Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2826c_(-)_3133719_3134603
DateWed Aug 7 12:50:49 BST 2019
Unique Job IDd6cad19b2ed86d2e
SequenceVAGLTRALVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.489 Y:38.913 Z:43.863
Model (left) based on template c4ok0B_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
Confidence and coverage
Confidence: 99.5% Coverage: 52%
154 residues ( 52% of your sequence) have been modelled with 99.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ok0B_
99.5 21
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
2d1h9aa2
54.2 48
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
3d1qkia2
42.8 43
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
4c1h9aA_
42.7 48
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
5c4e9iB_
40.8 43
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
6c5xw4A_
39.6 24
PDB header:cell cycle
Chain: A: PDB Molecule:tyrosine-protein phosphatase cdc14;
PDBTitle: crystal structure of budding yeast cdc14p (wild type) in the apo state
7c4lgvA_
38.5 52
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
8c2bhlB_
37.7 43
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
9c1qkiE_
37.0 43
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
10c4dzdA_
36.7 45
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ygch;
PDBTitle: crystal structure of the crispr-associated protein cas6e from2 escherichia coli str. k-12
11d1wj9a2
35.3 45
Fold:Ferredoxin-like
Superfamily:CRISPR-associated protein
Family:CRISPR-associated protein
12c3qrqA_
33.7 45
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:putative uncharacterized protein tthb192;
PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex
13c1wj9A_
32.6 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:crispr-associated protein;
PDBTitle: crystal structure of a crispr-associated protein from2 thermus thermophilus
14c5u0aA_
30.3 43
PDB header:immune system
Chain: A: PDB Molecule:crispr-associated protein, cse3 family;
PDBTitle: crispr rna-guided surveillance complex
15d1fpza_
27.1 24
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
16c1fpzF_
21.5 24
PDB header:hydrolase
Chain: F: PDB Molecule:cyclin-dependent kinase inhibitor 3;
PDBTitle: crystal structure analysis of kinase associated phosphatase (kap) with2 a substitution of the catalytic site cysteine (cys140) to a serine
17c4nyhB_
18.7 30
PDB header:hydrolase
Chain: B: PDB Molecule:rna/rnp complex-1-interacting phosphatase;
PDBTitle: orthorhombic crystal form of pir1 dual specificity phosphatase core
18c1yn9B_
15.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:polynucleotide 5'-phosphatase;
PDBTitle: crystal structure of baculovirus rna 5'-phosphatase2 complexed with phosphate
19c5z5bA_
12.3 32
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase;
PDBTitle: crystal structure of tk-ptp in the g95a mutant form
20d1j2oa2
10.8 73
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
21c2c46B_
not modelled 10.1 23
PDB header:transferase
Chain: B: PDB Molecule:mrna capping enzyme;
PDBTitle: crystal structure of the human rna guanylyltransferase and 5'-2 phosphatase
22c4ps2A_
not modelled 9.5 36
PDB header:contractile protein
Chain: A: PDB Molecule:putative type vi secretion protein;
PDBTitle: structure of the c-terminal fragment (87-165) of e.coli eaec tssb2 molecule
23d1dgsa3
not modelled 9.1 45
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:Adenylation domain of NAD+-dependent DNA ligase
24c2ltuA_
not modelled 9.1 53
PDB header:transferase
Chain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-2;
PDBTitle: solution structure of autoinhibitory domain of human amp-activated2 protein kinase catalytic subunit
25c6bmnA_
not modelled 8.9 36
PDB header:transferase
Chain: A: PDB Molecule:human dhhc20 palmitoyltransferase;
PDBTitle: structure of human dhhc20 palmitoyltransferase, space group p63
26c1dvpA_
not modelled 8.8 26
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
27c5lo2A_
not modelled 8.7 45
PDB header:structural protein
Chain: A: PDB Molecule:ppatyr;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
28c3ld0Q_
not modelled 8.5 50
PDB header:gene regulation
Chain: Q: PDB Molecule:inhibitor of trap, regulated by t-box (trp) sequence rtpa;
PDBTitle: crystal structure of b.licheniformis anti-trap protein, an antagonist2 of trap-rna interactions
29c1yx5A_
not modelled 8.0 46
PDB header:hydrolase
Chain: A: PDB Molecule:26s proteasome non-atpase regulatory subunit 4;
PDBTitle: solution structure of s5a uim-1/ubiquitin complex
30d1r7aa1
not modelled 7.9 70
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
31c1dgsB_
not modelled 7.7 45
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
32c2ly8A_
not modelled 7.2 24
PDB header:chaperone
Chain: A: PDB Molecule:budding yeast chaperone scm3;
PDBTitle: the budding yeast chaperone scm3 recognizes the partially unfolded2 dimer of the centromere-specific cse4/h4 histone variant
33c5o60P_
not modelled 6.8 40
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
34c3j3vO_
not modelled 6.6 47
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l18;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
35d2oa5a1
not modelled 6.4 35
Fold:BLRF2-like
Superfamily:BLRF2-like
Family:BLRF2-like
36c3bboQ_
not modelled 6.3 47
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l18;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
37c5lo4A_
not modelled 6.2 40
PDB header:structural protein
Chain: A: PDB Molecule:ppa-ch3;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
38c6eonA_
not modelled 5.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: galactanase bt0290
39d1d5ra2
not modelled 5.7 24
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
40d1cixa_
not modelled 5.7 71
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
41c1cixA_
not modelled 5.7 71
PDB header:antimicrobial peptide
Chain: A: PDB Molecule:protein (tachystatin a);
PDBTitle: three-dimensional structure of antimicrobial peptide2 tachystatin a isolated from horseshoe crab
42d1elka_
not modelled 5.6 26
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
43d2r7da1
not modelled 5.5 73
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
44c6mv5P_
not modelled 5.3 44
PDB header:immune system
Chain: P: PDB Molecule:proprotein convertase subtilisin/kexin type 9;
PDBTitle: anti-pcsk9 fab 6e2 bound to the n-terminal peptide from pcsk9 (e32k)
45c5j9hA_
not modelled 5.2 29
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: crystal structure of glycoprotein c from puumala virus in the post-2 fusion conformation (ph 8.0)
46c4a1sE_
not modelled 5.2 100
PDB header:cell cycle
Chain: E: PDB Molecule:re60102p;
PDBTitle: crystallographic structure of the pins:insc complex
47c1sseA_
not modelled 5.1 43
PDB header:transcription activator
Chain: A: PDB Molecule:ap-1 like transcription factor yap1;
PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain
48c2bc4C_
not modelled 5.1 31
PDB header:immune system
Chain: C: PDB Molecule:hla class ii histocompatibility antigen, dm alpha chain;
PDBTitle: crystal structure of hla-dm

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