Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2822c_(-)_3128983_3129357
DateWed Aug 7 12:50:48 BST 2019
Unique Job ID79f3ca5db745e7ff
SequenceMSVIQDDYVK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.789 Y:43.994 Z:36.742
Model (left) based on template c6ifuB_
Top template information
PDB header:rna binding protein
Chain: B: PDB Molecule:type iii-a crispr-associated protein csm2;
PDBTitle: cryo-em structure of type iii-a csm-ctr2-dsdna complex
Confidence and coverage
Confidence:100.0% Coverage: 92%
114 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ifuB_



100.0 48
PDB header:rna binding protein
Chain: B: PDB Molecule:type iii-a crispr-associated protein csm2;
PDBTitle: cryo-em structure of type iii-a csm-ctr2-dsdna complex
2c6ae1B_



100.0 30
PDB header:rna binding protein
Chain: B: PDB Molecule:crispr-associated protein, tm1810 family;
PDBTitle: crystal structure of csm2 of the type iii-a crispr-cas effector2 complex
3c5an6A_



100.0 24
PDB header:dna binding protein
Chain: A: PDB Molecule:crispr-associated protein, csm2 family;
PDBTitle: crystal structure of thermotoga maritima csm2
4c6musB_



100.0 16
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:uncharacterized protein csm2;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
5d3cr5x1



79.1 11
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
6c2rgiA_



78.8 13
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a2;
PDBTitle: crystal structure of ca2+-free s100a2 at 1.6 a resolution
7d1qlka_



75.4 16
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
8c3jq3A_



66.1 19
PDB header:transferase
Chain: A: PDB Molecule:lombricine kinase;
PDBTitle: crystal structure of lombricine kinase, complexed with substrate adp
9c2kaxA_



59.9 14
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a5;
PDBTitle: solution structure and dynamics of s100a5 in the apo and2 ca2+ -bound states
10c5ady6_



51.8 25
PDB header:ribosome
Chain: 6: PDB Molecule:gtpase hflx;
PDBTitle: cryo-em structures of the 50s ribosome subunit bound with hflx
11d1zfsa1



45.1 16
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
12d1qlsa_



40.2 12
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
13d1ksoa_



38.6 11
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
14d1q3ma_



35.6 38
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
15c1qk1H_



31.9 11
PDB header:transferase (creatine kinase)
Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial;
PDBTitle: crystal structure of human ubiquitous mitochondrial creatine kinase
16c5hydA_



29.7 20
PDB header:protein binding
Chain: A: PDB Molecule:protein s100-z;
PDBTitle: crystal structure of calcium-free human s100z
17c1rl9A_



29.0 15
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex
18d1dc1a_



26.4 13
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BsobI
19d1q8ha_



24.2 29
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
20c1q8hA_



24.2 29
PDB header:metal binding protein
Chain: A: PDB Molecule:osteocalcin;
PDBTitle: crystal structure of porcine osteocalcin
21d3c1va1



not modelled 23.9 13
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
22c3zpnD_



not modelled 23.6 36
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: structure of psb28
23c3pf6C_



not modelled 21.7 27
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein pp-luz7_gp033;
PDBTitle: the structure of uncharacterized protein pp-luz7_gp033 from2 pseudomonas phage luz7.
24c2l0vB_



not modelled 21.5 11
PDB header:metal binding protein
Chain: B: PDB Molecule:protein s100-a16;
PDBTitle: solution structure of calcium(ii) bound s100a16
25c2kvoA_



not modelled 20.9 43
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
26c3ju6A_



not modelled 19.0 11
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of dimeric arginine kinase in complex with2 amppnp and arginine
27d1a4pa_



not modelled 19.0 18
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
28d1m15a1



not modelled 18.0 9
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
29d1gs0a1



not modelled 16.6 9
Fold:Domain of poly(ADP-ribose) polymerase
Superfamily:Domain of poly(ADP-ribose) polymerase
Family:Domain of poly(ADP-ribose) polymerase
30c4wo8A_



not modelled 15.7 26
PDB header:transferase
Chain: A: PDB Molecule:taurocyamine kinase;
PDBTitle: the substrate-free duplicated taurocyamine kinase from schistosoma2 mansoni
31c1wn4A_



not modelled 15.6 63
PDB header:plant protein
Chain: A: PDB Molecule:vontr protein;
PDBTitle: nmr structure of vontr
32c1vzmB_



not modelled 15.1 40
PDB header:calcium-binding protein
Chain: B: PDB Molecule:osteocalcin;
PDBTitle: osteocalcin from fish argyrosomus regius
33c3bpjD_



not modelled 14.6 17
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
34c2dlrA_



not modelled 14.6 21
PDB header:signaling protein
Chain: A: PDB Molecule:regulator of g-protein signaling 10;
PDBTitle: solution structure of the rgs domain of human regulator of2 g-protein signaling 10
35c1i0eD_



not modelled 14.0 11
PDB header:transferase
Chain: D: PDB Molecule:creatine kinase,m chain;
PDBTitle: crystal structure of creatine kinase from human muscle
36c4rf9A_



not modelled 13.9 10
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of double-domain arginine kinase from anthopleura2 japonicas in complex with l-arginine and atpgs
37c1gs0B_



not modelled 13.7 13
PDB header:transferase
Chain: B: PDB Molecule:poly (adp-ribose) polymerase-2;
PDBTitle: crystal structure of the catalytic fragment of murine poly2 (adp-ribose) polymerase-2
38d1j55a_



not modelled 13.6 27
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
39c4drwC_



not modelled 13.6 18
PDB header:exocytosis/protein binding
Chain: C: PDB Molecule:protein s100-a10/annexin a2 chimeric protein;
PDBTitle: crystal structure of the ternary complex between s100a10, an annexin2 a2 n-terminal peptide and an ahnak peptide
40c2y5iF_



not modelled 13.5 16
PDB header:metal-binding protein
Chain: F: PDB Molecule:s100 calcium binding protein z;
PDBTitle: s100z from zebrafish in complex with calcium
41d1fs1b1



not modelled 12.9 14
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
42d1ztda1



not modelled 12.7 56
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:PF0609-like
43d1nexa1



not modelled 12.1 7
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
44c3l2eB_



not modelled 12.0 0
PDB header:transferase
Chain: B: PDB Molecule:glycocyamine kinase beta chain;
PDBTitle: glycocyamine kinase, alpha-beta heterodimer from marine worm2 namalycastis sp.
45d1t6sa2



not modelled 11.1 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ScpB/YpuH-like
46c2x0lB_



not modelled 11.1 17
PDB header:transcription
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: crystal structure of a neuro-specific splicing variant of2 human histone lysine demethylase lsd1.
47c2iw5B_



not modelled 11.1 17
PDB header:oxidoreductase/transcription regulator
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: structural basis for corest-dependent demethylation of nucleosomes by2 the human lsd1 histone demethylase
48c2v1dB_



not modelled 11.1 17
PDB header:oxidoreductase/repressor
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
49c2xajB_



not modelled 11.1 17
PDB header:transcription
Chain: B: PDB Molecule:rest corepressor 1;
PDBTitle: crystal structure of lsd1-corest in complex with (-)-trans-2 2-phenylcyclopropyl-1-amine
50d2oc5a1



not modelled 11.0 20
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:PMT1231-like
51d1k8ua_



not modelled 11.0 24
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
52d1u6ra1



not modelled 10.8 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
53d1fs2b1



not modelled 10.8 13
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
54d1efya1



not modelled 10.8 12
Fold:Domain of poly(ADP-ribose) polymerase
Superfamily:Domain of poly(ADP-ribose) polymerase
Family:Domain of poly(ADP-ribose) polymerase
55d2ovra1



not modelled 10.7 13
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
56d2rd6a1



not modelled 10.7 14
Fold:Domain of poly(ADP-ribose) polymerase
Superfamily:Domain of poly(ADP-ribose) polymerase
Family:Domain of poly(ADP-ribose) polymerase
57d2dt5a1



not modelled 10.5 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional repressor Rex, N-terminal domain
58c1q68A_



not modelled 10.5 44
PDB header:membrane protein/transferase
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments
59d1vrpa1



not modelled 10.2 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
60d1crka1



not modelled 10.0 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
61c2a8vA_



not modelled 9.7 22
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
62c4ggfT_



not modelled 9.5 14
PDB header:antimicrobial protein
Chain: T: PDB Molecule:protein s100-a9;
PDBTitle: crystal structure of mn2+ bound calprotectin
63d1i0ea1



not modelled 9.4 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
64d2qpva1



not modelled 9.4 23
Fold:TBP-like
Superfamily:Bet v1-like
Family:Atu1531-like
65c2paxA_



not modelled 9.0 10
PDB header:transferase
Chain: A: PDB Molecule:poly(adp-ribose) polymerase;
PDBTitle: the catalytic fragment of poly(adp-ribose) polymerase2 complexed with 4-amino-1,8-naphthalimide
66d1qh4a1



not modelled 9.0 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
67d1g0wa1



not modelled 8.4 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
68c4dqyF_



not modelled 8.3 13
PDB header:transferase/dna
Chain: F: PDB Molecule:poly [adp-ribose] polymerase 1;
PDBTitle: structure of human parp-1 bound to a dna double strand break
69c2lpyA_



not modelled 8.1 13
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein p10;
PDBTitle: solution structure of the m-pmv myristoylated matrix protein
70d1a62a2



not modelled 8.1 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71d1a03a_



not modelled 8.1 16
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
72d1tw9a1



not modelled 8.0 8
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
73c3zpv0_



not modelled 8.0 25
PDB header:transcription
Chain: 0: PDB Molecule:protein bcl9 homolog;
PDB Fragment:phd domain, residues 747-804; PDBTitle: crystal structure of drosophila pygo phd finger in complex2 with legless hd1 domain
74c2ptmA_



not modelled 7.8 3
PDB header:transport protein
Chain: A: PDB Molecule:hyperpolarization-activated (ih) channel;
PDBTitle: structure and rearrangements in the carboxy-terminal region of spih2 channels
75d1psra_



not modelled 7.5 9
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
76c2khnA_



not modelled 7.3 18
PDB header:signaling protein
Chain: A: PDB Molecule:intersectin-1;
PDBTitle: nmr solution structure of the eh 1 domain from human2 intersectin-1 protein. northeast structural genomics3 consortium target hr3646e.
77d1qk1a1



not modelled 7.1 5
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
78c1r6rA_



not modelled 6.9 29
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold
79d1r6ra_



not modelled 6.9 29
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
80c5a48B_



not modelled 6.7 18
PDB header:protein binding
Chain: B: PDB Molecule:maternal effect protein oskar;
PDBTitle: crystal structure of the lotus domain (aa 139-240) of drosophila2 oskar in p65
81c2gslE_



not modelled 6.6 20
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:hypothetical protein;
PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1.
82c4i98C_



not modelled 6.6 50
PDB header:cell cycle
Chain: C: PDB Molecule:segregation and condensation protein b;
PDBTitle: crystal structure of the complex between scpa(residues 1-160)-2 scpb(residues 1-183)
83c5yrqE_



not modelled 6.4 17
PDB header:dna binding protein
Chain: E: PDB Molecule:dna repair protein rad5,dna repair protein rev1;
PDBTitle: crystal structure of rad5 and rev1
84d1z9ha1



not modelled 6.2 12
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
85d1sfkb_



not modelled 6.2 31
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
86c2kluA_



not modelled 6.1 44
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
87c5lxjA_



not modelled 6.0 27
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: solution nmr structure of the x domain of peste des petits ruminants2 phosphoprotein
88c1t6sB_



not modelled 5.9 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum
89c3u0kA_



not modelled 5.7 13
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
90c3w6jC_



not modelled 5.7 50
PDB header:cell cycle
Chain: C: PDB Molecule:scpb;
PDBTitle: crystal structure of scpab core complex
91c4e8iA_



not modelled 5.6 20
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
92d2f76x1



not modelled 5.6 13
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:Mason-Pfizer monkey virus matrix protein
93c3bn8A_



not modelled 5.4 7
PDB header:transport protein
Chain: A: PDB Molecule:putative sterol carrier protein 2;
PDBTitle: crystal structure of a putative sterol carrier protein type 2 (af1534)2 from archaeoglobus fulgidus dsm 4304 at 2.11 a resolution
94d1mrza2



not modelled 5.4 20
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
95d1sfka_



not modelled 5.4 27
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
96c1rh5C_



not modelled 5.4 30
PDB header:protein transport
Chain: C: PDB Molecule:secbeta;
PDBTitle: the structure of a protein conducting channel
97d1rh5c_



not modelled 5.4 30
Fold:Single transmembrane helix
Superfamily:Sec-beta subunit
Family:Sec-beta subunit
98c4pcwD_



not modelled 5.4 17
PDB header:metal binding protein
Chain: D: PDB Molecule:filaggrin;
PDBTitle: crystal structure of the n-terminal domain of human profilaggrin at2 2.2 a resolution
99c5ow2A_



not modelled 5.2 27
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: japanese encephalitis virus capsid protein

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