Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2817c_(-)_3123977_3124993
DateWed Aug 7 12:50:48 BST 2019
Unique Job ID6a663b52a2aec3cc
SequenceMVQLYVSDSV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.436 Y:52.912 Z:66.236
Model (left) based on template c3lfxE_
Top template information
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima
Confidence and coverage
Confidence:100.0% Coverage: 92%
310 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3lfxE_
100.0 20
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: structure of tm1797, a cas1 protein from thermotoga maritima
2c4n06A_
100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endonuclease cas1 1;
PDBTitle: crystal structure of cas1 from archaeoglobus fulgidus and its2 nucleolytic activity
3c2yzsB_
100.0 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of uncharacterized conserved protein from aquifex2 aeolicus
4c3pv9D_
100.0 18
PDB header:immune system
Chain: D: PDB Molecule:putative uncharacterized protein ph1245;
PDBTitle: structure of ph1245, a cas1 from pyrococcus horikoshii
5c4w8kB_
100.0 15
PDB header:viral protein
Chain: B: PDB Molecule:cas1 protein;
PDBTitle: crystal structure of a putative cas1 enzyme from vibrio phage icp1
6c5xvnL_
100.0 20
PDB header:immune system
Chain: L: PDB Molecule:crispr-associated endonuclease cas1;
PDBTitle: e. far cas1-cas2/prespacer binary complex
7c4zkjA_
100.0 17
PDB header:unknown function
Chain: A: PDB Molecule:crispr-associated protein cas1;
PDBTitle: crystal structure of crispr-associated protein
8c5fclD_
100.0 12
PDB header:dna binding protein
Chain: D: PDB Molecule:crispr-associated endonuclease cas1;
PDBTitle: crystal structure of cas1 from pectobacterium atrosepticum
9c3godA_
100.0 14
PDB header:immune system
Chain: A: PDB Molecule:cas1;
PDBTitle: structural basis for dnase activity of a conserved protein2 implicated in crispr-mediated antiviral defense
10c4p6iD_
100.0 15
PDB header:hydrolase
Chain: D: PDB Molecule:crispr-associated endonuclease cas1;
PDBTitle: crystal structure of the cas1-cas2 complex from escherichia coli
11c3nkdB_
100.0 14
PDB header:immune system
Chain: B: PDB Molecule:crispr-associated protein cas1;
PDBTitle: structure of crisp-associated protein cas1 from escherichia coli str.2 k-12
12c3nkeA_
100.0 16
PDB header:immune system
Chain: A: PDB Molecule:protein ygbt;
PDBTitle: high resolution structure of the c-terminal domain crisp-associated2 protein cas1 from escherichia coli str. k-12
13d1p3da1
66.9 13
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
14d2jfga1
65.0 13
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
15d1j6ua1
60.4 16
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
16c5nc8B_
58.7 3
PDB header:transport protein
Chain: B: PDB Molecule:potassium efflux system protein;
PDBTitle: shewanella denitrificans kef ctd in amp bound form
17c3fwzA_
55.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ybal;
PDBTitle: crystal structure of trka-n domain of inner membrane protein ybal from2 escherichia coli
18c3e6mD_
53.3 13
PDB header:transcription regulator
Chain: D: PDB Molecule:marr family transcriptional regulator;
PDBTitle: the crystal structure of a marr family transcriptional2 regulator from silicibacter pomeroyi dss.
19c2hbpA_
46.7 13
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: solution structure of sla1 homology domain 1
20d2hmva1
46.6 6
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
21d1lssa_
not modelled 46.5 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
22c2g1uA_
not modelled 44.8 9
PDB header:transport protein
Chain: A: PDB Molecule:hypothetical protein tm1088a;
PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
23c4khbF_
not modelled 42.4 14
PDB header:transcription/replication
Chain: F: PDB Molecule:uncharacterized protein pob3n;
PDBTitle: structure of the spt16d pob3n heterodimer
24c5z2fA_
not modelled 42.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: nadph/pda bound dihydrodipicolinate reductase from paenisporosarcina2 sp. tg-14
25c3l4bG_
not modelled 39.8 19
PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
26c5xg7A_
not modelled 39.3 8
PDB header:sugar binding protein
Chain: A: PDB Molecule:galactoside-binding soluble lectin 13;
PDBTitle: galectin-13/placental protein 13 crystal structure
27d1id1a_
not modelled 38.3 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
28c3kc2A_
not modelled 38.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ykr070w;
PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae
29c4kzkA_
not modelled 37.4 3
PDB header:sugar binding protein
Chain: A: PDB Molecule:l-arabinose abc transporter, periplasmic l-arabinose-
PDBTitle: the structure of the periplasmic l-arabinose binding protein from2 burkholderia thailandensis
30d1lcla_
not modelled 36.8 13
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
31c4j7cA_
not modelled 36.8 6
PDB header:transport protein
Chain: A: PDB Molecule:ktr system potassium uptake protein a;
PDBTitle: ktrab potassium transporter from bacillus subtilis
32d2ioja1
not modelled 36.4 15
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:DRTGG domain
33c2ealB_
not modelled 36.2 15
PDB header:sugar binding protein
Chain: B: PDB Molecule:galectin-9;
PDBTitle: crystal structure of human galectin-9 n-terminal crd in complex with2 forssman pentasaccharide
34c3lhlA_
not modelled 36.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative agmatinase;
PDBTitle: crystal structure of a putative agmatinase from clostridium difficile
35c2yxsA_
not modelled 34.4 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin-8 variant;
PDBTitle: crystal sturcture of n-terminal domain of human galectin-8 with d-2 lactose
36c4xrfA_
not modelled 34.2 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of mepr like protein complexed with pseudoligands
37c6e20B_
not modelled 33.7 15
PDB header:sugar binding protein
Chain: B: PDB Molecule:galectin;
PDBTitle: crystal structure of the dario rerio galectin-1-l2
38c3llvA_
not modelled 33.5 6
PDB header:nad(p) binding protein
Chain: A: PDB Molecule:exopolyphosphatase-related protein;
PDBTitle: the crystal structure of the nad(p)-binding domain of an2 exopolyphosphatase-related protein from archaeoglobus fulgidus to3 1.7a
39c2ymzF_
not modelled 33.0 13
PDB header:sugar binding protein
Chain: F: PDB Molecule:galectin 2;
PDBTitle: crystal structure of chicken galectin 2
40c5ugjC_
not modelled 32.3 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: crystal structure of htpa reductase from neisseria meningitidis
41c3vv1B_
not modelled 32.3 10
PDB header:sugar binding protein
Chain: B: PDB Molecule:protein lec-6;
PDBTitle: crystal structure of caenorhabditis elegans galectin lec-6
42d1woha_
not modelled 32.0 10
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
43d1a2za_
not modelled 31.7 11
Fold:Phosphorylase/hydrolase-like
Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
44d2gala_
not modelled 30.1 10
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
45c3eywA_
not modelled 29.6 10
PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
46c2d6lX_
not modelled 29.2 18
PDB header:sugar binding protein
Chain: X: PDB Molecule:lectin, galactose binding, soluble 9;
PDBTitle: crystal structure of mouse galectin-9 n-terminal crd2 (crystal form 2)
47d1is3a_
not modelled 29.2 15
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
48d2uubb1
not modelled 26.7 14
Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
49c3nv4A_
not modelled 26.2 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin 9 short isoform variant;
PDBTitle: crystal structure of human galectin-9 c-terminal crd in complex with2 sialyllactose
50c2dycA_
not modelled 25.8 8
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin-4;
PDBTitle: crystal structure of the n-terminal domain of mouse galectin-4
51c3wb9A_
not modelled 25.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:diaminopimelate dehydrogenase;
PDBTitle: crystal structures of meso-diaminopimelate dehydrogenase from2 symbiobacterium thermophilum
52d2nn8a1
not modelled 25.6 13
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
53d1euca1
not modelled 25.2 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
54c4wzzA_
not modelled 25.2 11
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transporter, substrate-binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
55c4f3yA_
not modelled 25.1 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: x-ray crystal structure of dihydrodipicolinate reductase from2 burkholderia thailandensis
56c3nixF_
not modelled 24.8 9
PDB header:oxidoreductase
Chain: F: PDB Molecule:flavoprotein/dehydrogenase;
PDBTitle: crystal structure of flavoprotein/dehydrogenase from cytophaga2 hutchinsonii. northeast structural genomics consortium target chr43.
57c3nipB_
not modelled 24.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:3-guanidinopropionase;
PDBTitle: crystal structure of pseudomonas aeruginosa guanidinopropionase2 complexed with 1,6-diaminohexane
58c4gvlB_
not modelled 24.0 8
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: crystal structure of the gsuk rck domain
59c4ywjB_
not modelled 23.2 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (htpa2 reductase) from pseudomonas aeruginosa
60c3rysA_
not modelled 23.2 8
PDB header:hydrolase
Chain: A: PDB Molecule:adenosine deaminase 1;
PDBTitle: the crystal structure of adenine deaminase (aaur1117) from2 arthrobacter aurescens
61c5kt0A_
not modelled 22.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: dihydrodipicolinate reductase from the industrial and evolutionarily2 important cyanobacteria anabaena variabilis.
62c3bioB_
not modelled 22.9 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase (gfo/idh/moca family member) from2 porphyromonas gingivalis w83
63c4dz4D_
not modelled 22.5 14
PDB header:hydrolase
Chain: D: PDB Molecule:agmatinase;
PDBTitle: x-ray crystal structure of a hypothetical agmatinase from burkholderia2 thailandensis
64d1xfka_
not modelled 22.2 20
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
65d1c1la_
not modelled 22.1 18
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
66c4hl0B_
not modelled 22.0 15
PDB header:sugar binding protein
Chain: B: PDB Molecule:galectin;
PDBTitle: crystal structure of full-length toxascaris leonina galectin
67c4rxuA_
not modelled 21.7 3
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 caur_1924 from chloroflexus aurantiacus, target efi-511158, in3 complex with d-glucose
68c3jw4C_
not modelled 21.6 14
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family;
PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum
69d1oi7a1
not modelled 21.5 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
70c4j0eB_
not modelled 21.4 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:probable 3-hydroxyacyl-coa dehydrogenase f54c8.1;
PDBTitle: crystal structure of 3-hydroxyacyl-coa dehydrogenase from2 caenorhadbitis elegans in p1 space group
71d1ko7a1
not modelled 21.3 9
Fold:MurF and HprK N-domain-like
Superfamily:HprK N-terminal domain-like
Family:HPr kinase/phoshatase HprK N-terminal domain
72c3k6jA_
not modelled 21.0 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein f01g10.3, confirmed by transcript evidence;
PDBTitle: crystal structure of the dehydrogenase part of multifuctional enzyme 12 from c.elegans
73c3m1rF_
not modelled 20.8 17
PDB header:hydrolase
Chain: F: PDB Molecule:formimidoylglutamase;
PDBTitle: the crystal structure of formimidoylglutamase from bacillus2 subtilis subsp. subtilis str. 168
74d2aeba1
not modelled 20.8 10
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
75c3ff4A_
not modelled 20.6 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
76d1hlca_
not modelled 20.3 15
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
77d1a9xa4
not modelled 20.3 6
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
78c5zeeA_
not modelled 20.3 19
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:arginase;
PDBTitle: crystal structure of entamoeba histolytica arginase in complex with2 n(omega)-hydroxy-l-arginine (noha) at 1.74 a
79c1jrxA_
not modelled 19.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavocytochrome c;
PDBTitle: crystal structure of arg402ala mutant flavocytochrome c32 from shewanella frigidimarina
80c3wudA_
not modelled 19.9 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin;
PDBTitle: x-ray crystal structure of xenopus laevis galectin-ib
81c3b9cB_
not modelled 19.9 21
PDB header:unknown function
Chain: B: PDB Molecule:hspc159;
PDBTitle: crystal structure of human grp crd
82d1gq6a_
not modelled 19.7 6
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
83c5tenH_
not modelled 19.4 22
PDB header:oxidoreductase
Chain: H: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: structure of 4-hydroxy-tetrahydrodipicolinate reductase from vibrio2 vulnificus with 2,5 furan dicarboxylic and nadh with intact3 polyhistidine tag
84c3uugB_
not modelled 18.9 3
PDB header:sugar binding protein
Chain: B: PDB Molecule:multiple sugar-binding periplasmic receptor chve;
PDBTitle: crystal structure of the periplasmic sugar binding protein chve
85c1j6uA_
not modelled 18.9 10
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase murc (tm0231)2 from thermotoga maritima at 2.3 a resolution
86d1pq3a_
not modelled 18.6 13
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
87d1qmja_
not modelled 18.4 21
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
88d2d59a1
not modelled 18.2 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
89c1s3bB_
not modelled 18.1 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
90d1zhva2
not modelled 18.1 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
91c6aioA_
not modelled 17.9 13
PDB header:flavoprotein
Chain: A: PDB Molecule:pnpa;
PDBTitle: crystal structure of p-nitrophenol 4-monooxygenase pnpa from2 pseudomonas putida dll-e4
92c3bchA_
not modelled 17.8 8
PDB header:cell adhesion, ribosomal protein
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: crystal structure of the human laminin receptor precursor
93d1w6na_
not modelled 17.6 16
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
94c5j97B_
not modelled 17.5 8
PDB header:rna binding protein
Chain: B: PDB Molecule:caprin-2;
PDBTitle: dimerization domain of cytoplasmic activation/proliferation-associated2 protein-2 (caprin-2)
95c6nr2C_
not modelled 17.3 12
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
96c6nr2D_
not modelled 17.3 12
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
97c6nr2B_
not modelled 17.3 12
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
98c6nr2A_
not modelled 17.3 12
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
99c1x50A_
not modelled 17.3 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:galectin-4;
PDBTitle: solution structure of the c-terminal gal-bind lectin domain2 from human galectin-4

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Transmembrane helix prediction 

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