Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2829c_(-)_3136630_3137022
DateWed Aug 7 12:50:49 BST 2019
Unique Job ID542e7c4ca6490861
SequenceMTTVLLDSHV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.970 Y:35.400 Z:46.456
Model (left) based on template c3zvkC_
Top template information
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
Confidence and coverage
Confidence: 99.9% Coverage: 97%
126 residues ( 97% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3zvkC_



99.9 13
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
2c6nklA_



99.9 14
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
3c3tndC_



99.9 16
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
4c5l6mC_



99.9 20
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
5d2h1ca1



99.9 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c4xgrG_



99.9 16
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
7c3h87B_



99.8 16
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
8c2fe1A_



99.8 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
9d2fe1a1



99.8 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
10c3dboB_



99.8 17
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
11c6a7vG_



99.8 14
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
12c5wzfB_



99.8 11
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
13c5sv2A_



99.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
14d1v96a1



99.8 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c4chgC_



99.8 13
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
16d1y82a1



99.8 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c5x3tD_



99.8 16
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
18d1v8pa_



99.3 19
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c1v8pK_



99.3 19
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
20d1w8ia_



99.1 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
21c3i8oA_



not modelled 98.8 14
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
22c3ix7A_



not modelled 98.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
23c5ywwA_



not modelled 98.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
24d1o4wa_



not modelled 98.4 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25c5f4hF_



not modelled 98.4 17
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
26c2lcqA_



not modelled 97.7 14
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c5yz4A_



not modelled 97.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
28c5jpqd_



not modelled 97.4 21
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
29c2hwwC_



not modelled 96.9 22
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
30c4mj7B_



not modelled 95.7 13
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c3v33A_



not modelled 81.3 30
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
32c3v32B_



not modelled 80.2 35
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
33c2hwyB_



not modelled 70.0 7
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
34d1tfra2



not modelled 56.2 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
35c6g5iy_



not modelled 55.8 16
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
36d1a77a2



not modelled 41.0 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37c4hecB_



not modelled 35.5 25
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
38d1cmwa2



not modelled 34.1 39
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
39c3q8lA_



not modelled 27.3 14
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: crystal structure of human flap endonuclease fen1 (wt) in complex with2 substrate 5'-flap dna, sm3+, and k+
40c3zddA_



not modelled 23.8 14
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
41c2izoA_



not modelled 23.5 11
PDB header:hydrolase
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: structure of an archaeal pcna1-pcna2-fen1 complex
42d1rxwa2



not modelled 22.1 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
43d1ul1x2



not modelled 21.9 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
44c2ihnA_



not modelled 20.0 17
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
45c3qeaZ_



not modelled 19.4 19
PDB header:hydrolase/dna
Chain: Z: PDB Molecule:exonuclease 1;
PDBTitle: crystal structure of human exonuclease 1 exo1 (wt) in complex with dna2 (complex ii)
46d1mc8a2



not modelled 17.0 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
47c1b43A_



not modelled 14.6 14
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
48c1jqsB_



not modelled 14.3 11
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
49c2mdtA_



not modelled 14.1 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
50c1rxvA_



not modelled 11.5 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:flap structure-specific endonuclease;
PDBTitle: crystal structure of a. fulgidus fen-1 bound to dna
51c1ut8B_



not modelled 10.9 16
PDB header:hydrolase
Chain: B: PDB Molecule:exodeoxyribonuclease;
PDBTitle: divalent metal ions (zinc) bound to t5 5'-exonuclease
52c4g25A_



not modelled 9.9 32
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at2g32230,
PDBTitle: crystal structure of proteinaceous rnase p 1 (prorp1) from a.2 thaliana, semet substituted form with sr
53c1a77A_



not modelled 9.0 20
PDB header:5'-3' exo/endo nuclease
Chain: A: PDB Molecule:flap endonuclease-1 protein;
PDBTitle: flap endonuclease-1 from methanococcus jannaschii
54d1xo1a2



not modelled 8.4 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
55c5dizB_



not modelled 7.4 30
PDB header:hydrolase
Chain: B: PDB Molecule:proteinaceous rnase p 2;
PDBTitle: crystal structure of nuclear proteinaceous rnase p 2 (prorp2) from a.2 thaliana
56c4wa8A_



not modelled 6.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:flap endonuclease 1;
PDBTitle: methanopyrus kandleri fen-1 nuclease
57c5br9C_



not modelled 6.7 56
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein with similarity to2 peptidase yeaz from pseudomonas aeruginosa
58c4pn7A_



not modelled 6.4 15
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of the tfiih p34 n-terminal domain
59c2hsnA_



not modelled 5.4 14
PDB header:ligase/rna binding protein
Chain: A: PDB Molecule:methionyl-trna synthetase, cytoplasmic;
PDBTitle: structural basis of yeast aminoacyl-trna synthetase complex2 formation revealed by crystal structures of two binary sub-3 complexes

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