Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2802c_(-)_3110790_3111833
DateWed Aug 7 12:50:46 BST 2019
Unique Job IDb38a1bfe73f80894
SequenceMARQPLEQRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.148 Y:22.591 Z:33.889
Model (left) based on template c2owaB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
Confidence and coverage
Confidence: 69.5% Coverage: 14%
47 residues ( 14% of your sequence) have been modelled with 69.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2owaB_
69.5 26
PDB header:protein transport
Chain: B: PDB Molecule:arfgap-like finger domain containing protein;
PDBTitle: crystal structure of putative gtpase activating protein for2 adp ribosylation factor from cryptosporidium parvum3 (cgd5_1040)
2c6ro4G_
69.1 14
PDB header:translocase
Chain: G: PDB Molecule:dna repair protein complementing xp-a cells;
PDBTitle: structure of the core tfiih-xpa-dna complex
3d2cuqa1
53.8 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
4d1dcqa2
49.0 16
Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:Pyk2-associated protein beta ARF-GAP domain
5c3d00A_
49.0 27
PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
6c2b0oF_
48.8 24
PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
7c1nuiA_
47.8 25
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
8c5gjqZ_
41.6 29
PDB header:hydrolase
Chain: Z: PDB Molecule:26s proteasome non-atpase regulatory subunit 2;
PDBTitle: structure of the human 26s proteasome bound to usp14-ubal
9c1x68A_
41.5 20
PDB header:protein binding
Chain: A: PDB Molecule:fhl5 protein;
PDBTitle: solution structures of the c-terminal lim domain of human2 fhl5 protein
10c3lvrE_
36.8 23
PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
11c1dcqA_
36.0 17
PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats of2 papbeta.
12d1u5ka2
36.0 28
Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
13c3fehA_
34.0 30
PDB header:hydrolase activator
Chain: A: PDB Molecule:centaurin-alpha-1;
PDBTitle: crystal structure of full length centaurin alpha-1
14c1u5kA_
32.9 29
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
15c6mifA_
32.7 25
PDB header:signaling protein
Chain: A: PDB Molecule:lim and senescent cell antigen-like-containing domain
PDBTitle: lim5 domain of pinch1 protein
16c1v6gA_
32.7 29
PDB header:metal binding protein
Chain: A: PDB Molecule:actin binding lim protein 2;
PDBTitle: solution structure of the lim domain of the human actin2 binding lim protein 2
17c4gndC_
32.2 26
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: crystal structure of nsd3 tandem phd5-c5hch domains
18c2dloA_
31.5 17
PDB header:cell adhesion
Chain: A: PDB Molecule:thyroid receptor-interacting protein 6;
PDBTitle: solution structure of the second lim domain of human2 thyroid receptor-interacting protein 6
19d2g45a1
29.9 29
Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
20c3o47A_
29.3 22
PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
21c2iqjB_
not modelled 28.5 26
PDB header:protein transport
Chain: B: PDB Molecule:stromal membrane-associated protein 1-like;
PDBTitle: crystal structure of the gap domain of smap1l (loc64744) stromal2 membrane-associated protein 1-like
22c1x64A_
not modelled 28.2 24
PDB header:contractile protein
Chain: A: PDB Molecule:alpha-actinin-2 associated lim protein;
PDBTitle: solution structure of the lim domain of alpha-actinin-22 associated lim protein
23c2mbvA_
not modelled 27.1 19
PDB header:transcription
Chain: A: PDB Molecule:fusion protein of lim domain transcription factor lmo4 (77-
PDBTitle: lmo4-lim2 in complex with deaf1 (404-418)
24c5us5B_
not modelled 27.1 17
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
25c1nypA_
not modelled 27.0 21
PDB header:cell adhesion
Chain: A: PDB Molecule:pinch protein;
PDBTitle: 4th lim domain of pinch protein
26c2darA_
not modelled 26.7 25
PDB header:metal binding protein
Chain: A: PDB Molecule:pdz and lim domain protein 5;
PDBTitle: solution structure of first lim domain of enigma-like pdz2 and lim domains protein
27c5w54A_
not modelled 26.0 42
PDB header:cytokine
Chain: A: PDB Molecule:stress response peptide-2;
PDBTitle: cytokine-like stress response peptide-2 in manduca sexta
28c2curA_
not modelled 25.7 25
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 1;
PDBTitle: solution structure of skeletal muscle lim-protein 1
29c2eheA_
not modelled 25.6 29
PDB header:structural protein
Chain: A: PDB Molecule:four and a half lim domains 3;
PDBTitle: solution structure of the first lim domain from human four2 and a half lim domains protein 3
30c2p57A_
not modelled 25.3 26
PDB header:metal binding protein
Chain: A: PDB Molecule:gtpase-activating protein znf289;
PDBTitle: gap domain of znf289, an id1-regulated zinc finger protein
31d1o26a_
not modelled 25.3 37
Fold:Thymidylate synthase-complementing protein Thy1
Superfamily:Thymidylate synthase-complementing protein Thy1
Family:Thymidylate synthase-complementing protein Thy1
32d1nuia2
not modelled 25.3 29
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
33d1mhxa_
not modelled 25.1 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
34d1wgla_
not modelled 24.9 26
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
35c2gviA_
not modelled 24.7 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a putative formylmethanofuran dehydrogenase2 subunit e (ta1109) from thermoplasma acidophilum at 1.87 a resolution
36d2a1ja1
not modelled 24.6 12
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
37d1mi0a_
not modelled 24.4 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
38c2cuqA_
not modelled 24.3 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:four and a half lim domains 3;
PDBTitle: solution structure of second lim domain from human skeletal2 muscle lim-protein 2
39c6j61B_
not modelled 24.1 53
PDB header:transferase
Chain: B: PDB Molecule:flavin-dependent thymidylate synthase;
PDBTitle: crystal structure of thymidylate synthase, thy1, from thermus2 thermophilus having an extra c terminal domain
40d1fd6a_
not modelled 24.0 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
41c3dwdB_
not modelled 24.0 22
PDB header:transport protein
Chain: B: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1;
PDBTitle: crystal structure of the arfgap domain of human arfgap1
42c1x6aA_
not modelled 24.0 25
PDB header:protein binding
Chain: A: PDB Molecule:lim domain kinase 2;
PDBTitle: solution structures of the second lim domain of human lim-2 kinase 2 (limk2)
43c2dhyA_
not modelled 23.9 24
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
44d1gb4a_
not modelled 23.7 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
45c1x4lA_
not modelled 23.0 33
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in four and a half lim2 domains protein 2
46c3jueA_
not modelled 22.9 20
PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
47d1pgaa_
not modelled 22.8 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
48d1pgxa_
not modelled 22.6 28
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
49c2d9lA_
not modelled 22.6 19
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoporin-like protein rip;
PDBTitle: solution structure of the arfgap domain of human rip
50d1p7ea_
not modelled 22.6 28
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
51c2d8xA_
not modelled 22.5 21
PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:protein pinch;
PDBTitle: solution structure of the second lim domain of particularly2 interesting new cys-his protein (pinch)
52d1em7a_
not modelled 22.4 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
53c2kngA_
not modelled 22.0 53
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: solution structure of c-domain of lsr2
54d1qkza_
not modelled 21.5 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
55c1rutX_
not modelled 21.1 19
PDB header:protein binding
Chain: X: PDB Molecule:fusion protein of lmo4 protein and lim domain-binding
PDBTitle: complex of lmo4 lim domains 1 and 2 with the ldb1 lid domain
56c2gajA_
not modelled 20.6 19
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase i;
PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form
57c3f6qB_
not modelled 20.4 21
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:lim and senescent cell antigen-like-containing
PDBTitle: crystal structure of integrin-linked kinase ankyrin repeat2 domain in complex with pinch1 lim1 domain
58d1fcla_
not modelled 20.2 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
59c1x3hA_
not modelled 19.9 29
PDB header:metal binding protein
Chain: A: PDB Molecule:leupaxin;
PDBTitle: solution structure of the lim domain of human leupaxin
60c4qglA_
not modelled 19.8 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:acireductone dioxygenase;
PDBTitle: acireductone dioxygenase from bacillus anthracis with three cadmium2 ions
61c3t9kA_
not modelled 19.7 20
PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
62c6gvwF_
not modelled 19.5 20
PDB header:signaling protein
Chain: F: PDB Molecule:brca1-a complex subunit abraxas 1;
PDBTitle: crystal structure of the brca1-a complex
63c2l3kA_
not modelled 19.4 29
PDB header:oncoprotein
Chain: A: PDB Molecule:rhombotin-2, linker, lim domain-binding protein 1;
PDBTitle: solution structure of lmo2(lim2)-ldb1(lid)
64c3k7aM_
not modelled 19.1 17
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
65c2co8A_
not modelled 19.1 23
PDB header:metal binding protein
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains
66c2crrA_
not modelled 18.9 28
PDB header:protein transport
Chain: A: PDB Molecule:stromal membrane-associated protein smap1b;
PDBTitle: solution structure of arfgap domain from human smap1
67c2xjyA_
not modelled 18.9 29
PDB header:oncoprotein
Chain: A: PDB Molecule:rhombotin-2;
PDBTitle: crystal structure of the lmo2:ldb1-lid complex, p21 crystal2 form
68c2jtnA_
not modelled 18.8 21
PDB header:protein binding/transcription
Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox
PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex
69c1x63A_
not modelled 18.8 21
PDB header:contractile protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 1;
PDBTitle: solution structure of the second lim domain of skeletal2 muscle lim protein 1
70c2ypdB_
not modelled 18.7 50
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable jmjc domain-containing histone demethylation prot
PDBTitle: crystal structure of the jumonji domain of human jumonji domain2 containing 1c protein
71c2crwA_
not modelled 18.4 26
PDB header:signaling protein
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating
PDBTitle: solution structure of the arfgap domain of adp-ribosylation2 factor gtpaseactivating protein 3 (arfgap 3)
72c1x61A_
not modelled 17.8 21
PDB header:cell adhesion
Chain: A: PDB Molecule:thyroid receptor interacting protein 6;
PDBTitle: solution structure of the first lim domain of thyroid2 receptor interacting protein 6 (trip6)
73c2naaA_
not modelled 17.7 28
PDB header:transcription
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-36 and h4
PDBTitle: nsd1-phd_5-c5hch tandem domain structure
74c2d8zA_
not modelled 17.5 33
PDB header:signaling protein, structural protein
Chain: A: PDB Molecule:four and a half lim domains 2;
PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2)
75c2k8dA_
not modelled 17.0 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
76c1wyhA_
not modelled 16.8 17
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 2;
PDBTitle: solution structure of the lim domain from human skeletal2 muscle lim-protein 2
77d1mvka_
not modelled 16.8 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
78c2jwuA_
not modelled 16.6 11
PDB header:de novo protein
Chain: A: PDB Molecule:gb88;
PDBTitle: solution nmr structures of two designed proteins with 88%2 sequence identity but different fold and function
79c5ldeB_
not modelled 16.6 19
PDB header:viral protein
Chain: B: PDB Molecule:immunoglobulin g-binding protein g,viral flice protein;
PDBTitle: crystal structure of a vflip-ikkgamma stapled peptide dimer
80c1ibiA_
not modelled 16.4 25
PDB header:metal binding protein
Chain: A: PDB Molecule:cysteine-rich protein 2;
PDBTitle: quail cysteine and glycine-rich protein, nmr, 15 minimized2 model structures
81d1x3ha2
not modelled 16.3 35
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
82c1zxhA_
not modelled 16.1 22
PDB header:immune system/protein binding
Chain: A: PDB Molecule:immunoglobulin g binding protein g;
PDBTitle: g311 mutant protein
83c2wryA_
not modelled 16.1 14
PDB header:immune system
Chain: A: PDB Molecule:interleukin-1beta;
PDBTitle: crystal structure of chicken cytokine interleukin 1 beta
84c2l6yB_
not modelled 15.6 29
PDB header:transcription regulation/oncoprotein
Chain: B: PDB Molecule:lim domain only 2, linker, lim domain-binding protein 1;
PDBTitle: haddock model of gata1nf:lmo2lim2-ldb1lid
85c1nltA_
not modelled 15.1 32
PDB header:protein transport
Chain: A: PDB Molecule:mitochondrial protein import protein mas5;
PDBTitle: the crystal structure of hsp40 ydj1
86c4p5aB_
not modelled 14.9 29
PDB header:transferase
Chain: B: PDB Molecule:thymidylate synthase thyx;
PDBTitle: crystal structure of a ump/dump methylase polb from streptomyces2 cacaoi bound with 5-br ump
87d1yrnb_
not modelled 14.8 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
88d1du6a_
not modelled 14.7 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
89c2egqA_
not modelled 14.6 24
PDB header:structural protein
Chain: A: PDB Molecule:fhl1 protein;
PDBTitle: solution structure of the fourth lim domain from human four2 and a half lim domains 1
90c6f42V_
not modelled 14.4 26
PDB header:transcription
Chain: V: PDB Molecule:transcription factor iiib 70 kda subunit;
PDBTitle: rna polymerase iii closed complex cc1.
91c2yrgA_
not modelled 14.3 23
PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
92c1bg1A_
not modelled 14.1 18
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
93d1zrra1
not modelled 14.1 17
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
94c3wofB_
not modelled 14.1 47
PDB header:transferase/transcription
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of p23-45 gp39 (6-132) bound to thermus thermophilus2 rna polymerase beta-flap domain
95c6h9dB_
not modelled 13.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme;
PDBTitle: muramidase domain of spmx from asticaccaulis excentricus
96c1x4kA_
not modelled 13.8 21
PDB header:metal binding protein
Chain: A: PDB Molecule:skeletal muscle lim-protein 3;
PDBTitle: solution structure of lim domain in lim-protein 3
97c5vgjG_
not modelled 13.6 18
PDB header:viral protein/immune system
Chain: G: PDB Molecule:1fd6-v1v2-wito;
PDBTitle: crystal structure of the human fab vrc38.01, an hiv-1 v1v2-directed2 neutralizing antibody isolated from donor n90, bound to a scaffolded3 wito v1v2 domain
98c5fz5M_
not modelled 13.4 17
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
99c4v1oM_
not modelled 13.4 17
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex

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