Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2818c_(-)_3125006_3126154
DateWed Aug 7 12:50:48 BST 2019
Unique Job IDd895f1085aa0925f
SequenceVLFLSAEIAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.441 Y:51.755 Z:40.600
Model (left) based on template c4rgpA_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:csm6_iii-a;
PDBTitle: crystal structure of uncharacterized crispr/cas system-associated2 protein csm6 from streptococcus mutans
Confidence and coverage
Confidence:100.0% Coverage: 59%
227 residues ( 59% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
355 residues ( 93%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4rgpA_



100.0 17
PDB header:unknown function
Chain: A: PDB Molecule:csm6_iii-a;
PDBTitle: crystal structure of uncharacterized crispr/cas system-associated2 protein csm6 from streptococcus mutans
2c5yjcB_



100.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:csm6;
PDBTitle: structural insights into the crispr-cas-associated ribonuclease2 activity of staphylococcus epidermidis csm6
3c5fshA_



99.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:csm6;
PDBTitle: crystal structure of thermus thermophilus csm6
4d1xmxa_



97.7 11
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hypothetical protein VC1899
5c2wteB_



91.9 13
PDB header:antiviral protein
Chain: B: PDB Molecule:csa3;
PDBTitle: the structure of the crispr-associated protein, csa3, from2 sulfolobus solfataricus at 1.8 angstrom resolution.
6c2dplA_



51.0 22
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b;
PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3
7c2c4mA_



35.0 25
PDB header:transferase
Chain: A: PDB Molecule:glycogen phosphorylase;
PDBTitle: starch phosphorylase: structural studies explain oxyanion-dependent2 kinetic stability and regulatory control.
8d2atia1



34.4 29
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
9c3ddsB_



34.2 29
PDB header:transferase
Chain: B: PDB Molecule:glycogen phosphorylase, liver form;
PDBTitle: crystal structure of glycogen phosphorylase complexed with an2 anthranilimide based inhibitor gsk261
10d1l5wa_



33.6 38
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
11c3jq3A_



33.5 13
PDB header:transferase
Chain: A: PDB Molecule:lombricine kinase;
PDBTitle: crystal structure of lombricine kinase, complexed with substrate adp
12c4l22A_



33.3 38
PDB header:transferase
Chain: A: PDB Molecule:phosphorylase;
PDBTitle: crystal structure of putative glycogen phosphorylase from2 streptococcus mutans
13d1ygpa_



31.6 25
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
14d2gj4a1



31.3 29
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Oligosaccharide phosphorylase
15c5lrbB_



31.3 29
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,4 glucan phosphorylase;
PDBTitle: plastidial phosphorylase from barley in complex with acarbose
16c3p52B_



29.5 10
PDB header:ligase
Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: nh3-dependent nad synthetase from campylobacter jejuni subsp. jejuni2 nctc 11168 in complex with the nitrate ion
17c3c65A_



29.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of bacillus stearothermophilus uvrc 5' endonuclease2 domain
18c2dt7A_



27.8 14
PDB header:rna binding protein
Chain: A: PDB Molecule:splicing factor 3a subunit 3;
PDBTitle: solution structure of the second surp domain of human2 splicing factor sf3a120 in complex with a fragment of3 human splicing factor sf3a60
19c4lw2C_



27.1 16
PDB header:lyase
Chain: C: PDB Molecule:cysteine sulfinate desulfinase;
PDBTitle: structural changes during cysteine desulfurase csda and sulfur-2 acceptor csde interactions provide insight into the trans-3 persulfuration
20c2yrrA_



25.4 16
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class v;
PDBTitle: hypothetical alanine aminotransferase (tth0173) from thermus2 thermophilus hb8
21c4q1tD_



not modelled 21.6 17
PDB header:transferase
Chain: D: PDB Molecule:glutamate 5-kinase;
PDBTitle: crystal structure of a glutamate 5-kinase from burkholderia2 thailandensis
22c5xj0Y_



not modelled 21.3 20
PDB header:transferase/transcription
Chain: Y: PDB Molecule:gp76;
PDBTitle: t. thermophilus rna polymerase holoenzyme bound with gp39 and gp76
23d3brja1



not modelled 20.1 13
Fold:MtlR-like
Superfamily:MtlR-like
Family:MtlR-like
24d1ej7l1



not modelled 19.9 20
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
25c4wo8A_



not modelled 18.9 13
PDB header:transferase
Chain: A: PDB Molecule:taurocyamine kinase;
PDBTitle: the substrate-free duplicated taurocyamine kinase from schistosoma2 mansoni
26c2pc4B_



not modelled 18.6 17
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: crystal structure of fructose-bisphosphate aldolase from plasmodium2 falciparum in complex with trap-tail determined at 2.4 angstrom3 resolution
27c3a2kB_



not modelled 18.3 8
PDB header:ligase/rna
Chain: B: PDB Molecule:trna(ile)-lysidine synthase;
PDBTitle: crystal structure of tils complexed with trna
28c3qyfA_



not modelled 18.3 12
PDB header:antiviral protein
Chain: A: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of the crispr-associated protein sso1393 from2 sulfolobus solfataricus
29d1pbva_



not modelled 18.2 10
Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
30d1a5ca_



not modelled 18.2 17
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
31d1h0ca_



not modelled 18.1 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
32c2r09A_



not modelled 18.1 12
PDB header:signaling protein
Chain: A: PDB Molecule:cytohesin-3;
PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor
33c4bqeA_



not modelled 17.4 55
PDB header:transferase
Chain: A: PDB Molecule:alpha-glucan phosphorylase 2,4-glucan phosphorylase;
PDBTitle: arabidopsis thaliana cytosolic alpha-1,4-glucan phosphorylase (phs2)
34d1bwva1



not modelled 17.4 14
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
35c5j8qA_



not modelled 17.3 9
PDB header:transferase
Chain: A: PDB Molecule:cysteine desulfurase sufs;
PDBTitle: crystal structure of the cysteine desulfurase sufs of bacillus2 subtilis
36c4q76B_



not modelled 17.2 11
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase 2, chloroplastic;
PDBTitle: crystal structure of nfs2 c384s mutant, the plastidial cysteine2 desulfurase from arabidopsis thaliana
37c1ylmA_



not modelled 17.1 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bsu32300;
PDBTitle: structure of cytosolic protein of unknown function yute2 from bacillus subtilis
38c2l53B_



not modelled 17.0 24
PDB header:ca-binding protein/proton transport
Chain: B: PDB Molecule:voltage-gated sodium channel type v alpha isoform b
PDBTitle: solution nmr structure of apo-calmodulin in complex with the iq motif2 of human cardiac sodium channel nav1.5
39c3tqiB_



not modelled 16.6 13
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: structure of the gmp synthase (guaa) from coxiella burnetii
40d1t3ia_



not modelled 15.7 13
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
41c5uz9B_



not modelled 15.4 16
PDB header:immune system/rna
Chain: B: PDB Molecule:crispr-associated protein csy2;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
42d1jf9a_



not modelled 15.3 5
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
43d1wdda1



not modelled 15.3 23
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
44c5yepC_



not modelled 14.9 12
PDB header:antitoxin/toxin
Chain: C: PDB Molecule:toxin-antitoxin system toxin hepn family;
PDBTitle: crystal structure of so_3166-so_3165 from shewanella oneidensis
45c1rl9A_



not modelled 14.5 14
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex
46c6cetD_



not modelled 13.6 20
PDB header:signaling protein
Chain: D: PDB Molecule:gator complex protein depdc5;
PDBTitle: cryo-em structure of gator1
47c5kodA_



not modelled 13.1 23
PDB header:ligase
Chain: A: PDB Molecule:indole-3-acetic acid-amido synthetase gh3.5;
PDBTitle: crystal structure of gh3.5 acyl acid amido synthetase from arabidopsis2 thaliana
48c2j5tF_



not modelled 12.9 20
PDB header:transferase
Chain: F: PDB Molecule:glutamate 5-kinase;
PDBTitle: glutamate 5-kinase from escherichia coli complexed with2 glutamate
49d1bc9a_



not modelled 12.8 10
Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
50c3iprC_



not modelled 12.6 18
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
51c2dt8A_



not modelled 12.5 18
PDB header:lipid binding protein
Chain: A: PDB Molecule:degv family protein;
PDBTitle: fatty acid binding of a degv family protein from thermus thermophilus
52d1bxna1



not modelled 12.5 26
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
53d2r09a1



not modelled 12.3 11
Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
54c4h51B_



not modelled 12.2 20
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of a putative aspartate aminotransferase from2 leishmania major friedlin
55c4eplA_



not modelled 12.0 15
PDB header:ligase
Chain: A: PDB Molecule:jasmonic acid-amido synthetase jar1;
PDBTitle: crystal structure of arabidopsis thaliana gh3.11 (jar1) in complex2 with ja-ile
56d1rbla1



not modelled 12.0 20
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
57d1zara1



not modelled 11.9 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rio2 serine protein kinase N-terminal domain
58d1un8a4



not modelled 11.7 16
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
59c1mgpA_



not modelled 11.5 15
PDB header:lipid binding protein
Chain: A: PDB Molecule:hypothetical protein tm841;
PDBTitle: hypothetical protein tm841 from thermotoga maritima reveals2 fatty acid binding function
60d1mgpa_



not modelled 11.5 15
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DegV-like
61c3j21e_



not modelled 11.4 38
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
62c6bbqA_



not modelled 11.2 12
PDB header:lipid binding protein
Chain: A: PDB Molecule:cytohesin-3,adp-ribosylation factor 6;
PDBTitle: model for extended volume of truncated monomeric cytohesin-3 (grp1;2 amino acids 63-399) e161a arf6 q67l fusion protein
63c1bwvA_



not modelled 11.2 14
PDB header:lyase
Chain: A: PDB Molecule:protein (ribulose bisphosphate carboxylase);
PDBTitle: activated ribulose 1,5-bisphosphate carboxylase/oxygenase (rubisco)2 complexed with the reaction intermediate analogue 2-carboxyarabinitol3 1,5-bisphosphate
64d1r8se_



not modelled 10.9 9
Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
65c4x9xA_



not modelled 10.8 16
PDB header:transferase
Chain: A: PDB Molecule:degv domain-containing protein mw1315;
PDBTitle: biochemical roles for conserved residues in the bacterial fatty acid2 binding protein family
66d1m15a1



not modelled 10.7 15
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
67c3lfhF_



not modelled 10.6 13
PDB header:transferase
Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific
PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis
68c6ov0D_



not modelled 10.5 18
PDB header:immune system/rna
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of csm6 in complex with a4>p by soaking a4>p into2 csm6
69c3uowB_



not modelled 10.4 13
PDB header:ligase
Chain: B: PDB Molecule:gmp synthetase;
PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
70c5w70B_



not modelled 10.3 19
PDB header:transferase
Chain: B: PDB Molecule:l-glutamine:2-deoxy-scyllo-inosose aminotransferase;
PDBTitle: x-ray structure of rbmb from streptomyces ribosidificus
71c5ijgB_



not modelled 10.1 21
PDB header:hydrolase
Chain: B: PDB Molecule:cys/met metabolism pyridoxal-phosphate-dependent enzyme;
PDBTitle: crystal structure of o-acetylhomoserine sulfhydrolase from brucella2 melitensis at 2.0 a resolution
72c3ffrA_



not modelled 10.1 14
PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
73c3zrrB_



not modelled 10.1 16
PDB header:transferase
Chain: B: PDB Molecule:serine-pyruvate aminotransferase (agxt);
PDBTitle: crystal structure and substrate specificity of a thermophilic2 archaeal serine : pyruvate aminotransferase from sulfolobus3 solfataricus
74d1g0wa1



not modelled 9.9 16
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
75c3ct4B_



not modelled 9.8 18
PDB header:transferase
Chain: B: PDB Molecule:pts-dependent dihydroxyacetone kinase, dihydroxyacetone-
PDBTitle: structure of dha-kinase subunit dhak from l. lactis
76c2vxoB_



not modelled 9.5 10
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
77d8ruca1



not modelled 9.5 20
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
78d1xnga1



not modelled 9.4 10
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
79c2wh7A_



not modelled 9.3 56
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase-phage associated;
PDBTitle: the partial structure of a group a streptpcoccal phage-2 encoded tail fibre hyaluronate lyase hylp2
80c4nncA_



not modelled 9.3 16
PDB header:lyase
Chain: A: PDB Molecule:obca, oxalate biosynthetic component a;
PDBTitle: ternary complex of obca with c4-coa adduct and oxalate
81c2dr1A_



not modelled 9.1 21
PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
82c1rldB_



not modelled 9.1 20
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose 1,5 bisphosphate carboxylase/oxygenase (large
PDBTitle: solid-state phase transition in the crystal structure of ribulose 1,5-2 biphosphate carboxylase(slash)oxygenase
83d1gpma1



not modelled 9.1 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
84c6dkeA_



not modelled 9.0 13
PDB header:transferase
Chain: A: PDB Molecule:fatty acid kinase (fak) b1 protein;
PDBTitle: the x-ray crystal structure of streptococcus pneumoniae fatty acid2 kinase (fak) b1 protein loaded with palmitic acid (c16:0) to 1.763 angstrom resolution
85c2g7zB_



not modelled 9.0 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein spy1493;
PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids
86d1r0ka2



not modelled 9.0 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
87c4c2mQ_



not modelled 8.7 13
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase i subunit rpa135;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
88c3mtqA_



not modelled 8.6 19
PDB header:transferase
Chain: A: PDB Molecule:putative phosphoenolpyruvate-dependent sugar
PDBTitle: crystal structure of a putative phosphoenolpyruvate-dependent sugar2 phosphotransferase system (pts) permease (kpn_04802) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a resolution
89d1svda1



not modelled 8.6 23
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
90c6hxiC_



not modelled 8.5 4
PDB header:lyase
Chain: C: PDB Molecule:citrate lyase, subunit 1;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
91d1tlha_



not modelled 8.4 13
Fold:Anti-sigma factor AsiA
Superfamily:Anti-sigma factor AsiA
Family:Anti-sigma factor AsiA
92c3mmtC_



not modelled 8.2 19
PDB header:hydrolase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: crystal structure of fructose bisphosphate aldolase from bartonella2 henselae, bound to fructose bisphosphate
93c5svaU_



not modelled 8.2 11
PDB header:transcription, transferase/dna
Chain: U: PDB Molecule:mediator of rna polymerase ii transcription subunit 7;
PDBTitle: mediator-rna polymerase ii pre-initiation complex
94d1zd0a1



not modelled 8.2 10
Fold:PF0523-like
Superfamily:PF0523-like
Family:PF0523-like
95d1vrpa1



not modelled 8.2 11
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
96c1gpmD_



not modelled 8.1 17
PDB header:transferase (glutamine amidotransferase)
Chain: D: PDB Molecule:gmp synthetase;
PDBTitle: escherichia coli gmp synthetase complexed with amp and pyrophosphate
97d2ckca1



not modelled 8.1 30
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
98c2ckcA_



not modelled 8.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
99d1wtya_



not modelled 7.9 15
Fold:Four-helical up-and-down bundle
Superfamily:Nucleotidyltransferase substrate binding subunit/domain
Family:Family 1 bi-partite nucleotidyltransferase subunit

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