Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2819c_(-)_3126250_3127377
DateWed Aug 7 12:50:48 BST 2019
Unique Job ID284802dcfae175cd
SequenceMNTYLKPFEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:72.586 Y:58.362 Z:68.197
Model (left) based on template c6ig0H_
Top template information
PDB header:rna binding protein
Chain: H: PDB Molecule:type iii-a crispr-associated ramp protein csm5;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
Confidence and coverage
Confidence:100.0% Coverage: 90%
339 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ig0H_



100.0 30
PDB header:rna binding protein
Chain: H: PDB Molecule:type iii-a crispr-associated ramp protein csm5;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
2c6musF_



100.0 22
PDB header:rna binding protein/rna
Chain: F: PDB Molecule:uncharacterized protein csm5;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
3c6musK_



99.6 21
PDB header:rna binding protein/rna
Chain: K: PDB Molecule:uncharacterized protein csm3;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
4c4w8vA_



99.6 18
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr6;
PDBTitle: crystal structure of cmr6 from pyrococcus furiosus
5c6ifnF_



99.5 22
PDB header:rna binding protein
Chain: F: PDB Molecule:type iii-a crispr-associated ramp protein csm3;
PDBTitle: crystal structure of type iii-a crispr csm complex
6c4qtsC_



99.4 23
PDB header:rna binding protein
Chain: C: PDB Molecule:crispr type iii-associated ramp protein csm3;
PDBTitle: crystal structure of csm3-csm4 subcomplex in the type iii-a crispr-cas2 interference complex
7c5yjdB_



99.4 20
PDB header:hydrolase
Chain: B: PDB Molecule:csm3;
PDBTitle: structural insights into the crispr-cas-associated ribonuclease2 activity of staphylococcus epidermidis csm3
8c6ae2B_



99.3 16
PDB header:rna binding protein
Chain: B: PDB Molecule:csm3;
PDBTitle: crystal structure of csm3 of the type iii-a crispr-cas effector2 complex
9c3x1lE_



99.3 27
PDB header:rna binding protein/rna/dna
Chain: E: PDB Molecule:cmr4;
PDBTitle: crystal structure of the crispr-cas rna silencing cmr complex bound to2 a target analog
10c4n0lB_



99.0 18
PDB header:rna binding protein
Chain: B: PDB Molecule:predicted component of a thermophile-specific dna repair
PDBTitle: methanopyrus kandleri csm3 crystal structure
11c4w8wB_



99.0 39
PDB header:hydrolase
Chain: B: PDB Molecule:crispr system cmr subunit cmr4;
PDBTitle: crystal structure of oligomeric cmr4 from pyrococcus furiosus
12c3x1lH_



98.9 13
PDB header:rna binding protein/rna/dna
Chain: H: PDB Molecule:cmr6;
PDBTitle: crystal structure of the crispr-cas rna silencing cmr complex bound to2 a target analog
13c4w8xA_



83.4 5
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr1-1;
PDBTitle: crystal structure of cmr1 from pyrococcus furiosus bound to a2 nucleotide
14c3ijeB_



77.3 15
PDB header:protein binding
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: crystal structure of the complete integrin alhavbeta3 ectodomain plus2 an alpha/beta transmembrane fragment
15c3k6sB_



60.2 21
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-2;
PDBTitle: structure of integrin alphaxbeta2 ectodomain
16c1u3fA_



58.3 38
PDB header:ligase
Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase;
PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087)
17d1sbqa_



58.3 38
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
18c2jcbA_



52.2 31
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein;
PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489)
19c3hy4A_



50.1 38
PDB header:ligase
Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase;
PDBTitle: structure of human mthfs with n5-iminium phosphate
20d1wkca_



48.7 31
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
21c1ydmC_



not modelled 45.7 31
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein yqgn;
PDBTitle: x-ray structure of northeast structural genomics target sr44
22c1u8cB_



not modelled 40.9 15
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: a novel adaptation of the integrin psi domain revealed from its2 crystal structure
23c2q6mA_



not modelled 39.8 30
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: catalytic fragment of cholix toxin from vibrio cholerae in complex2 with the pj34 inhibitor
24d1soua_



not modelled 38.8 38
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:Methenyltetrahydrofolate synthetase
25c4l6uB_



not modelled 36.9 33
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of af1868: cmr1 subunit of the cmr rna silencing2 complex
26c4h4kA_



not modelled 33.5 29
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr3;
PDBTitle: structure of the cmr2-cmr3 subcomplex of the cmr rna-silencing complex
27d1qr0a1



not modelled 30.7 31
Fold:4'-phosphopantetheinyl transferase
Superfamily:4'-phosphopantetheinyl transferase
Family:4'-Phosphopantetheinyl transferase SFP
28c2q5tA_



not modelled 30.7 30
PDB header:toxin
Chain: A: PDB Molecule:cholix toxin;
PDBTitle: full-length cholix toxin from vibrio cholerae
29c2lycA_



not modelled 28.6 67
PDB header:protein binding
Chain: A: PDB Molecule:spindle and kinetochore-associated protein 1 homolog;
PDBTitle: structure of c-terminal domain of ska1
30d1ikpa2



not modelled 25.3 41
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
31d2ix0a3



not modelled 22.0 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
32c4um9D_



not modelled 20.7 22
PDB header:immune system
Chain: D: PDB Molecule:integrin beta-6;
PDBTitle: crystal structure of alpha v beta 6 with peptide
33c6n1nA_



not modelled 19.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of class d beta-lactamase from sebaldella termitidis2 atcc 33386
34c2it0A_



not modelled 18.7 42
PDB header:transcription/dna
Chain: A: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of a two-domain ider-dna complex crystal2 form ii
35c5bv3C_



not modelled 18.0 13
PDB header:hydrolase
Chain: C: PDB Molecule:m7gpppx diphosphatase;
PDBTitle: yeast scavenger decapping enzyme in complex with m7gdp
36c1ikqA_



not modelled 16.9 41
PDB header:transferase
Chain: A: PDB Molecule:exotoxin a;
PDBTitle: pseudomonas aeruginosa exotoxin a, wild type
37c1qr0A_



not modelled 16.3 29
PDB header:transferase
Chain: A: PDB Molecule:4'-phosphopantetheinyl transferase sfp;
PDBTitle: crystal structure of the 4'-phosphopantetheinyl transferase sfp-2 coenzyme a complex
38c2ixsB_



not modelled 15.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:sdai restriction endonuclease;
PDBTitle: structure of sdai restriction endonuclease
39c1cjyB_



not modelled 15.9 11
PDB header:hydrolase
Chain: B: PDB Molecule:protein (cytosolic phospholipase a2);
PDBTitle: human cytosolic phospholipase a2
40c4gn2A_



not modelled 15.8 27
PDB header:hydrolase
Chain: A: PDB Molecule:oxacillinase;
PDBTitle: crystal structure of oxa-45, a class d beta-lactamase with extended2 spectrum activity
41c4xpuA_



not modelled 14.9 80
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease v;
PDBTitle: the crystal structure of endov from e.coli
42c3ga2A_



not modelled 14.6 80
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease v;
PDBTitle: crystal structure of the endonuclease_v (bsu36170) from bacillus2 subtilis, northeast structural genomics consortium target sr624
43c2mmbA_



not modelled 14.4 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein yp_001712342.1 from acinetobacter2 baumannii
44c4xb6D_



not modelled 14.3 36
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
45d1rutx3



not modelled 14.2 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
46c3jszA_



not modelled 14.2 12
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc
47c4nspA_



not modelled 14.1 80
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease v;
PDBTitle: crystal structure of human endov
48c2moqA_



not modelled 13.6 11
PDB header:protein binding
Chain: A: PDB Molecule:iron-regulated surface determinant protein b;
PDBTitle: solution structure and molecular determinants of hemoglobin binding of2 the first neat domain of isdb in staphylococcus aureus
49d1k38a_



not modelled 13.5 40
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
50d1isua_



not modelled 13.4 50
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
51c4khbF_



not modelled 13.3 63
PDB header:transcription/replication
Chain: F: PDB Molecule:uncharacterized protein pob3n;
PDBTitle: structure of the spt16d pob3n heterodimer
52c6bn3A_



not modelled 13.2 29
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: ctx-m-151 class a extended-spectrum beta-lactamase apo crystal2 structure at 1.3 angstrom resolution.
53c3gocB_



not modelled 13.1 100
PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease v;
PDBTitle: crystal structure of the endonuclease v (sav1684) from streptomyces2 avermitilis. northeast structural genomics consortium target svr196
54c2w36B_



not modelled 13.0 80
PDB header:hydrolase
Chain: B: PDB Molecule:endonuclease v;
PDBTitle: structures of endonuclease v with dna reveal initiation of2 deaminated adenine repair
55c5u1lA_



not modelled 12.8 10
PDB header:membrane protein
Chain: A: PDB Molecule:p2x purinoceptor;
PDBTitle: crystal structure of the atp-gated p2x7 ion channel in the closed, apo2 state
56c4jbfB_



not modelled 12.7 20
PDB header:transferase
Chain: B: PDB Molecule:peptidoglycan glycosyltransferase;
PDBTitle: crystal structure of peptidoglycan glycosyltransferase from atopobium2 parvulum dsm 20469.
57c1cm4B_



not modelled 12.6 30
PDB header:calcium-binding/transferase
Chain: B: PDB Molecule:calmodulin-dependent protein kinase ii-alpha;
PDBTitle: motions of calmodulin-four-conformer refinement
58c1cm1B_



not modelled 12.6 30
PDB header:complex (calcium-binding/transferase)
Chain: B: PDB Molecule:calmodulin-dependent protein kinase ii-alpha;
PDBTitle: motions of calmodulin-single-conformer refinement
59c1cdmB_



not modelled 12.6 30
PDB header:calcium-binding protein
Chain: B: PDB Molecule:calmodulin;
PDBTitle: modulation of calmodulin plasticity in molecular2 recognition on the basis of x-ray structures
60c4k0xA_



not modelled 12.5 47
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: x-ray crystal structure of oxa-23 from acinetobacter baumannii
61c3gp2B_



not modelled 12.5 30
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: calmodulin bound to peptide from calmodulin kinase ii2 (camkii)
62c5xw6B_



not modelled 12.5 14
PDB header:membrane protein
Chain: B: PDB Molecule:p2x purinoceptor;
PDBTitle: crystal structure of the chicken atp-gated p2x7 receptor channel in2 the presence of competitive antagonist tnp-atp at 3.1 angstroms
63d1r5ba3



not modelled 12.3 40
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
64c4hlxD_



not modelled 12.2 12
PDB header:dna binding protein
Chain: D: PDB Molecule:k9;
PDBTitle: the crystal structure of the dna binding domain of virf-1 from the2 oncogenic kshv
65d1xa1a_



not modelled 12.1 37
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
66c3i5dC_



not modelled 11.9 14
PDB header:transport protein
Chain: C: PDB Molecule:p2x purinoceptor;
PDBTitle: crystal structure of the atp-gated p2x4 ion channel in the closed, apo2 state at 3.5 angstroms (r3)
67c6gnyD_



not modelled 11.6 33
PDB header:structural protein
Chain: D: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex
68c2wd6B_



not modelled 11.6 24
PDB header:cell adhesion
Chain: B: PDB Molecule:agglutinin receptor;
PDBTitle: crystal structure of the variable domain of the streptococcus gordonii2 surface protein sspb
69c6gnxB_



not modelled 11.5 33
PDB header:structural protein
Chain: B: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex -2 selenomethionine derivative
70c3fcuB_



not modelled 11.3 15
PDB header:cell adhesion/blood clotting
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: structure of headpiece of integrin aiibb3 in open conformation
71c3vi3D_



not modelled 10.6 14
PDB header:cell adhesion/immune system
Chain: D: PDB Molecule:integrin beta-1;
PDBTitle: crystal structure of alpha5beta1 integrin headpiece (ligand-free form)
72d2pifa1



not modelled 10.1 36
Fold:PSTPO5379-like
Superfamily:PSTPO5379-like
Family:PSTPO5379-like
73c4kt3B_



not modelled 9.8 42
PDB header:hydrolase
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: structure of a type vi secretion system effector-immunity complex from2 pseudomonas protegens
74c3oqcB_



not modelled 9.6 63
PDB header:hydrolase
Chain: B: PDB Molecule:ufm1-specific protease 2;
PDBTitle: ubiquitin-fold modifier 1 specific protease, ufsp2
75c6nhsA_



not modelled 9.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from nostoc
76c4oh0A_



not modelled 9.6 40
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase oxa-58;
PDBTitle: crystal structure of oxa-58 carbapenemase
77c2jc7A_



not modelled 9.5 44
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase oxa-24;
PDBTitle: the crystal structure of the carbapenemase oxa-24 reveals2 new insights into the mechanism of carbapenem-hydrolysis
78c3j7yf_



not modelled 9.0 21
PDB header:ribosome
Chain: F: PDB Molecule:ul4;
PDBTitle: structure of the large ribosomal subunit from human mitochondria
79c4byrP_



not modelled 8.9 50
PDB header:ribosome
Chain: P: PDB Molecule:eukaryotic translation initiation factor 5b;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
80d1itza3



not modelled 8.8 30
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
81c5ctmB_



not modelled 8.7 30
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: structure of bpu1 beta-lactamase
82d1irxa2



not modelled 8.6 25
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
83c2hdnJ_



not modelled 8.6 50
PDB header:translation
Chain: J: PDB Molecule:elongation factor ef-tu;
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
84c2z84A_



not modelled 8.5 63
PDB header:hydrolase
Chain: A: PDB Molecule:ufm1-specific protease 1;
PDBTitle: insights from crystal and solution structures of mouse ufsp1
85d1rr7a_



not modelled 8.3 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
86c1rr7A_



not modelled 8.3 21
PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
87c2xi5D_



not modelled 8.1 24
PDB header:transferase
Chain: D: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
88c5cv1A_



not modelled 8.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:p granule abnormality protein 1;
PDBTitle: c. elegans pgl-1 dimerization domain
89d1tuba1



not modelled 8.0 29
Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
90c2xi7B_



not modelled 8.0 24
PDB header:transferase
Chain: B: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
91c3c26A_



not modelled 8.0 50
PDB header:transferase
Chain: A: PDB Molecule:putative acetyltransferase ta0821;
PDBTitle: crystal structure of a putative acetyltransferase (np_394282.1) from2 thermoplasma acidophilum at 2.00 a resolution
92c6k0bH_



not modelled 8.0 22
PDB header:rna binding protein/rna
Chain: H: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: cryo-em structure of archaeal ribonuclease p with mature trna
93c5k0yS_



not modelled 7.8 25
PDB header:translation
Chain: S: PDB Molecule:eukaryotic initiation factor 2 gamma subunit (eif2-gamma);
PDBTitle: m48s late-stage initiation complex, purified from rabbit reticulocytes2 lysates, displaying eif2 ternary complex and eif3 i and g subunits3 relocated to the intersubunit face
94c6ei1A_



not modelled 7.8 63
PDB header:hydrolase
Chain: A: PDB Molecule:zinc finger with ufm1-specific peptidase domain protein;
PDBTitle: crystal structure of the covalent complex between deubiquitinase zufsp2 (zup1) and ubiquitin-pa
95c3hbrD_



not modelled 7.7 30
PDB header:hydrolase
Chain: D: PDB Molecule:oxa-48;
PDBTitle: crystal structure of oxa-48 beta-lactamase
96c6gbsB_



not modelled 7.7 12
PDB header:hydrolase
Chain: B: PDB Molecule:putative mrna decapping protein;
PDBTitle: crystal structure of the c. themophilum scavenger decapping enzyme2 dcps apo form
97c2cg5A_



not modelled 7.6 14
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:l-aminoadipate-semialdehyde dehydrogenase-
PDBTitle: structure of aminoadipate-semialdehyde dehydrogenase-2 phosphopantetheinyl transferase in complex with cytosolic acyl3 carrier protein and coenzyme a
98d1tubb1



not modelled 7.5 18
Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
99c5e2fB_



not modelled 7.4 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase ybxi;
PDBTitle: crystal structure of beta-lactamase class d from bacillus subtilis

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