1 c1u78A_
89.0
14
PDB header: dna binding protein/dnaChain: A: PDB Molecule: transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
2 d1v92a_
88.7
33
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: TAP-C domain-like
3 d2hzab1
66.1
32
Fold: Ribbon-helix-helixSuperfamily: Ribbon-helix-helixFamily: CopG-like
4 c6dk4A_
65.4
9
PDB header: metal transportChain: A: PDB Molecule: ferric uptake regulation protein;
PDBTitle: crystal structure of campylobacter jejuni peroxide stress regulator
5 d2hzaa1
64.5
32
Fold: Ribbon-helix-helixSuperfamily: Ribbon-helix-helixFamily: CopG-like
6 c3hosA_
64.4
13
PDB header: transferase, dna binding protein/dnaChain: A: PDB Molecule: transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
7 c2bj3D_
63.3
32
PDB header: transcriptionChain: D: PDB Molecule: nickel responsive regulator;
PDBTitle: nikr-apo
8 d2bj7a1
62.9
32
Fold: Ribbon-helix-helixSuperfamily: Ribbon-helix-helixFamily: CopG-like
9 c1q5vB_
62.1
32
PDB header: transcriptionChain: B: PDB Molecule: nickel responsive regulator;
PDBTitle: apo-nikr
10 d1oaia_
60.2
17
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: TAP-C domain-like
11 d1mkma1
52.2
20
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: Transcriptional regulator IclR, N-terminal domain
12 c3bq3A_
52.0
16
PDB header: cell cycle, ligaseChain: A: PDB Molecule: defective in cullin neddylation protein 1;
PDBTitle: crystal structure of s. cerevisiae dcn1
13 c2jp7A_
50.3
8
PDB header: translationChain: A: PDB Molecule: mrna export factor mex67;
PDBTitle: nmr structure of the mex67 uba domain
14 d1lvaa4
49.7
21
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: C-terminal fragment of elongation factor SelB
15 c6exzA_
48.9
8
PDB header: transport proteinChain: A: PDB Molecule: mrna export factor mex67;
PDBTitle: crystal structure of mex67 c-term
16 c2zhhA_
48.8
11
PDB header: transcriptionChain: A: PDB Molecule: redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
17 d1ifya_
47.2
19
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: UBA domain
18 c5tjjA_
47.0
17
PDB header: transcriptionChain: A: PDB Molecule: transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
19 d1go5a_
47.0
17
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: TAP-C domain-like
20 c5k7lA_
46.2
25
PDB header: metal transport/calcium binding proteinChain: A: PDB Molecule: potassium voltage-gated channel subfamily h member 1;
PDBTitle: single particle cryo-em structure of the voltage-gated k+ channel eag12 bound to the channel inhibitor calmodulin
21 c2ca9B_
not modelled
43.6
19
PDB header: transcriptionChain: B: PDB Molecule: putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
22 c2l4fA_
not modelled
39.6
13
PDB header: protein bindingChain: A: PDB Molecule: defective in cullin neddylation protein 1;
PDBTitle: nmr structure of the uba domain of s. cerevisiae dcn1 bound to2 ubiquitin
23 c2k9mA_
not modelled
39.2
13
PDB header: transcriptionChain: A: PDB Molecule: rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
24 c2dzlA_
not modelled
39.0
22
PDB header: structural genomics unknown functionChain: A: PDB Molecule: protein fam100b;
PDBTitle: solution structure of the uba domain in human protein2 fam100b
25 c5ui5I_
not modelled
38.4
13
PDB header: transcription/dnaChain: I: PDB Molecule: rna polymerase sigma factor rpon;
PDBTitle: crystal structure of aquifex aeolicus sigman bound to promoter dna
26 c4wp2D_
not modelled
38.0
17
PDB header: transport proteinChain: D: PDB Molecule: putative mrna export protein;
PDBTitle: chaetomium mex67 uba domain
27 c1wsuA_
not modelled
37.5
21
PDB header: translation/rnaChain: A: PDB Molecule: selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
28 c2pjpA_
not modelled
37.2
32
PDB header: translation/rnaChain: A: PDB Molecule: selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna-binding domain of elongation factor2 selb from e.coli in complex with secis rna
29 d2hh6a1
not modelled
34.9
15
Fold: Left-handed superhelixSuperfamily: BH3980-likeFamily: BH3980-like
30 c2xroE_
not modelled
34.2
10
PDB header: dna-binding protein/dnaChain: E: PDB Molecule: hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
31 c6opfA_
not modelled
33.4
13
PDB header: rna binding proteinChain: A: PDB Molecule: nuclear rna export factor 2, panoramix fusion;
PDBTitle: crystal structure of dmnxf2 uba domain fused with panoramix helix
32 c5fg0B_
not modelled
32.2
12
PDB header: ligaseChain: B: PDB Molecule: e3 ubiquitin-protein ligase listerin;
PDBTitle: structure of the conserved yeast listerin (ltn1) n-terminal domain,2 monoclinic form
33 c5byhM_
not modelled
31.9
13
PDB header: transferaseChain: M: PDB Molecule: rna polymerase sigma-54 factor;
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
34 c2plyB_
not modelled
31.3
21
PDB header: translation/rnaChain: B: PDB Molecule: selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
35 c5whmB_
not modelled
31.2
15
PDB header: transcriptionChain: B: PDB Molecule: iclr family transcriptional regulator;
PDBTitle: crystal structure of iclr family transcriptional regulator from2 brucella abortus
36 c6fkgC_
not modelled
30.9
18
PDB header: toxinChain: C: PDB Molecule: rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
37 d1i5za1
not modelled
29.8
10
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CAP C-terminal domain-like
38 d2o3la1
not modelled
29.5
13
Fold: Left-handed superhelixSuperfamily: BH3980-likeFamily: BH3980-like
39 c5y6iB_
not modelled
29.0
16
PDB header: transcriptionChain: B: PDB Molecule: transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
40 c1lvaA_
not modelled
28.8
21
PDB header: translationChain: A: PDB Molecule: selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
41 c1z4hA_
not modelled
28.7
17
PDB header: protein binding, dna binding proteinChain: A: PDB Molecule: tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
42 c2dalA_
not modelled
28.0
25
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: protein kiaa0794;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein
43 d2oz6a1
not modelled
27.9
8
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CAP C-terminal domain-like
44 c5nwtM_
not modelled
27.6
13
PDB header: transferaseChain: M: PDB Molecule: rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
45 c3eyyA_
not modelled
27.6
12
PDB header: transportChain: A: PDB Molecule: putative iron uptake regulatory protein;
PDBTitle: structural basis for the specialization of nur, a nickel-2 specific fur homologue, in metal sensing and dna3 recognition
46 c5jpqG_
not modelled
26.9
11
PDB header: ribosomeChain: G: PDB Molecule: utp10;
PDBTitle: cryo-em structure of the 90s pre-ribosome
47 c6gh5M_
not modelled
25.6
13
PDB header: transcriptionChain: M: PDB Molecule: rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme2 transcription open complex
48 d1oqya1
not modelled
24.6
18
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: UBA domain
49 d2bgca1
not modelled
23.0
6
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CAP C-terminal domain-like
50 d1kcfa1
not modelled
22.7
29
Fold: LEM/SAP HeH motifSuperfamily: SAP domainFamily: SAP domain
51 c2mroB_
not modelled
22.7
16
PDB header: transport protein/signaling proteinChain: B: PDB Molecule: dna damage-inducible protein 1;
PDBTitle: structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
52 d1k78a1
not modelled
22.2
9
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Paired domain
53 c2cwoD_
not modelled
21.9
29
PDB header: rna binding proteinChain: D: PDB Molecule: rna silencing suppressor;
PDBTitle: crystal structure of rna silencing suppressor p21 from beet yellows2 virus
54 c4xfeA_
not modelled
21.8
12
PDB header: transport proteinChain: A: PDB Molecule: trap dicarboxylate transporter subunit dctp;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 pseudomonas putida f1 (pput_1203), target efi-500184, with bound d-3 glucuronate
55 d2gaua1
not modelled
21.7
12
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CAP C-terminal domain-like
56 d1veka_
not modelled
21.4
15
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: UBA domain
57 d2coha1
not modelled
21.4
8
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CAP C-terminal domain-like
58 d2g3qa1
not modelled
21.3
14
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: UBA domain
59 c3mwmA_
not modelled
21.0
12
PDB header: transcriptionChain: A: PDB Molecule: putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
60 c2mx7A_
not modelled
20.9
34
PDB header: protein bindingChain: A: PDB Molecule: synergin gamma;
PDBTitle: solution structure of the internal eh domain of gamma-synergin
61 c4razB_
not modelled
20.6
14
PDB header: metal binding proteinChain: B: PDB Molecule: dna-binding transcriptional dual regulator of siderophore
PDBTitle: crystal structure of magnetospirillum gryphiswaldense msr-1 holo-fur
62 c4mtdA_
not modelled
19.5
15
PDB header: dna binding protein/dnaChain: A: PDB Molecule: zinc uptake regulation protein;
PDBTitle: zinc uptake regulator complexed with zinc and dna
63 d6paxa1
not modelled
19.3
6
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Paired domain
64 c2vz4A_
not modelled
19.2
17
PDB header: transcriptionChain: A: PDB Molecule: hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
65 d1r8da_
not modelled
17.1
20
Fold: Putative DNA-binding domainSuperfamily: Putative DNA-binding domainFamily: DNA-binding N-terminal domain of transcription activators
66 d1adra_
not modelled
17.1
9
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: Phage repressors
67 c5cukA_
not modelled
16.9
19
PDB header: cell invasionChain: A: PDB Molecule: ruler protein;
PDBTitle: crystal structure of the pscp ss domain
68 d1z05a1
not modelled
16.7
8
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: ROK associated domain
69 c1stzB_
not modelled
16.7
20
PDB header: transcriptionChain: B: PDB Molecule: heat-inducible transcription repressor hrca homolog;
PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
70 c2o0yB_
not modelled
16.1
11
PDB header: transcriptionChain: B: PDB Molecule: transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp.
71 d1sd4a_
not modelled
15.9
11
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: Penicillinase repressor
72 d1szpa1
not modelled
15.4
20
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain
73 c6paxA_
not modelled
15.0
12
PDB header: gene regulation/dnaChain: A: PDB Molecule: homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
74 d1q06a_
not modelled
14.7
15
Fold: Putative DNA-binding domainSuperfamily: Putative DNA-binding domainFamily: DNA-binding N-terminal domain of transcription activators
75 d1mzba_
not modelled
14.6
18
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: FUR-like
76 c1bdhA_
not modelled
14.4
13
PDB header: transcription/dnaChain: A: PDB Molecule: protein (purine repressor);
PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex
77 d1szpb1
not modelled
14.4
20
Fold: SAM domain-likeSuperfamily: Rad51 N-terminal domain-likeFamily: DNA repair protein Rad51, N-terminal domain
78 c4r24B_
not modelled
14.1
19
PDB header: transcrption/dnaChain: B: PDB Molecule: hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
79 c3gp4B_
not modelled
14.0
15
PDB header: transcription regulatorChain: B: PDB Molecule: transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
80 d3e46a1
not modelled
13.9
19
Fold: RuvA C-terminal domain-likeSuperfamily: UBA-likeFamily: UBA domain
81 c2ev5B_
not modelled
13.9
11
PDB header: transcriptionChain: B: PDB Molecule: transcriptional regulator mntr;
PDBTitle: bacillus subtilis manganese transport regulator (mntr)2 bound to calcium
82 c2fu4B_
not modelled
13.9
12
PDB header: dna binding proteinChain: B: PDB Molecule: ferric uptake regulation protein;
PDBTitle: crystal structure of the dna binding domain of e.coli fur (ferric2 uptake regulator)
83 d1j9ia_
not modelled
13.5
13
Fold: Putative DNA-binding domainSuperfamily: Putative DNA-binding domainFamily: Terminase gpNU1 subunit domain
84 c2crnA_
not modelled
13.5
37
PDB header: immune systemChain: A: PDB Molecule: ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
85 d2obpa1
not modelled
13.4
5
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: ReutB4095-like
86 d1z6ra1
not modelled
13.3
18
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: ROK associated domain
87 d1z7ua1
not modelled
13.3
16
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: HxlR-like
88 c5fd6A_
not modelled
13.2
12
PDB header: transcriptionChain: A: PDB Molecule: ferric uptake regulation protein;
PDBTitle: zinc-bound manganese uptake regulator
89 c3t76A_
not modelled
13.1
8
PDB header: transcription regulatorChain: A: PDB Molecule: transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
90 d2ofya1
not modelled
13.0
14
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: SinR domain-like
91 d1uxda_
not modelled
12.9
14
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: GalR/LacI-like bacterial regulator
92 c4pe3A_
not modelled
12.5
11
PDB header: solute-binding proteinChain: A: PDB Molecule: trap dicarboxylate transporter-dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3620, target efi-510199), apo open3 structure
93 c2xcjB_
not modelled
12.3
16
PDB header: viral proteinChain: B: PDB Molecule: c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
94 d1h7ca_
not modelled
12.1
16
Fold: Spectrin repeat-likeSuperfamily: Tubulin chaperone cofactor AFamily: Tubulin chaperone cofactor A
95 c2w57A_
not modelled
12.0
12
PDB header: metal transportChain: A: PDB Molecule: ferric uptake regulation protein;
PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains
96 c5ecjA_
not modelled
11.8
17
PDB header: gene regulation/transcriptionChain: A: PDB Molecule: pr domain zinc finger protein 14,protein cbfa2t2;
PDBTitle: crystal structure of monobody mb(s4) bound to prdm14 in complex with2 mtgr1
97 c4i7hA_
not modelled
11.7
6
PDB header: transcriptionChain: A: PDB Molecule: peroxide stress sensing regulator;
PDBTitle: structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
98 c4go1A_
not modelled
11.6
9
PDB header: transcriptionChain: A: PDB Molecule: transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
99 c5fmfR_
not modelled
11.6
17
PDB header: transcriptionChain: R: PDB Molecule: transcription initiation factor iie subunit alpha, tfa1;
PDBTitle: the p-lobe of rna polymerase ii pre-initiation complex