Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2862A_(RVBD2862A)_3174757_3175005
DateWed Aug 7 12:50:53 BST 2019
Unique Job ID6812a1ea2fb24039
SequenceILSDEEREAF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.070 Y:21.467 Z:19.971
Model (left) based on template c6qeqD_
Top template information
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
Confidence and coverage
Confidence: 69.1% Coverage: 37%
30 residues ( 37% of your sequence) have been modelled with 69.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6qeqD_



69.1 17
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
2c5yirH_



32.1 64
PDB header:protein binding
Chain: H: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/gabarap complex
3c5yirG_



26.9 64
PDB header:protein binding
Chain: G: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/gabarap complex
4d1ujka_



24.0 16
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
5d1mija_



18.7 35
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
6c2o7aA_



17.8 32
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: t4 lysozyme c-terminal fragment
7c6ajnF_



17.8 18
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
8c4e6tA_



17.0 16
PDB header:transferase
Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: structure of lpxa from acinetobacter baumannii at 1.8a resolution2 (p212121 form)
9c5yisC_



16.7 64
PDB header:protein binding
Chain: C: PDB Molecule:ankyrin-2;
PDBTitle: crystal structure of ankb lir/lc3b complex
10c6gtsC_



16.2 18
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
11c2lmdA_



16.1 29
PDB header:transcription
Chain: A: PDB Molecule:prospero homeobox protein 1;
PDBTitle: minimal constraints solution nmr structure of prospero homeobox2 protein 1 from homo sapiens, northeast structural genomics consortium3 target hr4660b
12d1c07a_



15.7 7
Fold:EF Hand-like
Superfamily:EF-hand
Family:Eps15 homology domain (EH domain)
13c2d46A_



15.6 45
PDB header:metal transport
Chain: A: PDB Molecule:calcium channel, voltage-dependent, beta 4
PDBTitle: solution structure of the human beta4a-a domain
14c3eujB_



14.1 29
PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head domain)-2 atpgammas complex, symmetric dimer
15c4r36A_



14.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: crystal structure analysis of lpxa, a udp-n-acetylglucosamine2 acyltransferase from bacteroides fragilis 9343
16d1p5ca_



13.9 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
17c5y70A_



13.3 40
PDB header:membrane protein
Chain: A: PDB Molecule:kinetoplastid membrane protein 11;
PDBTitle: nmr structure of kmp11 in dpc micelle
18c4xsjA_



13.3 32
PDB header:transport protein
Chain: A: PDB Molecule:lysozyme,calcium uniporter protein, mitochondrial;
PDBTitle: crystal structure of the n-terminal domain of the human mitochondrial2 calcium uniporter fused with t4 lysozyme
19c2kg5A_



12.7 35
PDB header:signaling protein
Chain: A: PDB Molecule:arf-gap, rho-gap domain, ank repeat and ph
PDBTitle: nmr solution structure of arap3-sam
20c2k5jB_



12.6 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
21d1cg5a_



not modelled 12.1 14
Fold:Globin-like
Superfamily:Globin-like
Family:Globins
22c5b2gG_



not modelled 11.9 32
PDB header:membrane protein
Chain: G: PDB Molecule:endolysin,claudin-4;
PDBTitle: crystal structure of human claudin-4 in complex with c-terminal2 fragment of clostridium perfringens enterotoxin
23d1qzma_



not modelled 11.4 33
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
24c4iapB_



not modelled 10.9 32
PDB header:lipid binding protein/ hydrorase
Chain: B: PDB Molecule:oxysterol-binding protein homolog 3,endolysin,oxysterol-
PDBTitle: crystal structure of ph domain of osh3 from saccharomyces cerevisiae
25d1juqa_



not modelled 10.7 12
Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
26c3sn6R_



not modelled 10.6 32
PDB header:signaling protein/hydrolase
Chain: R: PDB Molecule:endolysin,beta-2 adrenergic receptor;
PDBTitle: crystal structure of the beta2 adrenergic receptor-gs protein complex
27c1x37A_



not modelled 10.5 38
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: structure of bacillus subtilis lon protease ssd domain
28c5vbaA_



not modelled 10.4 32
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
29c6qajB_



not modelled 10.3 33
PDB header:nuclear protein
Chain: B: PDB Molecule:endolysin,transcription intermediary factor 1-beta;
PDBTitle: structure of the tripartite motif of kap1/trim28
30c5v88A_



not modelled 10.0 32
PDB header:ligase / protein binding
Chain: A: PDB Molecule:lysozyme,dcn1-like protein 1;
PDBTitle: structure of dcn1 bound to nacm-cov
31c6a9eA_



not modelled 10.0 32
PDB header:lipid transport
Chain: A: PDB Molecule:endolysin,autophagy-related protein 2;
PDBTitle: crystal structure of the n-terminal domain of atg2
32c3eukJ_



not modelled 9.7 29
PDB header:cell cycle
Chain: J: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head domain)-2 atpgammas complex, asymmetric dimer
33d1fs2b1



not modelled 9.6 25
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
34d1lpya_



not modelled 9.3 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
35c5yqrA_



not modelled 9.0 32
PDB header:transport protein
Chain: A: PDB Molecule:endolysin/membrane-anchored lipid-binding protein lam6
PDBTitle: crystal structure of the ph-like domain of lam6
36c2qnlA_



not modelled 9.0 31
PDB header:signaling protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dna damage-inducible protein2 (chu_0679) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
37d1ucva_



not modelled 8.7 13
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
38c5zrzB_



not modelled 8.5 24
PDB header:protein binding
Chain: B: PDB Molecule:sterile alpha motif domain-containing protein 5;
PDBTitle: crystal structure of epha5/samd5 complex
39c3omyB_



not modelled 8.5 42
PDB header:dna binding protein
Chain: B: PDB Molecule:protein tram;
PDBTitle: crystal structure of the ped208 tram n-terminal domain
40c6fxfA_



not modelled 8.4 29
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 3;
PDBTitle: crystal structure of the sam domain of murine sly1
41c3wknG_



not modelled 8.2 50
PDB header:immune system
Chain: G: PDB Molecule:affinger p17;
PDBTitle: crystal structure of the artificial protein affinger p17 (af.p17)2 complexed with fc fragment of human igg
42c1yybA_



not modelled 8.2 57
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 5;
PDBTitle: solution structure of 1-26 fragment of human programmed2 cell death 5 protein
43c2qb0D_



not modelled 8.2 32
PDB header:hydrolase regulator
Chain: D: PDB Molecule:telsam domain - lysozyme chimera;
PDBTitle: structure of the 2tel crystallization module fused to t4 lysozyme with2 an ala-gly-pro linker.
44c4arjB_



not modelled 8.1 32
PDB header:hydrolase
Chain: B: PDB Molecule:pesticin, lysozyme;
PDBTitle: crystal structure of a pesticin (translocation and receptor binding2 domain) from y. pestis and t4-lysozyme chimera
45c2ctoA_



not modelled 8.0 70
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
46d176la_



not modelled 8.0 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
47c2n6yA_



not modelled 7.9 24
PDB header:ligase
Chain: A: PDB Molecule:hmwp2 nonribosomal peptide synthetase;
PDBTitle: solution structure of holo arcp from yersiniabactin synthetase
48d2h80a1



not modelled 7.8 60
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
49d1o7ka_



not modelled 7.8 38
Fold:PX domain
Superfamily:PX domain
Family:PX domain
50c2zetD_



not modelled 7.8 34
PDB header:signaling protein
Chain: D: PDB Molecule:melanophilin;
PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin
51c2ba3A_



not modelled 7.6 31
PDB header:dna binding protein
Chain: A: PDB Molecule:nika;
PDBTitle: nmr structure of nika n-terminal fragment
52d1rg6a_



not modelled 7.5 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
53d1k28a3



not modelled 7.1 26
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
54c3fxeA_



not modelled 7.0 40
PDB header:unknown function
Chain: A: PDB Molecule:protein icmq;
PDBTitle: crystal structure of interacting domains of icmr and icmq (seleno-2 derivative)
55d2foka2



not modelled 6.9 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Restriction endonuclease FokI, N-terminal (recognition) domain
56c5vx3H_



not modelled 6.7 75
PDB header:apoptosis
Chain: H: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
57c5vx3F_



not modelled 6.7 75
PDB header:apoptosis
Chain: F: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
58c5vx3D_



not modelled 6.7 75
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
59d1heka_



not modelled 6.6 78
Fold:Retroviral matrix proteins
Superfamily:Retroviral matrix proteins
Family:EIAV matrix antigen
60c2kwuA_



not modelled 6.6 27
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
61c5vx0B_



not modelled 6.5 75
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
62c5vx2D_



not modelled 6.5 75
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
63c5vwyB_



not modelled 6.5 75
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-h3pc-rt
64c5vx3B_



not modelled 6.5 75
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bcl-xl in complex with bim-h3pc-rt
65c5vx0D_



not modelled 6.5 75
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak in complex with bim-h3glg
66d1dp3a_



not modelled 6.4 50
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:DNA-binding domain (fragment?) of the TraM protein
67c5vx2B_



not modelled 6.4 75
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim-h3pc-rt
68d1fs1b1



not modelled 6.4 24
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
69c4exmB_



not modelled 6.3 32
PDB header:toxin, hydrolase
Chain: B: PDB Molecule:pesticin, lysozyme chimera;
PDBTitle: the crystal structure of an engineered phage lysin containing the2 binding domain of pesticin and the killing domain of t4-lysozyme
70d1oxja1



not modelled 6.3 21
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
71c4ydeB_



not modelled 6.3 19
PDB header:transferase
Chain: B: PDB Molecule:protein farnesyltransferase/geranylgeranyltransferase type-
PDBTitle: crystal structure of candida albicans protein farnesyltransferase2 binary complex with the isoprenoid farnesyldiphosphate
72c5zrzA_



not modelled 6.1 18
PDB header:protein binding
Chain: A: PDB Molecule:ephrin type-a receptor 5;
PDBTitle: crystal structure of epha5/samd5 complex
73d2dkya1



not modelled 6.1 50
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
74d1coka_



not modelled 6.1 27
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
75c6a73B_



not modelled 6.1 32
PDB header:signaling protein
Chain: B: PDB Molecule:cop9 signalosome complex subunit 2,endolysin;
PDBTitle: complex structure of csn2 with ip6
76c2o4wA_



not modelled 6.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme;
PDBTitle: t4 lysozyme circular permutant
77d1nexa1



not modelled 6.0 23
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
78c4dwnB_



not modelled 5.8 55
PDB header:apoptosis
Chain: B: PDB Molecule:bcl10-interacting card protein;
PDBTitle: crystal structure of human bincard card
79c5kw2A_



not modelled 5.8 32
PDB header:fatty acid binding protein/hydrolase
Chain: A: PDB Molecule:free fatty acid receptor 1,lysozyme,free fatty acid
PDBTitle: the extra-helical binding site of gpr40 and the structural basis for2 allosteric agonism and incretin stimulation
80c3gr1A_



not modelled 5.7 21
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)
81c2n11A_



not modelled 5.7 39
PDB header:motor protein,protein transport
Chain: A: PDB Molecule:unconventional myosin-vi;
PDBTitle: solution structure of human myosin vi isoform3 (998-1071)
82c2lmrA_



not modelled 5.6 47
PDB header:signaling protein
Chain: A: PDB Molecule:ankyrin repeat and sam domain-containing protein 1a;
PDBTitle: solution structure of the first sam domain of odin
83c6gvwF_



not modelled 5.5 26
PDB header:signaling protein
Chain: F: PDB Molecule:brca1-a complex subunit abraxas 1;
PDBTitle: crystal structure of the brca1-a complex
84c4gitA_



not modelled 5.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
85c2qkqA_



not modelled 5.5 33
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-b receptor 4;
PDBTitle: structure of the sam domain of human ephrin type-b receptor2 4
86d1iufa1



not modelled 5.5 24
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
87d1mlda2



not modelled 5.4 13
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
88d157la_



not modelled 5.4 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
89c2k6rA_



not modelled 5.4 46
PDB header:de novo protein
Chain: A: PDB Molecule:full sequence design 1 synthetic superstable;
PDBTitle: protein folding on a highly rugged landscape: experimental observation2 of glassy dynamics and structural frustration
90c5vwwD_



not modelled 5.3 60
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-rt - tetragonal
91d1t8fa_



not modelled 5.2 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Phage lysozyme
92c5ndzA_



not modelled 5.2 32
PDB header:membrane protein
Chain: A: PDB Molecule:lysozyme,proteinase-activated receptor 2,soluble cytochrome
PDBTitle: crystal structure of a thermostabilised human protease-activated2 receptor-2 (par2) in complex with az3451 at 3.6 angstrom resolution
93c3njcA_



not modelled 5.1 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yslb protein;
PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460.
94d1b4ua_



not modelled 5.1 20
Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB
95d2ctza1



not modelled 5.1 13
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
96d2ovra1



not modelled 5.0 25
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
97c1fsdA_



not modelled 5.0 46
PDB header:novel sequence
Chain: A: PDB Molecule:full sequence design 1 of beta beta alpha motif;
PDBTitle: full sequence design 1 (fsd-1) of beta beta alpha motif,2 nmr, 41 structures

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