d1kt0a3



not modelled 6.1 38
Fold:FKBP-like
Superfamily:FKBP-like
Family:FKBP immunophilin/proline isomerase
60c3bcxA_



not modelled 6.1 10
PDB header:transferase
Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase;
PDBTitle: e1 dehydrase
61c3pfsA_



not modelled 6.1 10
PDB header:protein binding
Chain: A: PDB Molecule:bromodomain and phd finger-containing protein 3;
PDBTitle: pwwp domain of human bromodomain and phd finger-containing protein 3
62c4p7xA_



not modelled 6.1 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-proline cis-4-hydroxylase;
PDBTitle: l-pipecolic acid-bound l-proline cis-4-hydroxylase
63c3oeiB_



not modelled 6.0 25
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
64d2nlua1



not modelled 6.0 10
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
65c4bpp0_



not modelled 5.9 18
PDB header:ribosome
Chain: 0: PDB Molecule:translation initiation factor eif-1a family protein;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 4
66d1xgsa2



not modelled 5.9 18
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
67c4z8aA_



not modelled 5.8 44
PDB header:rim-binding protein
Chain: A: PDB Molecule:rim-binding protein, isoform f;
PDBTitle: sh3-iii of drosophila rim-binding protein bound to a cacophony derived2 peptide
68d1qp3a_



not modelled 5.8 14
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
69c6g25A_



not modelled 5.8 13
PDB header:oncoprotein
Chain: A: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: x-ray structure of nsd3-pwwp1 in complex with compound 4
70c4ipaC_



not modelled 5.6 18
PDB header:hydrolase
Chain: C: PDB Molecule:putative curved dna-binding protein;
PDBTitle: structure of a thermophilic arx1
71c1fxzC_



not modelled 5.5 31
PDB header:plant protein
Chain: C: PDB Molecule:glycinin g1;
PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer
72c2jnsA_



not modelled 5.5 13
PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain
73c2lfeA_



not modelled 5.4 15
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw2;
PDBTitle: solution nmr structure of n-terminal domain of human e3 ubiquitin-2 protein ligase hecw2, northeast structural genomics consortium (nesg)3 target ht6306a
74d1k1va_



not modelled 5.4 21
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
75d1b6aa2



not modelled 5.3 18
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase
76c4yknA_



not modelled 5.3 18
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha,
PDBTitle: pi3k alpha lipid kinase with active site inhibitor
77d2q3za1



not modelled 5.2 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
78d1c0ma2



not modelled 5.2 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
79c2ovcA_



not modelled 5.1 17
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily kqt member 4;
PDBTitle: crystal structure of a coiled-coil tetramerization domain from kv7.42 channels
80c2odmA_



not modelled 5.1 20
PDB header:unknown function
Chain: A: PDB Molecule:upf0358 protein mw0995;
PDBTitle: crystal structure of s. aureus ylan, an essential leucine rich protein2 involved in the control of cell shape
81d1kp0a2



not modelled 5.1 25
Fold:Creatinase/aminopeptidase
Superfamily:Creatinase/aminopeptidase
Family:Creatinase/aminopeptidase

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