Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2837c_(-)_3143645_3144655
DateWed Aug 7 12:50:50 BST 2019
Unique Job ID9e931a1add8c8d9f
SequenceVTTIDPRSEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.786 Y:59.238 Z:43.439
Model (left) based on template c5o1uB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: structure of wildtype t.maritima pde (tm1595) with amp and mn2+
Confidence and coverage
Confidence:100.0% Coverage: 91%
305 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o1uB_
100.0 32
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: structure of wildtype t.maritima pde (tm1595) with amp and mn2+
2c3dmaA_
100.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:exopolyphosphatase-related protein;
PDBTitle: crystal structure of an exopolyphosphatase-related protein from2 bacteroides fragilis. northeast structural genomics target bfr192
3c3devB_
100.0 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:sh1221;
PDBTitle: crystal structure of sh1221 protein from staphylococcus haemolyticus,2 northeast structural genomics consortium target shr87
4c5j21C_
100.0 23
PDB header:hydrolase
Chain: C: PDB Molecule:bifunctional oligoribonuclease and pap phosphatase nrna;
PDBTitle: structure of bacillus nanornase a (wt)
5c5xspB_
100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase acting on cyclic dinucleotides;
PDBTitle: the catalytic domain of gdpp with 5'-papa
6c1ir6A_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease recj;
PDBTitle: crystal structure of exonuclease recj bound to manganese
7d1ir6a_
100.0 22
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Exonuclease RecJ
8c5f56A_
100.0 23
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded-dna-specific exonuclease;
PDBTitle: structure of recj complexed with dna and ssb-ct
9c5ghrA_
100.0 20
PDB header:dna binding protein/replication
Chain: A: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
10d1k20a_
100.0 16
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
11d1i74a_
100.0 16
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
12d2hawa1
100.0 16
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
13c2zxrA_
100.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj;
PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8
14c4rpaA_
100.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:probable manganese-dependent inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from staphylococcus2 aureus in complex with mn2+
15c5yh1A_
100.0 15
PDB header:ribosomal protein
Chain: A: PDB Molecule:member of s1p family of ribosomal proteins;
PDBTitle: member of s1p family of ribosomal proteins pf0399 dhh domain
16d1wpna_
100.0 19
Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Manganese-dependent inorganic pyrophosphatase (family II)
17c2eb0B_
100.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:manganese-dependent inorganic pyrophosphatase;
PDBTitle: crystal structure of methanococcus jannaschii putative family ii2 inorganic pyrophosphatase
18c6mtzB_
100.0 18
PDB header:unknown function
Chain: B: PDB Molecule:hepc.19480.a.b1;
PDBTitle: crystal structure of an uncharacterized protein from helicobacter2 pylori g27
19c2qb6A_
99.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: saccharomyces cerevisiae cytosolic exopolyphosphatase, sulfate complex
20c5ghrC_
99.9 18
PDB header:dna binding protein/replication
Chain: C: PDB Molecule:ssdna-specific exonuclease;
PDBTitle: dna replication protein
21c6cc2A_
not modelled 97.7 14
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 45 cdc45 putative;
PDBTitle: crystal structure of cdc45 from entamoeba histolytica
22c3jc6E_
not modelled 97.1 25
PDB header:replication
Chain: E: PDB Molecule:cell division control protein 45;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
23c5dgoA_
not modelled 96.9 15
PDB header:cell cycle
Chain: A: PDB Molecule:cell division control protein 45 homolog;
PDBTitle: crystal structure of cell division cycle protein 45 (cdc45)
24c4fc5A_
not modelled 95.2 20
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ton_0340
25c3g98B_
not modelled 91.4 23
PDB header:ligase
Chain: B: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of the c-ala domain from aquifex aeolicus2 alanyl-trna synthetase
26d1ybha1
not modelled 87.7 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
27c4ivnB_
not modelled 87.0 18
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the vibrio vulnificus nanr protein complexed with mannac-6p
28c2zvfG_
not modelled 86.4 14
PDB header:ligase
Chain: G: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase c-terminal dimerization domain
29c3wqyB_
not modelled 84.7 12
PDB header:ligase/rna
Chain: B: PDB Molecule:alanine--trna ligase;
PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna synthetase in2 complex with wild-type trna(ala) having g3.u70
30c3shoA_
not modelled 83.6 27
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
31c3cf4G_
not modelled 78.4 12
PDB header:oxidoreductase
Chain: G: PDB Molecule:acetyl-coa decarboxylase/synthase epsilon subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
32d2ihta1
not modelled 76.0 24
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
33c5uqiA_
not modelled 74.2 18
PDB header:isomerase
Chain: A: PDB Molecule:phosphosugar isomerase;
PDBTitle: e. coli cft073 c3406 in complex with a5p
34d1m3sa_
not modelled 70.1 12
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
35c3d3jA_
not modelled 69.2 17
PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
36c3trjC_
not modelled 66.8 10
PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
37d1vima_
not modelled 66.6 18
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
38c2xhzC_
not modelled 66.0 14
PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
39c3fxaA_
not modelled 65.1 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
40d2djia1
not modelled 64.3 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
41d1jeoa_
not modelled 60.5 12
Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
42d2ez9a1
not modelled 60.3 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
43c5i01B_
not modelled 60.2 11
PDB header:isomerase
Chain: B: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of phosphoheptose isomerase gmha from neisseria gonorrhoeae
44d1d7ya2
not modelled 59.5 21
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
45c3cvjB_
not modelled 59.4 8
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
46d1ozha1
not modelled 59.1 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
47c1vmeB_
not modelled 57.6 23
PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
48d1p3da1
not modelled 55.1 13
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
49c2f00A_
not modelled 54.9 20
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
50d1j6ua1
not modelled 54.3 18
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
51c5zvqA_
not modelled 54.3 23
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
52c3pnxF_
not modelled 53.7 18
PDB header:transferase
Chain: F: PDB Molecule:putative sulfurtransferase dsre;
PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution
53c2qs7D_
not modelled 53.4 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution
54d1iuka_
not modelled 52.9 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
55c5zbyA_
not modelled 52.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:hydrogenase maturation protease hyci;
PDBTitle: crystal structure of a [nife] hydrogenase maturation protease hyci2 from thermococcus kodakarensis kod1
56d1q1ra2
not modelled 51.7 23
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
57c2puwA_
not modelled 51.7 13
PDB header:transferase
Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate
PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans
58d1okga1
not modelled 50.5 17
Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
59d1vdda_
not modelled 50.0 13
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
60d2d59a1
not modelled 49.9 12
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
61c1okgA_
not modelled 47.4 17
PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
62c3lzcA_
not modelled 41.1 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:dph2;
PDBTitle: crystal structure of dph2 from pyrococcus horikoshii
63c3fofD_
not modelled 40.9 11
PDB header:isomerase/dna
Chain: D: PDB Molecule:dna topoisomerase 4 subunit b;
PDBTitle: structural insight into the quinolone-dna cleavage complex2 of type iia topoisomerases
64d2ji7a1
not modelled 40.6 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
65c4wb1B_
not modelled 40.3 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:cals8;
PDBTitle: crystal structure of cals8 from micromonospora echinospora (p294s2 mutant)
66c3q3vA_
not modelled 40.3 17
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of phosphoglycerate kinase from campylobacter2 jejuni.
67d1zpda1
not modelled 39.0 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
68d1gv4a2
not modelled 38.8 13
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
69d1ovma1
not modelled 38.6 15
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
70c1vddC_
not modelled 38.3 13
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
71c2zjtB_
not modelled 37.7 14
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of dna gyrase b' domain sheds lights on the2 mechanism for t-segment navigation
72d2gk3a1
not modelled 37.1 29
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:STM3548-like
73c2qlcC_
not modelled 36.9 19
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein radc homolog;
PDBTitle: the crystal structure of dna repair protein radc from chlorobium2 tepidum tls
74c2k5eA_
not modelled 35.9 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
75c3guxA_
not modelled 34.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative zn-dependent exopeptidase;
PDBTitle: crystal structure of a putative zn-dependent exopeptidase (bvu_1317)2 from bacteroides vulgatus atcc 8482 at 1.80 a resolution
76c5xk2A_
not modelled 34.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:diacylglycerol lipase;
PDBTitle: crystal structure of mono- and diacylglycerol lipase from aspergillus2 oryzae
77c3euaD_
not modelled 33.7 13
PDB header:isomerase
Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution
78d3pmga3
not modelled 33.6 21
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
79d1q6za1
not modelled 33.3 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
80c2zj3A_
not modelled 33.1 14
PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
81c3d3kD_
not modelled 32.9 17
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
82c2duwA_
not modelled 32.1 17
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
83c3rhtB_
not modelled 31.9 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
84d1r3sa_
not modelled 31.5 14
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
85c3nuhB_
not modelled 31.5 11
PDB header:isomerase
Chain: B: PDB Molecule:dna gyrase subunit b;
PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function
86c1u57A_
not modelled 29.6 26
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: nmr structure of the (345-392)gag sequence from hiv-1
87c4tmaH_
not modelled 28.2 11
PDB header:isomerase/isomerase inhibitor
Chain: H: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of gyrase bound to its inhibitor yacg
88c4s1wA_
not modelled 27.9 17
PDB header:transferase
Chain: A: PDB Molecule:glutamine--fructose-6-phosphate aminotransferase
PDBTitle: structure of a putative glutamine--fructose-6-phosphate2 aminotransferase from staphylococcus aureus subsp. aureus mu50
89d1tjya_
not modelled 27.6 11
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
90c5t76A_
not modelled 27.3 14
PDB header:translation
Chain: A: PDB Molecule:alanine--trna ligase, cytoplasmic;
PDBTitle: a fragment of a human trna synthetase
91d1vmea2
not modelled 27.3 23
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:ROO N-terminal domain-like
92d1j93a_
not modelled 26.6 20
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Uroporphyrinogen decarboxylase, UROD
93c1jpkA_
not modelled 26.2 14
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase
94c1yi1A_
not modelled 26.2 17
PDB header:transferase
Chain: A: PDB Molecule:acetolactate synthase;
PDBTitle: crystal structure of arabidopsis thaliana acetohydroxyacid synthase in2 complex with a sulfonylurea herbicide, tribenuron methyl
95c5btaD_
not modelled 26.1 14
PDB header:isomerase/dna
Chain: D: PDB Molecule:dna gyrase subunit b;
PDBTitle: crystal structure of a topoisomerase ii complex
96c4z2cD_
not modelled 24.8 11
PDB header:isomerase
Chain: D: PDB Molecule:dna gyrase subunit b;
PDBTitle: quinolone(moxifloxacin)-dna cleavage complex of gyrase from s.2 pneumoniae
97c3mc3A_
not modelled 24.4 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dsre/dsrf-like family protein;
PDBTitle: crystal structure of dsre/dsrf-like family protein (np_342589.1) from2 sulfolobus solfataricus at 1.49 a resolution
98c4a7pA_
not modelled 24.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:udp-glucose dehydrogenase;
PDBTitle: se-met derivatized ugdg, udp-glucose dehydrogenase from sphingomonas2 elodea
99d1xhca2
not modelled 23.4 16
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
100c1zmrA_
not modelled 23.1 20
PDB header:transferase
Chain: A: PDB Molecule:phosphoglycerate kinase;
PDBTitle: crystal structure of the e. coli phosphoglycerate kinase
101d1kfia3
not modelled 22.7 29
Fold:Phosphoglucomutase, first 3 domains
Superfamily:Phosphoglucomutase, first 3 domains
Family:Phosphoglucomutase, first 3 domains
102d1j5xa_
not modelled 22.2 12
Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
103d1pvda1
not modelled 21.8 12
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
104c3tbfA_
not modelled 21.7 14
PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase
PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.
105c4erhB_
not modelled 21.5 7
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein a;
PDBTitle: the crystal structure of ompa domain of ompa from salmonella enterica2 subsp. enterica serovar typhimurium str. 14028s
106c3fkjA_
not modelled 21.2 11
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution

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