Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2805_(-)_3112877_3113281
DateWed Aug 7 12:50:46 BST 2019
Unique Job ID259d0780624087a1
SequenceMGRGNGKILD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.074 Y:32.542 Z:32.754
Model (left) based on template c1u78A_
Top template information
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
Confidence and coverage
Confidence: 89.0% Coverage: 57%
76 residues ( 57% of your sequence) have been modelled with 89.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1u78A_



89.0 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
2d1v92a_



88.7 33
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
3d2hzab1



66.1 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
4c6dk4A_



65.4 9
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni peroxide stress regulator
5d2hzaa1



64.5 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
6c3hosA_



64.4 13
PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
7c2bj3D_



63.3 32
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
8d2bj7a1



62.9 32
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
9c1q5vB_



62.1 32
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
10d1oaia_



60.2 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
11d1mkma1



52.2 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator IclR, N-terminal domain
12c3bq3A_



52.0 16
PDB header:cell cycle, ligase
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: crystal structure of s. cerevisiae dcn1
13c2jp7A_



50.3 8
PDB header:translation
Chain: A: PDB Molecule:mrna export factor mex67;
PDBTitle: nmr structure of the mex67 uba domain
14d1lvaa4



49.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
15c6exzA_



48.9 8
PDB header:transport protein
Chain: A: PDB Molecule:mrna export factor mex67;
PDBTitle: crystal structure of mex67 c-term
16c2zhhA_



48.8 11
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
17d1ifya_



47.2 19
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
18c5tjjA_



47.0 17
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
19d1go5a_



47.0 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
20c5k7lA_



46.2 25
PDB header:metal transport/calcium binding protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 1;
PDBTitle: single particle cryo-em structure of the voltage-gated k+ channel eag12 bound to the channel inhibitor calmodulin
21c2ca9B_



not modelled 43.6 19
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
22c2l4fA_



not modelled 39.6 13
PDB header:protein binding
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: nmr structure of the uba domain of s. cerevisiae dcn1 bound to2 ubiquitin
23c2k9mA_



not modelled 39.2 13
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
24c2dzlA_



not modelled 39.0 22
PDB header:structural genomics unknown function
Chain: A: PDB Molecule:protein fam100b;
PDBTitle: solution structure of the uba domain in human protein2 fam100b
25c5ui5I_



not modelled 38.4 13
PDB header:transcription/dna
Chain: I: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: crystal structure of aquifex aeolicus sigman bound to promoter dna
26c4wp2D_



not modelled 38.0 17
PDB header:transport protein
Chain: D: PDB Molecule:putative mrna export protein;
PDBTitle: chaetomium mex67 uba domain
27c1wsuA_



not modelled 37.5 21
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
28c2pjpA_



not modelled 37.2 32
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
29d2hh6a1



not modelled 34.9 15
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
30c2xroE_



not modelled 34.2 10
PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
31c6opfA_



not modelled 33.4 13
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear rna export factor 2, panoramix fusion;
PDBTitle: crystal structure of dmnxf2 uba domain fused with panoramix helix
32c5fg0B_



not modelled 32.2 12
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase listerin;
PDBTitle: structure of the conserved yeast listerin (ltn1) n-terminal domain,2 monoclinic form
33c5byhM_



not modelled 31.9 13
PDB header:transferase
Chain: M: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
34c2plyB_



not modelled 31.3 21
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
35c5whmB_



not modelled 31.2 15
PDB header:transcription
Chain: B: PDB Molecule:iclr family transcriptional regulator;
PDBTitle: crystal structure of iclr family transcriptional regulator from2 brucella abortus
36c6fkgC_



not modelled 30.9 18
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
37d1i5za1



not modelled 29.8 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
38d2o3la1



not modelled 29.5 13
Fold:Left-handed superhelix
Superfamily:BH3980-like
Family:BH3980-like
39c5y6iB_



not modelled 29.0 16
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
40c1lvaA_



not modelled 28.8 21
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
41c1z4hA_



not modelled 28.7 17
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
42c2dalA_



not modelled 28.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein kiaa0794;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein
43d2oz6a1



not modelled 27.9 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
44c5nwtM_



not modelled 27.6 13
PDB header:transferase
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
45c3eyyA_



not modelled 27.6 12
PDB header:transport
Chain: A: PDB Molecule:putative iron uptake regulatory protein;
PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition
46c5jpqG_



not modelled 26.9 11
PDB header:ribosome
Chain: G: PDB Molecule:utp10;
PDBTitle: cryo-em structure of the 90s pre-ribosome
47c6gh5M_



not modelled 25.6 13
PDB header:transcription
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme2 transcription open complex
48d1oqya1



not modelled 24.6 18
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
49d2bgca1



not modelled 23.0 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
50d1kcfa1



not modelled 22.7 29
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
51c2mroB_



not modelled 22.7 16
PDB header:transport protein/signaling protein
Chain: B: PDB Molecule:dna damage-inducible protein 1;
PDBTitle: structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
52d1k78a1



not modelled 22.2 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
53c2cwoD_



not modelled 21.9 29
PDB header:rna binding protein
Chain: D: PDB Molecule:rna silencing suppressor;
PDBTitle: crystal structure of rna silencing suppressor p21 from beet yellows2 virus
54c4xfeA_



not modelled 21.8 12
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter subunit dctp;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 pseudomonas putida f1 (pput_1203), target efi-500184, with bound d-3 glucuronate
55d2gaua1



not modelled 21.7 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
56d1veka_



not modelled 21.4 15
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
57d2coha1



not modelled 21.4 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:CAP C-terminal domain-like
58d2g3qa1



not modelled 21.3 14
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
59c3mwmA_



not modelled 21.0 12
PDB header:transcription
Chain: A: PDB Molecule:putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
60c2mx7A_



not modelled 20.9 34
PDB header:protein binding
Chain: A: PDB Molecule:synergin gamma;
PDBTitle: solution structure of the internal eh domain of gamma-synergin
61c4razB_



not modelled 20.6 14
PDB header:metal binding protein
Chain: B: PDB Molecule:dna-binding transcriptional dual regulator of siderophore
PDBTitle: crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur
62c4mtdA_



not modelled 19.5 15
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:zinc uptake regulation protein;
PDBTitle: zinc uptake regulator complexed with zinc and dna
63d6paxa1



not modelled 19.3 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
64c2vz4A_



not modelled 19.2 17
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
65d1r8da_



not modelled 17.1 20
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
66d1adra_



not modelled 17.1 9
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
67c5cukA_



not modelled 16.9 19
PDB header:cell invasion
Chain: A: PDB Molecule:ruler protein;
PDBTitle: crystal structure of the pscp ss domain
68d1z05a1



not modelled 16.7 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
69c1stzB_



not modelled 16.7 20
PDB header:transcription
Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
70c2o0yB_



not modelled 16.1 11
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
71d1sd4a_



not modelled 15.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Penicillinase repressor
72d1szpa1



not modelled 15.4 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
73c6paxA_



not modelled 15.0 12
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
74d1q06a_



not modelled 14.7 15
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
75d1mzba_



not modelled 14.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FUR-like
76c1bdhA_



not modelled 14.4 13
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
77d1szpb1



not modelled 14.4 20
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
78c4r24B_



not modelled 14.1 19
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
79c3gp4B_



not modelled 14.0 15
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
80d3e46a1



not modelled 13.9 19
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
81c2ev5B_



not modelled 13.9 11
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
82c2fu4B_



not modelled 13.9 12
PDB header:dna binding protein
Chain: B: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator)
83d1j9ia_



not modelled 13.5 13
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Terminase gpNU1 subunit domain
84c2crnA_



not modelled 13.5 37
PDB header:immune system
Chain: A: PDB Molecule:ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
85d2obpa1



not modelled 13.4 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ReutB4095-like
86d1z6ra1



not modelled 13.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ROK associated domain
87d1z7ua1



not modelled 13.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
88c5fd6A_



not modelled 13.2 12
PDB header:transcription
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: zinc-bound manganese uptake regulator
89c3t76A_



not modelled 13.1 8
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
90d2ofya1



not modelled 13.0 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
91d1uxda_



not modelled 12.9 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:GalR/LacI-like bacterial regulator
92c4pe3A_



not modelled 12.5 11
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter-dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open3 structure
93c2xcjB_



not modelled 12.3 16
PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
94d1h7ca_



not modelled 12.1 16
Fold:Spectrin repeat-like
Superfamily:Tubulin chaperone cofactor A
Family:Tubulin chaperone cofactor A
95c2w57A_



not modelled 12.0 12
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains
96c5ecjA_



not modelled 11.8 17
PDB header:gene regulation/transcription
Chain: A: PDB Molecule:pr domain zinc finger protein 14,protein cbfa2t2;
PDBTitle: crystal structure of monobody mb(s4) bound to prdm14 in complex with2 mtgr1
97c4i7hA_



not modelled 11.7 6
PDB header:transcription
Chain: A: PDB Molecule:peroxide stress sensing regulator;
PDBTitle: structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
98c4go1A_



not modelled 11.6 9
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
99c5fmfR_



not modelled 11.6 17
PDB header:transcription
Chain: R: PDB Molecule:transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex

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