Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2836c_(dinF)_3142319_3143638
DateWed Aug 7 12:50:50 BST 2019
Unique Job ID75a292a9171c2a93
SequenceLSQVGHRAGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.699 Y:46.456 Z:61.510
Model (left) based on template c5y50A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
Confidence and coverage
Confidence:100.0% Coverage: 98%
431 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5y50A_
100.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
2c6idrA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:mate family efflux transporter;
PDBTitle: crystal structure of vibrio cholerae mate transporter vcmn in the bent2 form
3c5xjjA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:multi drug efflux transporter;
PDBTitle: crystal structure of a mate family protein
4c3mkuA_
100.0 21
PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
5c3mkuB_
100.0 21
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
6c4z3pA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:putative drug/sodium antiporter;
PDBTitle: mate transporter clbm in complex with rb+
7c4lz9A_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:bh2163 protein;
PDBTitle: structure of mate multidrug transporter dinf-bh in complex with r6g
8c3vvpA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
9c6fv6A_
100.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:aq128;
PDBTitle: monomer structure of the mate family multidrug resistance transporter2 aq_128 from aquifex aeolicus in the outward-facing state
10c6cc4A_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
11c5t77A_
100.0 9
PDB header:transport protein
Chain: A: PDB Molecule:putative lipid ii flippase murj;
PDBTitle: crystal structure of the mop flippase murj
12c4hunA_
100.0 22
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux protein;
PDBTitle: mate transporter norm-ng in complex with r6g and monobody
13c5aymA_
76.0 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
14c5aynA_
47.1 9
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
15c4iu8A_
44.2 10
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
16c3wdoA_
41.6 11
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
17c5jthB_
28.6 40
PDB header:transferase
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: crystal structure of e67a calmodulin - cam:rm20 complex
18c5jqaB_
28.6 40
PDB header:calcium binding protein/protein binding
Chain: B: PDB Molecule:myosin light chain kinase, smooth muscle;
PDBTitle: cam:rm20 complex
19c1qtxB_
26.3 40
PDB header:signaling protein
Chain: B: PDB Molecule:protein (rs20);
PDBTitle: the 1.65 angstrom structure of calmodulin rs20 peptide2 complex
20c1cdlF_
26.1 40
PDB header:calcium-binding protein
Chain: F: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
21c1cdlE_
not modelled 26.1 40
PDB header:calcium-binding protein
Chain: E: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
22c2o5gB_
not modelled 25.8 40
PDB header:metal binding protein
Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide;
PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex
23c1cdlG_
not modelled 25.0 40
PDB header:calcium-binding protein
Chain: G: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
24c6adqP_
not modelled 16.2 11
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
25d1pw4a_
not modelled 14.6 10
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
26c1cdlH_
not modelled 14.4 44
PDB header:calcium-binding protein
Chain: H: PDB Molecule:calcium/calmodulin-dependent protein kinase type
PDBTitle: target enzyme recognition by calmodulin: 2.4 angstroms2 structure of a calmodulin-peptide complex
27c5njgB_
not modelled 13.8 10
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: part of the structure that could be2 built de novo
28c6e9oA_
not modelled 12.5 8
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
29c5n9yB_
not modelled 11.7 19
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
30c2nzzA_
not modelled 10.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:penetratin conjugated gas (374-394) peptide;
PDBTitle: nmr structure analysis of the penetratin conjugated gas2 (374-394) peptide
31c6j5if_
not modelled 9.1 16
PDB header:membrane protein
Chain: F: PDB Molecule:atp synthase subunit beta;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
32c2k5kA_
not modelled 8.9 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rhr2;
PDBTitle: solution structure of rhr2 from rhodobacter sphaeroides.2 northeast structural genomics consortium
33c4u1eG_
not modelled 8.8 25
PDB header:translation
Chain: G: PDB Molecule:eukaryotic translation initiation factor 3 subunit g;
PDBTitle: crystal structure of the eif3b-ctd/eif3i/eif3g-ntd translation2 initiation complex
34c6hu9o_
not modelled 8.7 17
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:cytochrome c1, heme protein, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
35c3wmmP_
not modelled 8.4 11
PDB header:photosynthesis
Chain: P: PDB Molecule:lh1 beta polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
36c2m7tA_
not modelled 8.0 57
PDB header:protein binding
Chain: A: PDB Molecule:cystine knot protein 2.5d;
PDBTitle: solution nmr structure of engineered cystine knot protein 2.5d
37c6agfB_
not modelled 7.8 6
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
38c4ev6E_
not modelled 7.6 11
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
39c1wrgA_
not modelled 7.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
40c6iz4G_
not modelled 7.4 16
PDB header:membrane protein
Chain: G: PDB Molecule:trimeric intracellular cation channel type b-b;
PDBTitle: crystal structure analysis of tric counter-ion channels in calcium2 release
41c6et5u_
not modelled 7.3 16
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
42d2d5ba1
not modelled 7.1 8
Fold:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Superfamily:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
Family:Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
43c2x9aA_
not modelled 6.8 44
PDB header:viral protein
Chain: A: PDB Molecule:attachment protein g3p;
PDBTitle: crystal structure of g3p from phage if1 in complex with its2 coreceptor, the c-terminal domain of tola
44d1lghb_
not modelled 6.7 13
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
45c2l0gA_
not modelled 6.4 60
PDB header:protein binding
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution nmr structure of ubiquitin-binding motif (ubm2) of human2 polymerase iota
46c2khuA_
not modelled 6.3 60
PDB header:transferase/protein binding
Chain: A: PDB Molecule:immunoglobulin g-binding protein g, dna
PDBTitle: solution structure of the ubiquitin-binding motif of human2 polymerase iota
47c3ipdB_
not modelled 6.1 6
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
48c2bbmB_
not modelled 5.8 33
PDB header:calcium-binding protein
Chain: B: PDB Molecule:myosin light chain kinase;
PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr
49c2lv6B_
not modelled 5.8 33
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:myosin light chain kinase 2, skeletal/cardiac muscle;
PDBTitle: the complex between ca-calmodulin and skeletal muscle myosin light2 chain kinase from combination of nmr and aqueous and contrast-matched3 saxs data
50c2bbnB_
not modelled 5.8 33
PDB header:calcium-binding protein
Chain: B: PDB Molecule:myosin light chain kinase;
PDBTitle: solution structure of a calmodulin-target peptide complex2 by multidimensional nmr
51c1b9uA_
not modelled 5.7 5
PDB header:hydrolase
Chain: A: PDB Molecule:protein (atp synthase);
PDBTitle: membrane domain of the subunit b of the e.coli atp synthase
52c4yczC_
not modelled 5.6 21
PDB header:structural protein
Chain: C: PDB Molecule:nup120;
PDBTitle: y-complex hub (nup85-nup120-nup145c-sec13 complex) from m. thermophila2 (a.k.a. t. heterothallica)
53d1g3pa1
not modelled 5.5 44
Fold:N-terminal domains of the minor coat protein g3p
Superfamily:N-terminal domains of the minor coat protein g3p
Family:N-terminal domains of the minor coat protein g3p
54c2kwuA_
not modelled 5.4 50
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
55c2kogA_
not modelled 5.3 7
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
56d1htaa_
not modelled 5.3 7
Fold:Histone-fold
Superfamily:Histone-fold
Family:Archaeal histone
57c6iz0A_
not modelled 5.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric intracellular cation channel type a;
PDBTitle: crystal structure analysis of a eukaryotic membrane protein
58d1v54c_
not modelled 5.1 12
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
59c2jvwA_
not modelled 5.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of uncharacterized protein q5e7h1 from vibrio2 fischeri. northeast structural genomics target vfr117

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below