Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2865_(-)_3177547_3177828
DateWed Aug 7 12:50:53 BST 2019
Unique Job ID088b5eeb9a92587e
SequenceMRILPISTIK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.989 Y:26.797 Z:63.985
Model (left) based on template c3g5oA_
Top template information
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 98%
91 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5oA_



100.0 100
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
2c3oeiB_



99.9 28
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
3d2a6qa1



99.9 26
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
4c3d55A_



99.9 28
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
5d2a6qb1



99.8 31
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3hs2H_



99.6 25
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
7c3hryA_



99.5 27
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
8c2odkD_



99.4 34
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
9d2odka1



99.3 34
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
10c3k6qB_



94.5 13
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c4q2uM_



37.6 19
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
12c2p6pB_



32.7 16
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
13d1n0ea_



27.7 11
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
14c6nklD_



27.1 12
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
15c2v9vA_



26.7 4
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
16c6ncrB_



26.2 13
PDB header:ligase
Chain: B: PDB Molecule:tryptophan--trna ligase;
PDBTitle: crystal structure of tryptophan-trna ligase from chlamydia trachomatis2 with bound l-tryptophan
17c1n0fF_



25.7 11
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
18d1grja1



25.3 34
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
19d1qbjc_



22.8 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
20d1ez4a2



21.8 9
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
21d2ovra1



not modelled 21.7 21
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
22c3bpqA_



not modelled 21.7 28
PDB header:toxin
Chain: A: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
23c1nexC_



not modelled 21.0 19
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
24c3ot5D_



not modelled 20.3 20
PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
25c2qzsA_



not modelled 19.0 7
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp and2 glucose(wtgsb)
26d1nexa1



not modelled 19.0 19
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
27d1v4va_



not modelled 17.3 15
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
28d1rzua_



not modelled 17.2 8
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
29d1qgpa_



not modelled 17.2 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
30c2ovqA_



not modelled 17.2 21
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
31c4ochA_



not modelled 16.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease muts2;
PDBTitle: apo structure of smr domain of muts2 from deinococcus radiodurans
32d2gxba1



not modelled 16.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
33c5he8J_



not modelled 16.4 9
PDB header:protein binding
Chain: J: PDB Molecule:helicase loader;
PDBTitle: bacterial initiation protein
34d1pzga2



not modelled 16.1 16
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
35c2p4vA_



not modelled 16.1 16
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
36c1grjA_



not modelled 15.9 26
PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
37d1pkxa1



not modelled 15.8 17
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
38c2m4hA_



not modelled 15.6 32
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
39d1g8ma1



not modelled 15.4 15
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
40c2zqeA_



not modelled 14.9 8
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
41c3bpqC_



not modelled 14.7 28
PDB header:toxin
Chain: C: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
42d1fs2b1



not modelled 14.6 21
Fold:Skp1 dimerisation domain-like
Superfamily:Skp1 dimerisation domain-like
Family:Skp1 dimerisation domain-like
43c2p1nD_



not modelled 13.7 19
PDB header:signaling protein
Chain: D: PDB Molecule:skp1-like protein 1a;
PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
44c2yy5C_



not modelled 12.3 6
PDB header:ligase
Chain: C: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of tryptophanyl-trna synthetase from mycoplasma2 pneumoniae
45c5us5B_



not modelled 12.1 13
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
46c6nkoA_



not modelled 11.8 23
PDB header:unknown function
Chain: A: PDB Molecule:forh;
PDBTitle: crystal structure of forh
47c2plyB_



not modelled 11.3 23
PDB header:translation/rna
Chain: B: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: structure of the mrna binding fragment of elongation factor2 selb in complex with secis rna.
48c1lvaA_



not modelled 11.0 4
PDB header:translation
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of a c-terminal fragment of moorella2 thermoacetica elongation factor selb
49c5l87A_



not modelled 10.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
50c1wsuA_



not modelled 10.5 23
PDB header:translation/rna
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: c-terminal domain of elongation factor selb complexed with2 secis rna
51d1w7pd2



not modelled 10.1 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
52c3wadA_



not modelled 9.7 15
PDB header:transferase
Chain: A: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of glycosyltransferase vinc involved in the2 biosynthesis of vicenistatin
53c5ytpA_



not modelled 8.9 24
PDB header:dna binding protein
Chain: A: PDB Molecule:ttha0139;
PDBTitle: crystal structure of ttha0139 l34a from thermus thermophilus hb8
54c3sz3A_



not modelled 8.7 12
PDB header:ligase
Chain: A: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: crystal structure of tryptophanyl-trna synthetase from vibrio cholerae2 with an endogenous tryptophan
55c3s29C_



not modelled 8.6 14
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
56c5yhhA_



not modelled 8.5 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
57c4rbnD_



not modelled 8.4 17
PDB header:transferase
Chain: D: PDB Molecule:sucrose synthase:glycosyl transferases group 1;
PDBTitle: the crystal structure of nitrosomonas europaea sucrose synthase:2 insights into the evolutionary origin of sucrose metabolism in3 prokaryotes
58c3okaA_



not modelled 8.2 15
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
59d2bisa1



not modelled 7.8 14
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
60c3jvoA_



not modelled 7.5 15
PDB header:viral protein
Chain: A: PDB Molecule:gp6;
PDBTitle: crystal structure of bacteriophage hk97 gp6
61c6ct6B_



not modelled 7.5 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from eimeria maxima with2 nadh and oxamate
62c5d17L_



not modelled 7.4 13
PDB header:dna binding protein
Chain: L: PDB Molecule:transposon tn7 transposition protein tnse;
PDBTitle: structure of the c-terminal domain of tnse at 2.85 resolution
63d1h8ba_



not modelled 7.4 25
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
64d1sfea1



not modelled 7.2 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
65c3prhB_



not modelled 7.2 7
PDB header:ligase
Chain: B: PDB Molecule:tryptophanyl-trna synthetase;
PDBTitle: tryptophanyl-trna synthetase val144pro mutant from b. subtilis
66c4q8jE_



not modelled 7.1 12
PDB header:hydrolase
Chain: E: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan3;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
67c2do6A_



not modelled 7.0 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
68c2mqkA_



not modelled 6.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
69c5ghaF_



not modelled 6.6 8
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
70c1dpuA_



not modelled 6.6 0
PDB header:dna binding protein
Chain: A: PDB Molecule:replication protein a (rpa32) c-terminal domain;
PDBTitle: solution structure of the c-terminal domain of human rpa322 complexed with ung2(73-88)
71d1dpua_



not modelled 6.6 0
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal domain of RPA32
72d1lvaa4



not modelled 6.5 26
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
73c4pu4C_



not modelled 6.5 16
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
74c5l6mA_



not modelled 6.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
75c4d0kC_



not modelled 6.4 12
PDB header:gene regulation
Chain: C: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit
PDBTitle: complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
76c2r60A_



not modelled 6.4 18
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
77c3u5eL_



not modelled 6.4 29
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l13-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
78c4a18U_



not modelled 6.4 29
PDB header:ribosome
Chain: U: PDB Molecule:rpl13;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
79c3zf7N_



not modelled 6.2 29
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l13;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
80c2jnhA_



not modelled 6.2 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
81c6gneB_



not modelled 6.2 7
PDB header:transferase
Chain: B: PDB Molecule:probable starch synthase 4, chloroplastic/amyloplastic;
PDBTitle: catalytic domain of starch synthase iv from arabidopsis thaliana bound2 to adp and acarbose
82c4ghjA_



not modelled 6.1 17
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: 1.75 angstrom crystal structure of transcriptional regulator ftom2 vibrio vulnificus.
83d1b8pa2



not modelled 6.0 14
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
84c3zbeA_



not modelled 5.9 17
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
85c6d9tA_



not modelled 5.6 13
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase;
PDBTitle: bsha from staphylococcus aureus complexed with udp
86c3bjqA_



not modelled 5.6 19
PDB header:viral protein
Chain: A: PDB Molecule:phage-related protein;
PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution
87c3m05A_



not modelled 5.6 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pepe_1480;
PDBTitle: the crystal structure of a functionally unknown protein pepe_1480 from2 pediococcus pentosaceus atcc 25745
88c6ejiA_



not modelled 5.5 18
PDB header:transferase
Chain: A: PDB Molecule:wlac protein;
PDBTitle: structure of a glycosyltransferase
89c3j3bL_



not modelled 5.5 29
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l13;
PDBTitle: structure of the human 60s ribosomal proteins
90d1hlva1



not modelled 5.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
91c2auwB_



not modelled 5.1 19
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718

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