Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2811_(-)_3116149_3116757
DateWed Aug 7 12:50:47 BST 2019
Unique Job ID0b22dfc69f58dbe1
SequenceVVTVEADVDQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.758 Y:42.893 Z:23.255
Model (left) based on template d2jn6a1
Top template information
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
Confidence and coverage
Confidence: 93.2% Coverage: 22%
45 residues ( 22% of your sequence) have been modelled with 93.2% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
96 residues ( 48%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2jn6a1
93.2 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
2c3gn5B_
92.9 10
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
3d2coba1
90.6 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
4d1pdnc_
86.1 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
5c2nb9A_
83.5 25
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
6c6paxA_
83.5 11
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
7d2fiya1
82.5 26
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
8c2rn7A_
81.9 20
PDB header:unknown function
Chain: A: PDB Molecule:is629 orfa;
PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125
9c1u78A_
81.5 16
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
10c3eswA_
80.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine
PDBTitle: complex of yeast pngase with glcnac2-iac.
11c3glsC_
79.4 23
PDB header:hydrolase
Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3,
PDBTitle: crystal structure of human sirt3
12d1x3za1
78.6 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
13d1j8fa_
77.7 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
14c1hlvA_
77.5 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
15c3hefB_
77.2 10
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
16d1k78a1
76.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
17c2gb5B_
75.9 23
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
18c5ol0B_
75.5 27
PDB header:hydrolase
Chain: B: PDB Molecule:putative silent information regulator 2,putative silent
PDBTitle: structure of leishmania infantum silent information regulator 22 related protein 1 (lisir2rp1) in complex with acetylated p53 peptide
19c5xonU_
75.3 16
PDB header:transcription/rna
Chain: U: PDB Molecule:general transcription elongation factor tfiis;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
20d1yc5a1
74.8 19
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
21d1bw6a_
not modelled 73.5 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
22c3ndjA_
not modelled 71.7 23
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
23c3cngC_
not modelled 70.1 32
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
24d6paxa1
not modelled 69.0 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
25c2cg4B_
not modelled 68.9 19
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
26c2p6tH_
not modelled 68.7 14
PDB header:transcription
Chain: H: PDB Molecule:transcriptional regulator, lrp/asnc family;
PDBTitle: crystal structure of transcriptional regulator nmb0573 and l-leucine2 complex from neisseria meningitidis
27c2jvnA_
not modelled 67.0 32
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: domain c of human parp-1
28c2cfxD_
not modelled 67.0 14
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
29c2elhA_
not modelled 66.8 22
PDB header:dna binding protein
Chain: A: PDB Molecule:cg11849-pa;
PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa
30d1hlva1
not modelled 65.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
31c2e1cA_
not modelled 65.0 19
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
32d1p91a_
not modelled 64.7 26
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA methyltransferase RlmA
33d1twfi2
not modelled 64.4 18
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
34c4pcqC_
not modelled 64.2 27
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
35c2riqA_
not modelled 64.0 32
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: crystal structure of the third zinc-binding domain of human parp-1
36c6o3pA_
not modelled 63.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
37c1i1gA_
not modelled 62.8 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
38c2ia0A_
not modelled 62.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
39c2aklA_
not modelled 59.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
40d2jnea1
not modelled 59.6 25
Fold:Rubredoxin-like
Superfamily:YfgJ-like
Family:YfgJ-like
41c2jneA_
not modelled 59.6 25
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein yfgj;
PDBTitle: nmr structure of e.coli yfgj modelled with two zn+2 bound. northeast2 structural genomics consortium target er317.
42c2dbbA_
not modelled 59.2 11
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
43c4opxD_
not modelled 58.5 32
PDB header:transferase/dna/transferase inhibitor
Chain: D: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: structure of human parp-1 bound to a dna double strand break in2 complex with (2r)-5-fluoro-2-methyl-2,3-dihydro-1-benzofuran-7-3 carboxamide
44c5btrB_
not modelled 57.0 19
PDB header:hydrolase/substrate
Chain: B: PDB Molecule:nad-dependent protein deacetylase sirtuin-1;
PDBTitle: crystal structure of sirt1 in complex with resveratrol and an amc-2 containing peptide
45c4kisA_
not modelled 56.8 13
PDB header:recombination/dna
Chain: A: PDB Molecule:putative integrase [bacteriophage a118];
PDBTitle: crystal structure of a lsr-dna complex
46c2qkdA_
not modelled 56.0 24
PDB header:signaling protein, cell cycle
Chain: A: PDB Molecule:zinc finger protein zpr1;
PDBTitle: crystal structure of tandem zpr1 domains
47d1q1aa_
not modelled 55.1 19
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
48c2gqqB_
not modelled 54.9 14
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
49d1zs4a1
not modelled 54.3 23
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Bacteriophage CII protein
50c4rulA_
not modelled 54.3 18
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
51d2f4ma1
not modelled 53.7 20
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Transglutaminase core
52d1qypa_
not modelled 52.4 32
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
53c4czdA_
not modelled 52.0 8
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
54c2e7xA_
not modelled 51.4 19
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
55d1dgsa1
not modelled 51.4 45
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
56c1pqvS_
not modelled 51.3 18
PDB header:transferase/transcription
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis complex
57c3i4pA_
not modelled 50.8 17
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, asnc family;
PDBTitle: crystal structure of asnc family transcriptional regulator from2 agrobacterium tumefaciens
58d1ma3a_
not modelled 50.3 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
59c1q14A_
not modelled 49.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:hst2 protein;
PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2
60d1i27a_
not modelled 49.4 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of the rap74 subunit of TFIIF
61c5a3aA_
not modelled 49.3 17
PDB header:transferase
Chain: A: PDB Molecule:sir2 family protein;
PDBTitle: crystal structure of the adp-ribosylating sirtuin (sirtm)2 from streptococcus pyogenes (apo form)
62c5fjaI_
not modelled 49.2 29
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
63c2xroE_
not modelled 48.8 26
PDB header:dna-binding protein/dna
Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv;
PDBTitle: crystal structure of ttgv in complex with its dna operator
64c1y1yS_
not modelled 48.2 18
PDB header:transferase/transcription/dna-rna hybrid
Chain: S: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: rna polymerase ii-tfiis-dna/rna complex
65c3a44D_
not modelled 48.1 15
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
66c2vbzA_
not modelled 47.2 25
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
67c5iycU_
not modelled 47.0 19
PDB header:transcription, transferase/dna
Chain: U: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: human core-pic in the initial transcribing state
68c3h0gI_
not modelled 45.9 25
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
69c2jrpA_
not modelled 44.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
70c3e7lD_
not modelled 44.1 8
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
71c6k0bH_
not modelled 43.3 30
PDB header:rna binding protein/rna
Chain: H: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: cryo-em structure of archaeal ribonuclease p with mature trna
72c4czdD_
not modelled 43.0 15
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
73d2akla2
not modelled 42.6 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:PhnA zinc-binding domain
74c5iy9M_
not modelled 42.3 30
PDB header:transcription, transferase/dna/rna
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
75d1tfia_
not modelled 41.5 18
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
76c4i5iA_
not modelled 41.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-1;
PDBTitle: crystal structure of the sirt1 catalytic domain bound to nad and an2 ex527 analog
77c3cc4Z_
not modelled 41.1 36
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: co-crystal structure of anisomycin bound to the 50s ribosomal subunit
78c2zaeB_
not modelled 40.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: crystal structure of protein ph1601p in complex with protein ph1771p2 of archaeal ribonuclease p from pyrococcus horikoshii ot3
79c3floD_
not modelled 39.8 28
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
80d1pzra_
not modelled 39.6 19
Fold:HLH-like
Superfamily:Docking domain B of the erythromycin polyketide synthase (DEBS)
Family:Docking domain B of the erythromycin polyketide synthase (DEBS)
81c2kdxA_
not modelled 39.4 21
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
82c3zf7o_
not modelled 39.3 52
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
83c4rvgA_
not modelled 39.3 13
PDB header:transferase
Chain: A: PDB Molecule:d-mycarose 3-c-methyltransferase;
PDBTitle: crystal structure of mtmc in complex with sam and tdp
84c3alrA_
not modelled 39.3 31
PDB header:metal binding protein
Chain: A: PDB Molecule:nanos protein;
PDBTitle: crystal structure of nanos
85d1dl6a_
not modelled 39.1 30
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
86c2qa4Z_
not modelled 38.4 36
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l37ae;
PDBTitle: a more complete structure of the the l7/l12 stalk of the2 haloarcula marismortui 50s large ribosomal subunit
87c4c2mX_
not modelled 38.2 28
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
88c5zwnY_
not modelled 38.0 32
PDB header:splicing
Chain: Y: PDB Molecule:protein luc7;
PDBTitle: cryo-em structure of the yeast pre-b complex at an average resolution2 of 3.3 angstrom (part ii: u1 snrnp region)
89c1i3qI_
not modelled 37.9 17
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
90c2epqA_
not modelled 37.7 46
PDB header:transcription
Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing
PDBTitle: solution structure of the third zinc finger domain of zinc2 finger protein 278
91c4b6ap_
not modelled 37.5 40
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
92c5oj7A_
not modelled 37.3 28
PDB header:hydrolase
Chain: A: PDB Molecule:nad-dependent protein deacylase;
PDBTitle: sirtuin 4 orthologue from xenopus tropicalis in complex with adp-2 ribose
93d2cg4a1
not modelled 37.2 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
94c3wwnB_
not modelled 37.1 31
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
95c4a17Y_
not modelled 36.5 40
PDB header:ribosome
Chain: Y: PDB Molecule:rpl37a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
96c3vdoA_
not modelled 35.7 8
PDB header:dna binding protein/protein binding
Chain: A: PDB Molecule:rna polymerase sigma factor sigk;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
97c2o8xA_
not modelled 35.3 20
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
98d1ffkw_
not modelled 35.2 44
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
99c5kl1B_
not modelled 34.9 23
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:protein nanos;
PDBTitle: crystal structure of the pumilio-nos-hunchback rna complex
100c2ctdA_
not modelled 33.9 18
PDB header:metal binding protein
Chain: A: PDB Molecule:zinc finger protein 512;
PDBTitle: solution structure of two zf-c2h2 domains from human zinc2 finger protein 512
101d1pvma3
not modelled 33.9 88
Fold:Rubredoxin-like
Superfamily:Hypothetical protein Ta0289 C-terminal domain
Family:Hypothetical protein Ta0289 C-terminal domain
102c4v1oM_
not modelled 33.8 31
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: architecture of the rna polymerase ii-mediator core transcription2 initiation complex
103c6g90H_
not modelled 33.5 19
PDB header:splicing
Chain: H: PDB Molecule:protein luc7,protein luc7,protein luc7;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
104c2l4aA_
not modelled 33.5 17
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
105c1s1i9_
not modelled 33.2 40
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
106c3jyw9_
not modelled 33.0 40
PDB header:ribosome
Chain: 9: PDB Molecule:60s ribosomal protein l43;
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
107c3izrm_
not modelled 32.9 40
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
108d2gnra1
not modelled 32.4 58
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
109c3j21i_
not modelled 31.4 44
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l13p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
110d1qxfa_
not modelled 31.3 35
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27e
111c3j39p_
not modelled 31.3 36
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
112c1umqA_
not modelled 31.2 13
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
113d1umqa_
not modelled 31.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
114d1vqoz1
not modelled 31.0 36
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37ae
115c1yshD_
not modelled 30.6 40
PDB header:structural protein/rna
Chain: D: PDB Molecule:ribosomal protein l37a;
PDBTitle: localization and dynamic behavior of ribosomal protein l30e
116c2zkrz_
not modelled 30.5 40
PDB header:ribosomal protein/rna
Chain: Z: PDB Molecule:e site t-rna;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
117d1m2ka_
not modelled 30.4 42
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
118c4glxA_
not modelled 30.3 36
PDB header:ligase/ligase inhibitor/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: dna ligase a in complex with inhibitor
119c3iz6X_
not modelled 30.3 20
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
120c3zf7t_
not modelled 30.1 15
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite