Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2808_(-)_3115056_3115313
DateWed Aug 7 12:50:47 BST 2019
Unique Job IDf8dd0637cae70e31
SequenceVSNVLDAIST ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.868 Y:32.604 Z:26.658
Model (left) based on template d1lq1a_
Top template information
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
Confidence and coverage
Confidence: 58.5% Coverage: 47%
40 residues ( 47% of your sequence) have been modelled with 58.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1lq1a_



58.5 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
2d3e9va1



28.1 20
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
3c5nm7A_



27.7 31
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan-binding domain 1;
PDBTitle: crystal structure of burkholderia ap3 phage endolysin
4c5ecfJ_



26.7 14
PDB header:lipid binding protein
Chain: J: PDB Molecule:cell wall antigen;
PDBTitle: ligand binding domain 1 of penicillium marneffei mp1 protein complexed2 with arachidonic acids
5c2q01A_



25.8 28
PDB header:isomerase
Chain: A: PDB Molecule:uronate isomerase;
PDBTitle: crystal structure of glucuronate isomerase from caulobacter crescentus
6d1fc3a_



25.3 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:Spo0A
7c3w3sA_



19.8 19
PDB header:ligase/rna
Chain: A: PDB Molecule:type-2 serine--trna ligase;
PDBTitle: crystal structure of a. aeolicus trnasec in complex with m. kandleri2 serrs
8d1dvka_



18.8 26
Fold:Functional domain of the splicing factor Prp18
Superfamily:Functional domain of the splicing factor Prp18
Family:Functional domain of the splicing factor Prp18
9c4i6vA_



17.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:amidohydrolase 2;
PDBTitle: the crystal structure of an amidohydrolase 2 from planctomyces2 limnophilus dsm 3776
10c2ky4A_



17.0 43
PDB header:photosynthesis
Chain: A: PDB Molecule:phycobilisome linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome2 linker polypeptide from anabaena sp. northeast structural genomics3 consortium target nsr123e
11c5ietA_



17.0 38
PDB header:gene regulation
Chain: A: PDB Molecule:bacterial proteasome activator;
PDBTitle: crystal structure of mycobacterium tuberculosis atp-independent2 proteasome activator
12c3ohwB_



16.8 38
PDB header:protein binding
Chain: B: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide;
PDBTitle: x-ray structure of phycobilisome lcm core-membrane linker polypeptide2 (fragment 721-860) from synechocystis sp. pcc 6803, northeast3 structural genomics consortium target sgr209e
13c3b0bA_



16.6 21
PDB header:dna binding protein
Chain: A: PDB Molecule:centromere protein s;
PDBTitle: crystal structure of the chicken cenp-s/cenp-x complex
14c3pruD_



16.1 43
PDB header:photosynthesis
Chain: D: PDB Molecule:phycobilisome 32.1 kda linker polypeptide, phycocyanin-
PDBTitle: crystal structure of phycobilisome 32.1 kda linker polypeptide,2 phycocyanin-associated, rod 1 (fragment 14-158) from synechocystis3 sp. pcc 6803, northeast structural genomics consortium target sgr182a
15c6neqi_



15.4 29
PDB header:ribosomal protein
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: structure of human mitochondrial translation initiation factor 3 bound2 to the small ribosomal subunit-class-ii
16c3vh5A_



15.0 21
PDB header:dna binding protein
Chain: A: PDB Molecule:cenp-s;
PDBTitle: crystal structure of the chicken cenp-t histone fold/cenp-w/cenp-2 s/cenp-x heterotetrameric complex, crystal form i
17d1jqna_



14.6 31
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
18d1uerc2



14.3 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
19c2l06A_



13.8 37
PDB header:protein binding
Chain: A: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker polypeptide domain (fragment2 254-400) of phycobilisome linker protein apce from synechocystis sp.3 pcc 6803. northeast structural genomics consortium target sgr209c
20d3deoa1



13.4 63
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
21d1kkca2



not modelled 13.0 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
22d1rqba2



not modelled 12.5 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
23d2p4ka2



not modelled 12.3 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
24d1gyxa_



not modelled 12.2 14
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
25c1ma1E_



not modelled 11.9 20
PDB header:oxidoreductase
Chain: E: PDB Molecule:superoxide dismutase;
PDBTitle: structure and properties of the atypical iron superoxide2 dismutase from methanobacterium thermoautotrophicum
26c5tirB_



not modelled 11.5 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of mn superoxide dismutase mutant m27v from2 trichoderma reesei
27d2ouwa1



not modelled 11.2 18
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
28d1j5sa_



not modelled 11.0 21
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Uronate isomerase-like
29c1ddzA_



not modelled 10.7 30
PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase;
PDBTitle: x-ray structure of a beta-carbonic anhydrase from the red2 alga, porphyridium purpureum r-1
30c2lxeA_



not modelled 10.7 21
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase suvr4;
PDBTitle: s4wyild
31c4br6B_



not modelled 10.6 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of chaetomium thermophilum mnsod
32d1ma1a2



not modelled 10.5 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
33c3dc5C_



not modelled 10.5 30
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase [mn] 2;
PDBTitle: crystal structure of a manganese superoxide dismutases from2 caenorhabditis elegans
34c3hjlA_



not modelled 10.5 24
PDB header:proton transport
Chain: A: PDB Molecule:flagellar motor switch protein flig;
PDBTitle: the structure of full-length flig from aquifex aeolicus
35c1n0nB_



not modelled 10.4 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [mn];
PDBTitle: catalytic and structural effects of amino-acid substitution at his302 in human manganese superoxide dismutase
36d1jr9a2



not modelled 10.1 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
37c4lrtC_



not modelled 9.8 18
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal and solution structures of the bifunctional enzyme2 (aldolase/aldehyde dehydrogenase) from thermomonospora curvata,3 reveal a cofactor-binding domain motion during nad+ and coa4 accommodation whithin the shared cofactor-binding site
38c3ak1C_



not modelled 9.6 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:superoxide dismutase [mn/fe];
PDBTitle: superoxide dismutase from aeropyrum pernix k1, apo-form
39c2l3wA_



not modelled 9.6 37
PDB header:photosynthesis
Chain: A: PDB Molecule:phycobilisome rod linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome rod2 linker polypeptide from synechococcus elongatus, northeast structural3 genomics consortium target snr168a
40c4dh4A_



not modelled 9.5 21
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
41d1nvma2



not modelled 9.4 18
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:HMGL-like
42c1p7gL_



not modelled 9.3 20
PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from pyrobaculum2 aerophilum
43d1unfx2



not modelled 9.0 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
44d1ddza2



not modelled 8.9 29
Fold:Resolvase-like
Superfamily:beta-carbonic anhydrase, cab
Family:beta-carbonic anhydrase, cab
45d1y67a2



not modelled 8.8 35
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
46c6bejA_



not modelled 8.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of manganese superoxide dismutase from xanthomonas2 citri
47d1bsma2



not modelled 8.4 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
48c2kwpA_



not modelled 8.3 12
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: solution structure of the aminoterminal domain of e. coli nusa
49c1kkcB_



not modelled 8.3 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure of aspergillus fumigatus mnsod
50c2mqkA_



not modelled 8.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
51c4ffkA_



not modelled 8.1 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: x-ray structure of iron superoxide dismutase from acidilobus2 saccharovorans
52c1qnnD_



not modelled 7.9 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:superoxide dismutase;
PDBTitle: cambialistic superoxide dismutase from porphyromonas gingivalis
53c3lw9B_



not modelled 7.7 32
PDB header:protein transport
Chain: B: PDB Molecule:invasion protein inva;
PDBTitle: structure of a cytoplasmic domain of salmonella inva
54d2aala1



not modelled 7.7 25
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MSAD-like
55c4h3eB_



not modelled 7.6 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of a putative iron superoxide dismutase from2 trypanosoma cruzi bound to iron
56c2mt4A_



not modelled 7.6 24
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: solution structure of the n-terminal domain of nusa from b. subtilis
57d1dt0a2



not modelled 7.6 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
58c1nvmG_



not modelled 7.6 18
PDB header:lyase/oxidoreductase
Chain: G: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
59c3pl4A_



not modelled 7.6 6
PDB header:motor protein
Chain: A: PDB Molecule:flagellar motor switch protein;
PDBTitle: crystal structure of flig (residue 116-343) from h. pylori
60c1xreB_



not modelled 7.5 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of soda-2 (ba5696) from bacillus2 anthracis at 1.8a resolution.
61c6j9eF_



not modelled 7.5 12
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryo-em structure of xanthomonos oryzae transcription elongation2 complex with nusa and the bacteriophage protein p7
62d1gv3a2



not modelled 7.4 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
63d1idsa2



not modelled 7.4 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
64c3h1sB_



not modelled 7.4 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of superoxide dismutase from francisella tularensis2 subsp. tularensis schu s4
65d1uera2



not modelled 7.3 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
66c1gv3B_



not modelled 7.3 25
PDB header:manganese superoxide dismutase
Chain: B: PDB Molecule:manganese superoxide dismutase;
PDBTitle: the 2.0 angstrom resolution structure of the catalytic portion of a2 cyanobacterial membrane-bound manganese superoxide dismutase
67c5aj3i_



not modelled 7.3 25
PDB header:ribosome
Chain: I: PDB Molecule:mitoribosomal protein us9m, mrps9;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
68c3cvfA_



not modelled 7.2 45
PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
69c4jn6C_



not modelled 7.2 22
PDB header:lyase/oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-2-oxovalerate aldolase;
PDBTitle: crystal structure of the aldolase-dehydrogenase complex from2 mycobacterium tuberculosis hrv37
70c4ds1C_



not modelled 7.2 24
PDB header:structural protein/transport protein
Chain: C: PDB Molecule:dynein light chain 1, cytoplasmic;
PDBTitle: the structure of a yeast dyn2-nup159 complex and the molecular basis2 for the dynein light chain - nuclear pore interaction
71c4c7uB_



not modelled 7.1 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase [mn] 1, mitochondrial;
PDBTitle: crystal structure of manganese superoxide dismutase from arabidopsis2 thaliana
72d1hjra_



not modelled 7.1 13
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:RuvC resolvase
73d1b06a2



not modelled 7.1 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
74c3cveC_



not modelled 7.0 39
PDB header:signaling protein
Chain: C: PDB Molecule:homer protein homolog 1;
PDBTitle: crystal structure of the carboxy terminus of homer1
75d1mnga2



not modelled 6.9 35
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
76d1qxoa_



not modelled 6.9 19
Fold:Chorismate synthase, AroC
Superfamily:Chorismate synthase, AroC
Family:Chorismate synthase, AroC
77c6btcA_



not modelled 6.8 35
PDB header:dna binding protein
Chain: A: PDB Molecule:lp1413 - sccmec type iv-encoded dna binding protein;
PDBTitle: sccmec type iv lp1413 - nucleic acids binding protein
78c1unfX_



not modelled 6.8 25
PDB header:oxidoreductase
Chain: X: PDB Molecule:iron superoxide dismutase;
PDBTitle: the crystal structure of the eukaryotic fesod from vigna2 unguiculata suggests a new enzymatic mechanism
79c3l1nA_



not modelled 6.8 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:cell wall antigen;
PDBTitle: crystal structure of mp1p ligand binding domain 2 complexd with2 palmitic acid
80c3hpxB_



not modelled 6.7 22
PDB header:transferase
Chain: B: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of mycobacterium tuberculosis leua active site2 domain 1-425 (truncation mutant delta:426-644)
81c2k5jB_



not modelled 6.7 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
82c3qvnA_



not modelled 6.6 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:manganese-containing superoxide dismutase;
PDBTitle: crystal structure of cytosolic mnsod3 from candida albicans
83d1lkvx_



not modelled 6.5 27
Fold:alpha-alpha superhelix
Superfamily:FliG
Family:FliG
84c3abfB_



not modelled 6.5 14
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242)
85c1y67D_



not modelled 6.4 35
PDB header:oxidoreductase
Chain: D: PDB Molecule:manganese superoxide dismutase;
PDBTitle: crystal structure of manganese superoxide dismutase from deinococcus2 radiodurans
86c2rcvA_



not modelled 6.4 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [mn];
PDBTitle: crystal structure of the bacillus subtilis superoxide dismutase
87d1wb8a2



not modelled 6.4 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
88c4ecdB_



not modelled 6.2 29
PDB header:lyase
Chain: B: PDB Molecule:chorismate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of bifidobacterium longum2 chorismate synthase
89d2z15a1



not modelled 6.2 20
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
90d1jmxa1



not modelled 6.1 28
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
91d1p7ga2



not modelled 6.1 20
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
92d1my6a2



not modelled 6.1 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
93d3sdpa2



not modelled 6.0 25
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
94c1avmA_



not modelled 5.9 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase;
PDBTitle: the cambialistic superoxide dismutase (fe-sod) of p. shermanii2 coordinated by azide
95c6h9mA_



not modelled 5.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:coiled-coil domain-containing protein 90b, mitochondrial,
PDBTitle: coiled-coil domain-containing protein 90b residues 43-125 from homo2 sapiens fused to a gcn4 adaptor
96c6ms4B_



not modelled 5.8 40
PDB header:translation
Chain: B: PDB Molecule:density-regulated protein;
PDBTitle: crystal structure of the denr-mct-1 complex
97c4f2nL_



not modelled 5.8 25
PDB header:oxidoreductase
Chain: L: PDB Molecule:superoxide dismutase;
PDBTitle: crystal structure of iron superoxide dismutase from leishmania major
98c2kqeA_



not modelled 5.8 27
PDB header:lyase
Chain: A: PDB Molecule:aprataxin and pnk-like factor;
PDBTitle: second pbz domain of human aplf protein in complex with2 ribofuranosyladenosine
99c3b64A_



not modelled 5.7 7
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major

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