Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2856_(nicT)_3166694_3167812
DateWed Aug 7 12:50:52 BST 2019
Unique Job ID4fc477315f5282dd
SequenceMASSQLDRQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.949 Y:26.425 Z:19.473
Model (left) based on template c4ui9A_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: atomic structure of the human anaphase-promoting complex
Confidence and coverage
Confidence: 83.8% Coverage: 9%
32 residues ( 9% of your sequence) have been modelled with 83.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ui9A_
83.8 38
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: atomic structure of the human anaphase-promoting complex
2c5a31A_
83.0 38
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: structure of the human apc-cdh1-hsl1-ubch10 complex.
3c5l9uA_
82.0 29
PDB header:signaling protein
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc/c-cdh1) with2 a cross linked ubiquitin variant-substrate-ube2c (ubch10) complex3 representing key features of multiubiquitination
4c5khrA_
79.4 29
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome complex (apc152 deletion mutant) in complex with the e2 ube2c/ubch10 poised for3 ubiquitin ligation to substrate (apc/c-cdc20-substrate-ube2c)
5c5khuA_
62.0 29
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 1;
PDBTitle: model of human anaphase-promoting complex/cyclosome (apc15 deletion2 mutant), in complex with the mitotic checkpoint complex (apc/c-cdc20-3 mcc) based on cryo em data at 4.8 angstrom resolution
6c5vkvA_
53.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
7c5xamA_
50.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
8d1fftb2
41.6 15
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
9c3kb4D_
37.9 20
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr8543 protein;
PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141
10d1nvpd1
36.9 27
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
11c5gasN_
34.2 26
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
12d1nh2d1
33.4 36
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
13c6hwhW_
27.4 18
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase subunit 3;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
14c1rr2A_
25.8 14
PDB header:transferase
Chain: A: PDB Molecule:transcarboxylase 5s subunit;
PDBTitle: propionibacterium shermanii transcarboxylase 5s subunit bound to 2-2 ketobutyric acid
15d1h2sa_
24.0 15
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
16c6cfwE_
22.7 35
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
17c1nvpD_
22.3 21
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia gamma chain;
PDBTitle: human tfiia/tbp/dna complex
18c5xvjB_
20.3 38
PDB header:gene regulation
Chain: B: PDB Molecule:phd finger protein alfin-like 7;
PDBTitle: crystal structure of al7 pal domain
19c1qgeE_
17.9 32
PDB header:hydrolase
Chain: E: PDB Molecule:protein (triacylglycerol hydrolase);
PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase
20c6csmC_
17.4 17
PDB header:membrane protein
Chain: C: PDB Molecule:gtacr1;
PDBTitle: crystal structure of the natural light-gated anion channel gtacr1
21c4hhsA_
not modelled 16.7 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-dioxygenase;
PDBTitle: crystal structure of fatty acid alpha-dioxygenase (arabidopsis2 thaliana)
22d2h8pc1
not modelled 15.0 17
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
23c2zyfA_
not modelled 14.9 11
PDB header:transferase
Chain: A: PDB Molecule:homocitrate synthase;
PDBTitle: crystal structure of homocitrate synthase from thermus thermophilus2 complexed with magnesuim ion and alpha-ketoglutarate
24c1nh2D_
not modelled 14.5 29
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia small chain;
PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
25d1fftc_
not modelled 14.3 18
Fold:Cytochrome c oxidase subunit III-like
Superfamily:Cytochrome c oxidase subunit III-like
Family:Cytochrome c oxidase subunit III-like
26c2jo1A_
not modelled 14.2 29
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
27c6gyhA_
not modelled 14.0 20
PDB header:proton transport
Chain: A: PDB Molecule:family a g protein-coupled receptor-like protein;
PDBTitle: crystal structure of the light-driven proton pump coccomyxa2 subellipsoidea rhodopsin csr
28c6o7ua_
not modelled 13.5 17
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
29c5zktB_
not modelled 12.1 38
PDB header:transcription
Chain: B: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
30c6o7xa_
not modelled 11.9 17
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
31d2fyma2
not modelled 11.3 23
Fold:Enolase N-terminal domain-like
Superfamily:Enolase N-terminal domain-like
Family:Enolase N-terminal domain-like
32c3jcuw_
not modelled 11.2 26
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
33c5azdA_
not modelled 11.1 23
PDB header:transport protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of thermophilic rhodopsin.
34c4mndA_
not modelled 11.1 23
PDB header:transferase
Chain: A: PDB Molecule:ctp l-myo-inositol-1-phosphate cytidylyltransferase/cdp-l-
PDBTitle: crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional2 membrane protein
35c1skhA_
not modelled 10.9 19
PDB header:unknown function
Chain: A: PDB Molecule:major prion protein 2;
PDBTitle: n-terminal (1-30) of bovine prion protein
36c6agfB_
not modelled 10.9 14
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
37c5zktA_
not modelled 10.6 33
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
38c5xsyB_
not modelled 10.3 20
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated sodium channel beta subunit 1;
PDBTitle: structure of the nav1.4-beta1 complex from electric eel
39d1j2za_
not modelled 10.0 15
Fold:Single-stranded left-handed beta-helix
Superfamily:Trimeric LpxA-like enzymes
Family:UDP N-acetylglucosamine acyltransferase
40c2nx9B_
not modelled 10.0 18
PDB header:lyase
Chain: B: PDB Molecule:oxaloacetate decarboxylase 2, subunit alpha;
PDBTitle: crystal structure of the carboxyltransferase domain of the2 oxaloacetate decarboxylase na+ pump from vibrio cholerae
41c3kcvG_
not modelled 9.6 13
PDB header:transport protein
Chain: G: PDB Molecule:probable formate transporter 1;
PDBTitle: structure of formate channel
42c4lhfA_
not modelled 9.4 23
PDB header:viral protein
Chain: A: PDB Molecule:regulatory protein cox;
PDBTitle: crystal structure of a dna binding protein from phage p2
43c6owsB_
not modelled 9.4 14
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
44c3wt9A_
not modelled 8.8 14
PDB header:proton transport
Chain: A: PDB Molecule:rhodopsin i;
PDBTitle: crystal structure of the cell-free synthesized membrane protein,2 acetabularia rhodopsin i, at 1.48 angstrom
45c5doqC_
not modelled 8.7 37
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
46c5ir6C_
not modelled 8.7 37
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
47d2i9fa1
not modelled 8.4 33
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Arterivirus nucleocapsid protein
48d1jjcb6
not modelled 8.2 50
Fold:PheT/TilS domain
Superfamily:PheT/TilS domain
Family:B3/B4 domain of PheRS, PheT
49d1x9ia_
not modelled 7.9 24
Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
50d1l7va_
not modelled 7.4 14
Fold:ABC transporter involved in vitamin B12 uptake, BtuC
Superfamily:ABC transporter involved in vitamin B12 uptake, BtuC
Family:ABC transporter involved in vitamin B12 uptake, BtuC
51c4b4tT_
not modelled 7.3 18
PDB header:hydrolase
Chain: T: PDB Molecule:26s proteasome regulatory subunit rpn12;
PDBTitle: near-atomic resolution structural model of the yeast 26s proteasome
52c6e1jB_
not modelled 7.3 17
PDB header:plant protein
Chain: B: PDB Molecule:2-isopropylmalate synthase, a genome specific 1;
PDBTitle: crystal structure of methylthioalkylmalate synthase (bjumam1.1) from2 brassica juncea
53c2i9fB_
not modelled 6.8 33
PDB header:viral protein
Chain: B: PDB Molecule:nucleocapsid;
PDBTitle: structure of the equine arterivirus nucleocapsid protein
54c3msqC_
not modelled 6.6 12
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
55c3t57A_
not modelled 6.4 15
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine o-acyltransferase domain-containing
PDBTitle: activity and crystal structure of arabidopsis udp-n-acetylglucosamine2 acyltransferase
56c5ks8D_
not modelled 6.4 11
PDB header:ligase
Chain: D: PDB Molecule:pyruvate carboxylase subunit beta;
PDBTitle: crystal structure of two-subunit pyruvate carboxylase from2 methylobacillus flagellatus
57c5m4sA_
not modelled 6.2 21
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor iia subunit 2,transcription
PDBTitle: transcription factor tfiia as a single chain protein
58d1ex9a_
not modelled 6.1 15
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
59d1f4nb_
not modelled 6.0 60
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
60c6agbJ_
not modelled 6.0 13
PDB header:hydrolase/rna
Chain: J: PDB Molecule:ribonuclease p/mrp protein subunit rpp1;
PDBTitle: cryo-em structure of yeast ribonuclease p
61c2bbjB_
not modelled 5.9 17
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
62c3cyvA_
not modelled 5.9 23
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen decarboxylase;
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism
63c4jr8A_
not modelled 5.7 14
PDB header:proton transport
Chain: A: PDB Molecule:cruxrhodopsin-3;
PDBTitle: crystal structure of cruxrhodopsin-3 from haloarcula vallismortis at2 2.3 angstrom resolution
64c6mzdA_
not modelled 5.7 83
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1;
PDBTitle: human tfiid lobe a canonical
65c6elhA_
not modelled 5.7 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
66c3ewbX_
not modelled 5.6 15
PDB header:transferase
Chain: X: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of n-terminal domain of putative 2-isopropylmalate2 synthase from listeria monocytogenes
67c4qidB_
not modelled 5.6 18
PDB header:membrane protein
Chain: B: PDB Molecule:bacteriorhodopsin-i;
PDBTitle: crystal structure of haloquadratum walsbyi bacteriorhodopsin
68c4mt1A_
not modelled 5.6 15
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
69c4hu8A_
not modelled 5.5 40
PDB header:hydrolase
Chain: A: PDB Molecule:gh10 xylanase;
PDBTitle: crystal structure of a bacterial ig-like domain containing gh102 xylanase from termite gut
70c1n0wB_
not modelled 5.5 71
PDB header:gene regulation/antitumor protein
Chain: B: PDB Molecule:breast cancer type 2 susceptibility protein;
PDBTitle: crystal structure of a rad51-brca2 brc repeat complex
71c2v50A_
not modelled 5.5 15
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
72c6eyuA_
not modelled 5.5 21
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
73c1bctA_
not modelled 5.4 20
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
74d1gmua2
not modelled 5.3 42
Fold:Ferredoxin-like
Superfamily:Urease metallochaperone UreE, C-terminal domain
Family:Urease metallochaperone UreE, C-terminal domain
75c5ch6B_
not modelled 5.3 12
PDB header:transcription
Chain: B: PDB Molecule:frigida;
PDBTitle: crystal structure of frigida flowering-time regulator
76c6n1fD_
not modelled 5.2 64
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, 2og-fe(ii) oxygenase family;
PDBTitle: crystal structure of oxidoreductase, 2og-fe(ii) oxygenase family, from2 burkholderia pseudomallei
77d1kw3b2
not modelled 5.2 19
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
78c1zxxA_
not modelled 5.1 29
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
79c6e3yE_
not modelled 5.1 36
PDB header:signaling protein
Chain: E: PDB Molecule:receptor activity-modifying protein 1;
PDBTitle: cryo-em structure of the active, gs-protein complexed, human cgrp2 receptor
80d1f4na_
not modelled 5.1 60
Fold:ROP-like
Superfamily:ROP protein
Family:ROP protein
81c3n00B_
not modelled 5.0 71
PDB header:transcription regulator
Chain: B: PDB Molecule:nuclear receptor corepressor 1;
PDBTitle: crystal structure of a deletion mutant of human reverba ligand binding2 domain bound with an ncor id1 peptide determined to 2.60a

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below