Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2809_(-)_3115418_3115729
DateWed Aug 7 12:50:47 BST 2019
Unique Job IDf7b04f9937d342f7
SequenceMTYAARDDTT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.511 Y:24.953 Z:36.317
Model (left) based on template c3thgA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
Confidence and coverage
Confidence: 64.7% Coverage: 31%
32 residues ( 31% of your sequence) have been modelled with 64.7% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3thgA_



64.7 28
PDB header:protein binding
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase activase 1,
PDBTitle: crystal structure of the creosote rubisco activase c-domain
2d1v54e_



28.7 43
Fold:alpha-alpha superhelix
Superfamily:Cytochrome c oxidase subunit E
Family:Cytochrome c oxidase subunit E
3c2y69R_



27.7 43
PDB header:electron transport
Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
4c5uz9B_



25.2 25
PDB header:immune system/rna
Chain: B: PDB Molecule:crispr-associated protein csy2;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
5d2dkya1



23.9 47
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
6c5ji4A_



18.7 44
PDB header:de novo protein
Chain: A: PDB Molecule:w37;
PDBTitle: solution structure of the de novo mini protein geehe_02
7d2cs3a1



18.1 83
Fold:RING/U-box
Superfamily:RING/U-box
Family:Variant RING domain
8d2h80a1



17.1 50
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
9c6hu9r_



16.2 24
PDB header:oxidoreductase/electron transport
Chain: R: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
10d1izma_



12.8 25
Fold:YgfB-like
Superfamily:YgfB-like
Family:YgfB-like
11c4n71A_



12.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:predicted hd phosphohydrolase phnz;
PDBTitle: x-ray crystal structure of 2-amino-1-hydroxyethylphosphonate-bound2 phnz
12c5o7yA_



11.2 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:thebaine 6-o-demethylase;
PDBTitle: thebaine 6-o-demethylase (t6odm) from papaver somniferum in complex2 with succinate
13d1gtma2



9.9 26
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
14d2i5ua1



9.2 6
Fold:DnaD domain-like
Superfamily:DnaD domain-like
Family:DnaD domain
15c4gytB_



8.9 57
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of lpg0076 protein from legionella pneumophila
16d1bgva2



8.5 42
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
17c5xyiU_



8.3 25
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein s10p/s20e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
18d1u2ca2



8.3 23
Fold:Dystroglycan, domain 2
Superfamily:Dystroglycan, domain 2
Family:Dystroglycan, domain 2
19d1bvua2



8.0 23
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
20d1euza2



7.7 29
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
21c2tmgD_



not modelled 7.4 35
PDB header:oxidoreductase
Chain: D: PDB Molecule:protein (glutamate dehydrogenase);
PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e
22c5k12F_



not modelled 7.3 42
PDB header:oxidoreductase
Chain: F: PDB Molecule:glutamate dehydrogenase 1, mitochondrial;
PDBTitle: cryo-em structure of glutamate dehydrogenase at 1.8 a resolution
23c4kwyB_



not modelled 7.1 24
PDB header:transport protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (cc_3750) from caulobacter2 crescentus cb15 at 2.40 a resolution
24c5xcqB_



not modelled 7.1 31
PDB header:immune system
Chain: B: PDB Molecule:vl-sarah(m24c) chimera;
PDBTitle: crystal structure of p20.1 fv-clasp fragment with its antigen peptide
25c3aoeC_



not modelled 7.0 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of hetero-hexameric glutamate dehydrogenase from2 thermus thermophilus (leu bound form)
26c3aogA_



not modelled 6.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase (gdhb) from thermus2 thermophilus (glu bound form)
27c2kfeA_



not modelled 6.4 54
PDB header:antimicrobial protein
Chain: A: PDB Molecule:meucin-24;
PDBTitle: solution structure of meucin-24
28c3nohA_



not modelled 6.3 56
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
29c2uwjF_



not modelled 6.2 56
PDB header:chaperone
Chain: F: PDB Molecule:type iii export protein pscf;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
30d1gp6a_



not modelled 6.1 24
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Penicillin synthase-like
31c3bjvA_



not modelled 6.1 19
PDB header:transferase
Chain: A: PDB Molecule:rmpa;
PDBTitle: the crystal structure of a putative pts iia(ptxa) from streptococcus2 mutans
32d1g99a1



not modelled 6.0 37
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
33d1c0ma1



not modelled 5.9 40
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
34d1hwxa2



not modelled 5.8 42
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
35c2bmaA_



not modelled 5.7 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase (nadp+);
PDBTitle: the crystal structure of plasmodium falciparum glutamate2 dehydrogenase, a putative target for novel antimalarial3 drugs
36d1poaa_



not modelled 5.6 45
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
37c6gdjA_



not modelled 5.6 50
PDB header:structural protein
Chain: A: PDB Molecule:mto2;
PDBTitle: crystal structure of mto2 twin-cysteine dimerisation domain
38c2rt6A_



not modelled 5.5 21
PDB header:dna binding protein
Chain: A: PDB Molecule:primosomal replication protein n'';
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for pric n-2 terminal domain
39c3r2cJ_



not modelled 5.5 55
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
40d2dmda1



not modelled 5.4 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41d1g4ia_



not modelled 5.3 45
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
42d1dpya_



not modelled 5.3 45
Fold:Phospholipase A2, PLA2
Superfamily:Phospholipase A2, PLA2
Family:Vertebrate phospholipase A2
43d1gyza_



not modelled 5.3 57
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
44c4xgiA_



not modelled 5.2 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from burkholderia2 thailandensis
45c3iz6J_



not modelled 5.2 24
PDB header:ribosome
Chain: J: PDB Molecule:40s ribosomal protein s20 (s10p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Binding site prediction 

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