Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2828A_(RVBD2828A)_3136340_3136609
DateWed Aug 7 12:50:49 BST 2019
Unique Job ID230693603fac135c
SequenceMCRNITELRG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.420 Y:32.871 Z:33.573
Model (left) based on template c5vsoA_
Top template information
PDB header:chaperone
Chain: A: PDB Molecule:yeast dnaj protein 1;
PDBTitle: nmr structure of ydj1 j-domain, a cytosolic hsp40 from saccharomyces2 cerevisiae
Confidence and coverage
Confidence: 49.9% Coverage: 55%
49 residues ( 55% of your sequence) have been modelled with 49.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vsoA_
49.9 37
PDB header:chaperone
Chain: A: PDB Molecule:yeast dnaj protein 1;
PDBTitle: nmr structure of ydj1 j-domain, a cytosolic hsp40 from saccharomyces2 cerevisiae
2d5pnta_
49.6 16
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
3c2ys8A_
46.8 21
PDB header:protein binding
Chain: A: PDB Molecule:rab-related gtp-binding protein rabj;
PDBTitle: solution structure of the dnaj-like domain from human ras-2 associated protein rap1
4c4lrqC_
45.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of a low molecular weight phosphotyrosine2 phosphatase from vibrio choleraeo395
5d1hdja_
43.7 20
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
6c3ol4B_
42.6 28
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
7c2fekA_
41.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
8d1dg9a_
40.7 16
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
9c2wmyH_
39.2 22
PDB header:hydrolase
Chain: H: PDB Molecule:putative acid phosphatase wzb;
PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate.
10c2qsaA_
39.1 15
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog dnj-2;
PDBTitle: crystal structure of j-domain of dnaj homolog dnj-2 precursor from2 c.elegans.
11c5z3mB_
38.0 15
PDB header:hydrolase
Chain: B: PDB Molecule:phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of low molecular weight phosphotyrosine phosphatase2 (vclmwptp-2) from vibrio choleraeo395
12c2l6lA_
37.3 17
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 24;
PDBTitle: solution structure of human j-protein co-chaperone, dph4
13c2dn9A_
35.1 19
PDB header:apoptosis, chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily a member 3;
PDBTitle: solution structure of j-domain from the dnaj homolog, human2 tid1 protein
14c2ctrA_
34.5 21
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 9;
PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 9
15c2x9qA_
34.3 18
PDB header:ligase
Chain: A: PDB Molecule:cyclodipeptide synthetase;
PDBTitle: structure of the mycobacterium tuberculosis protein, rv2275,2 demonstrates that cyclodipeptide synthetases are related3 to type i trna-synthetases.
16d1y1la_
31.0 17
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
17c2l18A_
30.3 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: an arsenate reductase in the phosphate binding state
18c3f4yF_
27.1 32
PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
19c1zggA_
27.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
20c4etiA_
27.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ywle;
PDBTitle: crystal structure of ywle from bacillus subtilis
21c2kvcA_
not modelled 27.1 28
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of the mycobacterium tuberculosis protein rv0543c,2 a member of the duf3349 superfamily. seattle structural genomics3 center for infectious disease target mytud.17112.a
22c2yy0D_
not modelled 24.6 15
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
23c2yuaA_
not modelled 24.4 22
PDB header:chaperone
Chain: A: PDB Molecule:williams-beuren syndrome chromosome region 18
PDBTitle: solution structure of the dnaj domain from human williams-2 beuren syndrome chromosome region 18 protein
24c4d74A_
not modelled 24.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine-phosphatase amsi;
PDBTitle: 1.57 a crystal structure of erwinia amylovora tyrosine phosphatase2 amsi
25c1u2pA_
not modelled 24.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution
26c4j7zC_
not modelled 23.5 20
PDB header:chaperone
Chain: C: PDB Molecule:chaperone protein dnaj 2;
PDBTitle: thermus thermophilus dnaj j- and g/f-domains
27d1wjwa_
not modelled 22.1 24
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
28d1iura_
not modelled 21.3 12
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
29c4picA_
not modelled 21.2 28
PDB header:hydrolase
Chain: A: PDB Molecule:arginine phosphatase ywle;
PDBTitle: ywle arginine phosphatase from geobacillus stearothermophilus
30d1p8aa_
not modelled 20.4 16
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
31c4egsB_
not modelled 18.5 15
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase rpib;
PDBTitle: crystal structure analysis of low molecular weight protein tyrosine2 phosphatase from t. tengcongensis
32d1d1qa_
not modelled 18.3 21
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
33c2ctpA_
not modelled 18.2 18
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 12;
PDBTitle: solution structure of j-domain from human dnaj subfamily b2 menber 12
34c2m0nA_
not modelled 17.7 23
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
35c2cugA_
not modelled 16.6 13
PDB header:chaperone
Chain: A: PDB Molecule:mkiaa0962 protein;
PDBTitle: solution structure of the j domain of the pseudo dnaj2 protein, mouse hypothetical mkiaa0962
36c5j1bB_
not modelled 16.3 29
PDB header:signaling protein
Chain: B: PDB Molecule:cell wall assembly regulator smi1;
PDBTitle: structure of the core domaine of knr4, an intrinsically disordered2 protein from saccharomyces cerevisiae - wt.
37c5xdhD_
not modelled 15.7 17
PDB header:electron transport
Chain: D: PDB Molecule:putative cytochrome c;
PDBTitle: his/dopa ligated cytochrome c from an anammox organism ksu-1
38c1x4qA_
not modelled 15.3 27
PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3)
39c2bsjB_
not modelled 15.2 32
PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein syct;
PDBTitle: native crystal structure of the type iii secretion chaperone syct from2 yersinia enterocolitica
40c2cosA_
not modelled 14.1 43
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine protein kinase lats2;
PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2)
41c2o37A_
not modelled 14.1 21
PDB header:chaperone
Chain: A: PDB Molecule:protein sis1;
PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from saccharomyces2 cerevisiae.
42c2ctqA_
not modelled 13.3 14
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 12;
PDBTitle: solution structure of j-domain from human dnaj subfamily c2 menber 12
43c2ochA_
not modelled 12.9 21
PDB header:chaperone
Chain: A: PDB Molecule:hypothetical protein dnj-12;
PDBTitle: j-domain of dnj-12 from caenorhabditis elegans
44c2lkyA_
not modelled 12.9 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of msmeg_1053, the second duf3349 annotated protein2 in the genome of mycobacterium smegmatis, seattle structural genomics3 center for infectious disease target mysma.17112.b
45c2ctwA_
not modelled 12.6 26
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 5;
PDBTitle: solution structure of j-domain from mouse dnaj subfamily c2 menber 5
46c5y88T_
not modelled 11.9 18
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor cwc23;
PDBTitle: cryo-em structure of the intron-lariat spliceosome ready for2 disassembly from s.cerevisiae at 3.5 angstrom
47c2lgwA_
not modelled 11.7 20
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 2;
PDBTitle: solution structure of the j domain of hsj1a
48c6ez3C_
not modelled 11.7 13
PDB header:rna binding protein
Chain: C: PDB Molecule:cyclo(l-leucyl-l-leucyl) synthase;
PDBTitle: structure of cdps from staphylococcus haemolyticus
49c3jviA_
not modelled 11.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
50c2mqaA_
not modelled 10.5 26
PDB header:structural protein
Chain: A: PDB Molecule:minor ampullate fibroin 1;
PDBTitle: 3d structure of rp domain of misp
51c2l2lB_
not modelled 10.2 44
PDB header:transferase
Chain: B: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha
52c2lxcB_
not modelled 9.8 22
PDB header:protein binding/protein binding
Chain: B: PDB Molecule:small glutamine-rich tetratricopeptide repeat-containing
PDBTitle: solution structure of the complex between the sgt2 homodimerization2 domain and the get5 ubl domain
53c6gcsG_
not modelled 9.7 22
PDB header:oxidoreductase
Chain: G: PDB Molecule:30-kda protein (nugm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
54c3rh0A_
not modelled 9.6 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
55c2dmxA_
not modelled 9.5 25
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily b member 8;
PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8
56c2kqxA_
not modelled 9.1 21
PDB header:chaperone binding protein
Chain: A: PDB Molecule:curved dna-binding protein;
PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa
57c3ci9B_
not modelled 8.8 22
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
58d1wjza_
not modelled 8.2 8
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
59c5lkdB_
not modelled 7.9 24
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase omega-like 2;
PDBTitle: crystal structure of the xi glutathione transferase ecm4 from2 saccharomyces cerevisiae in complex with glutathione
60d1svdm1
not modelled 7.6 18
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
61c1zzpA_
not modelled 6.9 12
PDB header:transferase
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1;
PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl
62d1rbli_
not modelled 6.9 23
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
63c2lkzA_
not modelled 6.7 31
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure of the second rrm domain of rbm5
64c3hhcB_
not modelled 6.6 16
PDB header:cytokine
Chain: B: PDB Molecule:interleukin-28b;
PDBTitle: interferon-lambda is functionally an interferon but structurally2 related to the il-10 family
65c2ki2A_
not modelled 6.5 17
PDB header:rna binding protein/ss-dna binding prote
Chain: A: PDB Molecule:ss-dna binding protein 12rnp2;
PDBTitle: solution structure of ss-dna binding protein 12rnp22 precursor, hp0827(o25501_helpy) form helicobacter pylori
66d1ztda1
not modelled 6.4 28
Fold:RNase III domain-like
Superfamily:RNase III domain-like
Family:PF0609-like
67c5g2fB_
not modelled 6.1 55
PDB header:unknown function
Chain: B: PDB Molecule:type-iv like pilin ttha1222;
PDBTitle: type iv-like competence pilin ttha1222 from thermus2 thermophilus
68c2jx0A_
not modelled 6.0 22
PDB header:cell adhesion, signaling protein
Chain: A: PDB Molecule:arf gtpase-activating protein git1;
PDBTitle: the paxillin-binding domain (pbd) of g protein coupled2 receptor (gpcr)-kinase (grk) interacting protein 1 (git1)
69d2acva1
not modelled 5.8 17
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
70c1xhoB_
not modelled 5.7 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: chorismate mutase from clostridium thermocellum cth-682
71d1xhoa_
not modelled 5.7 33
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
72c3d5pB_
not modelled 5.6 13
PDB header:gene regulation
Chain: B: PDB Molecule:putative glucan synthesis regulator of smi1/knr4 family;
PDBTitle: crystal structure of a putative glucan synthesis regulator of2 smi1/knr4 family (bf1740) from bacteroides fragilis nctc 9343 at 1.453 a resolution
73d1fnja_
not modelled 5.4 27
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
74c2ytcA_
not modelled 5.4 28
PDB header:transcription
Chain: A: PDB Molecule:pre-mrna-splicing factor rbm22;
PDBTitle: solution structure of rna binding domain in pre-mrna-2 splicing factor rbm22
75c4g6uA_
not modelled 5.3 27
PDB header:toxin
Chain: A: PDB Molecule:ec869 cdia-ct;
PDBTitle: cdia-ct/cdii toxin and immunity complex from escherichia coli

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite