Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2863_(-)_3175002_3175382
DateWed Aug 7 12:50:53 BST 2019
Unique Job ID6fcbb691b22125ea
SequenceMIFVDTNVFM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.123 Y:34.302 Z:42.745
Model (left) based on template c5wzfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
Confidence and coverage
Confidence: 99.9% Coverage: 94%
119 residues ( 94% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5wzfB_



99.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
2c5x3tD_



99.8 22
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
3d1w8ia_



99.8 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c3zvkC_



99.6 18
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
5d2fe1a1



99.6 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
6c2fe1A_



99.6 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
7c4xgrG_



99.6 13
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
8c6nklA_



99.6 16
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
9c6a7vG_



99.6 19
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
10d2h1ca1



99.6 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
11c3tndC_



99.5 15
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
12c5l6mC_



99.4 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
13c4chgC_



99.3 18
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
14d1v96a1



99.3 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
15c3h87B_



99.3 12
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
16d1y82a1



99.2 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
17c5sv2A_



99.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
18d1v8pa_



99.1 15
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19c1v8pK_



99.1 15
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
20c3dboB_



99.0 20
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
21c3ix7A_



not modelled 98.1 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c3i8oA_



not modelled 98.0 13
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
23d1o4wa_



not modelled 97.7 21
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5yz4A_



not modelled 97.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
25c5jpqd_



not modelled 97.5 26
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
26c2hwwC_



not modelled 96.9 19
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
27c2lcqA_



not modelled 96.4 15
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
28c5ywwA_



not modelled 96.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
29c5f4hF_



not modelled 96.1 15
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
30c4mj7B_



not modelled 95.3 14
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
31c2hwyB_



not modelled 91.1 10
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c3v32B_



not modelled 33.3 10
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
33c6g5iy_



not modelled 32.9 16
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
34c3v33A_



not modelled 30.1 10
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c4mcjC_



not modelled 14.1 23
PDB header:transferase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative nucleoside deoxyribosyltransferase2 (bdi_0649) from parabacteroides distasonis atcc 8503 at 2.40 a3 resolution
36c4ixoB_



not modelled 10.5 22
PDB header:protein binding
Chain: B: PDB Molecule:nifs-like protein;
PDBTitle: x-ray structure of nifs-like protein from rickettsia africae esf-5
37c1jqsB_



not modelled 9.4 12
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
38d1u9ya1



not modelled 5.0 21
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like

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