Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2830c_(-)_3137019_3137234
DateWed Aug 7 12:50:49 BST 2019
Unique Job ID280a4ba12c21c065
SequenceMTATEVKAKI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.645 Y:35.770 Z:21.729
Model (left) based on template d2odka1
Top template information
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
Confidence and coverage
Confidence: 99.2% Coverage: 63%
45 residues ( 63% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
64 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2odka1



99.2 20
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
2c2odkD_



99.2 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
3c3hryA_



99.0 31
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_



98.8 30
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1



98.4 14
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_



98.3 32
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1



98.0 14
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_



97.7 23
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_



97.7 23
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_



90.0 17
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_



70.8 20
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1



54.7 18
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d2ns0a1



21.6 45
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
14c3dmlA_



13.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the periplasmic thioredoxin soxs from paracoccus2 pantotrophus (reduced form)
15d2hq7a1



13.2 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
16d1ogda_



12.6 15
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
17d1bifa2



11.9 11
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
18d1k6ma2



10.6 11
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
19c4ewvB_



9.4 35
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
20d1x6va1



9.4 20
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
21d1tipa_



not modelled 9.1 11
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
22c3e7nB_



not modelled 8.4 13
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
23c6gwjD_



not modelled 8.0 28
PDB header:rna binding protein
Chain: D: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: protein complex
24c3p13B_



not modelled 7.5 13
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
25c2wcvI_



not modelled 7.1 25
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
26c5lddA_



not modelled 7.1 10
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
27c1snaA_



not modelled 7.1 40
PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
28c1snaC_



not modelled 7.1 40
PDB header:de novo protein
Chain: C: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
29c1snaD_



not modelled 7.1 40
PDB header:de novo protein
Chain: D: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
30c1snaB_



not modelled 7.1 40
PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
31c4heoA_



not modelled 7.0 17
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
32c6nklD_



not modelled 6.9 8
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
33c3ve5D_



not modelled 6.8 33
PDB header:recombination
Chain: D: PDB Molecule:recombination protein recr;
PDBTitle: structure of recombination mediator protein recr16-196 deletion mutant
34d1uwka_



not modelled 6.7 17
Fold:Urocanase
Superfamily:Urocanase
Family:Urocanase
35c2zqeA_



not modelled 6.7 27
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
36c4nhyC_



not modelled 6.5 19
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: C: PDB Molecule:2-oxoglutarate and iron-dependent oxygenase domain-
PDBTitle: crystal structure of human ogfod1, 2-oxoglutarate and iron-dependent2 oxygenase domain containing 1, in complex with pyridine-2,4-3 dicarboxylic acid (2,4-pdca)
37c6c5rF_



not modelled 6.3 27
PDB header:cytosolic protein
Chain: F: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the soluble domain of the mitochondrial calcium2 uniporter
38d1xbra_



not modelled 6.3 45
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:T-box
39d1pdoa_



not modelled 6.2 13
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
40c3v62F_



not modelled 6.0 42
PDB header:protein binding/dna binding protein
Chain: F: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
41c3v62C_



not modelled 6.0 42
PDB header:protein binding/dna binding protein
Chain: C: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
42d1vm0a_



not modelled 5.9 20
Fold:IF3-like
Superfamily:AlbA-like
Family:Hypothetical protein At2g34160
43c6qj1A_



not modelled 5.8 13
PDB header:cell cycle
Chain: A: PDB Molecule:structural maintenance of chromosomes protein,structural
PDBTitle: crystal structure of the c. thermophilum condensin smc2 atpase head2 (crystal from i)
44c3iprC_



not modelled 5.6 17
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
45c1gk7A_



not modelled 5.5 18
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)

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