Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2834c_(ugpE)_3140497_3141324
DateWed Aug 7 12:50:50 BST 2019
Unique Job ID8721acdbd2cf0f15
SequenceVTPDRLRSSV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:78.433 Y:39.340 Z:71.210
Model (left) based on template c4tqvJ_
Top template information
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
Confidence and coverage
Confidence:100.0% Coverage: 96%
265 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4tqvJ_



100.0 25
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
2d2r6gg1



100.0 29
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
3c3fh6F_



100.0 15
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
4c4tqvI_



100.0 17
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
5c2r6gF_



100.0 18
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
6d2onkc1



100.0 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7c2onkC_



100.0 17
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
8d2r6gf2



100.0 19
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9d3d31c1



100.0 20
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c3d31D_



100.0 20
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
11c4ymuC_



100.0 13
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.9 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



76.9 14
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14d2r6gf1



70.4 11
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
15c2m8gX_



46.7 19
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
16c1umqA_



43.7 13
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
17d1umqa_



43.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
18c4l5eA_



43.5 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
19d1ntca_



41.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
20d1fipa_



31.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
21c3e7lD_



not modelled 26.5 10
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
22d1etob_



not modelled 26.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23d1etxa_



not modelled 25.0 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24c2hx6A_



not modelled 24.6 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
25c2jwaA_



not modelled 22.7 21
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
26c2ks1A_



not modelled 22.7 21
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
27d1g2ha_



not modelled 16.1 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
28c1g2hA_



not modelled 16.1 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
29c5m7nA_



not modelled 14.3 13
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
30c5ir6A_



not modelled 12.3 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
31c1ojlD_



not modelled 11.4 23
PDB header:response regulator
Chain: D: PDB Molecule:transcriptional regulatory protein zrar;
PDBTitle: crystal structure of a sigma54-activator suggests the mechanism for2 the conformational switch necessary for sigma54 binding
32c1bctA_



not modelled 9.8 21
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
33c4huqS_



not modelled 9.6 11
PDB header:hydrolase
Chain: S: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a transporter
34c3s1bA_



not modelled 8.6 24
PDB header:signaling protein
Chain: A: PDB Molecule:mini-z;
PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis
35c2cw1A_



not modelled 8.6 27
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
36c2n2aA_



not modelled 7.7 15
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
37c4j2nA_



not modelled 7.1 15
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
38c4j2nB_



not modelled 7.1 15
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
39c2momB_



not modelled 6.9 19
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
40c2momC_



not modelled 6.9 19
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
41c1pyuD_



not modelled 6.9 15
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
42c4qiwT_



not modelled 6.9 50
PDB header:transcription
Chain: T: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
43c1twcF_



not modelled 6.6 43
PDB header:transcription
Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23
PDBTitle: rna polymerase ii complexed with gtp
44d1twff_



not modelled 6.5 43
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6
45c2pmzW_



not modelled 6.3 50
PDB header:translation, transferase
Chain: W: PDB Molecule:dna-directed rna polymerase subunit k;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
46d1cf7a_



not modelled 5.9 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
47c4xtnJ_



not modelled 5.5 7
PDB header:membrane protein
Chain: J: PDB Molecule:sodium pumping rhodopsin;
PDBTitle: crystal structure of the light-driven sodium pump kr2 in the2 pentameric red form, ph 4.9
48c6eyuA_



not modelled 5.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
49d2ns0a1



not modelled 5.3 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
50d1qkla_



not modelled 5.3 43
Fold:RPB6/omega subunit-like
Superfamily:RPB6/omega subunit-like
Family:RPB6

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below