Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2873A_(RVBD2873A)_3184673_3184864
DateWed Aug 7 12:50:54 BST 2019
Unique Job ID47744af9c756f8fb
SequenceMTVTPRPAQA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.972 Y:26.242 Z:30.495
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.2% Coverage: 65%
41 residues ( 65% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_
99.2 10
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1
99.2 10
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_
98.9 30
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_
98.9 30
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1
98.3 18
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_
98.3 24
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1
98.1 18
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3oeiB_
97.4 22
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
9c3d55A_
97.3 22
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
10c3k6qB_
91.1 18
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_
63.7 19
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1
52.5 21
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d1v47a1
33.3 29
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
14c1r6xA_
32.6 19
PDB header:transferase
Chain: A: PDB Molecule:atp:sulfate adenylyltransferase;
PDBTitle: the crystal structure of a truncated form of yeast atp2 sulfurylase, lacking the c-terminal aps kinase-like domain,3 in complex with sulfate
15d1g8fa1
30.1 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
16d2ns0a1
26.3 27
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
17c1v47B_
22.4 32
PDB header:transferase
Chain: B: PDB Molecule:atp sulfurylase;
PDBTitle: crystal structure of atp sulfurylase from thermus2 thermophillus hb8 in complex with aps
18c2qjfB_
22.1 22
PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-
PDBTitle: crystal structure of atp-sulfurylase domain of human paps2 synthetase 1
19d1ogda_
19.4 29
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
20c3e7nB_
17.9 13
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
21c3daiA_
not modelled 17.4 31
PDB header:signaling protein
Chain: A: PDB Molecule:atpase family aaa domain-containing protein 2;
PDBTitle: crystal structure of the bromodomain of the human atad2
22c3iprC_
not modelled 17.2 11
PDB header:transferase
Chain: C: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component
23c3p13B_
not modelled 16.2 17
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
24d1x6va1
not modelled 15.9 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
25c2gksB_
not modelled 15.6 16
PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
26d1pdoa_
not modelled 15.4 6
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
27c2wcvI_
not modelled 14.9 17
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
28d1bifa2
not modelled 14.3 7
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
29c4heoA_
not modelled 14.2 35
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
30d1k6ma2
not modelled 14.0 7
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
31c6fmgC_
not modelled 13.6 6
PDB header:transferase
Chain: C: PDB Molecule:pts system mannose-specific transporter subunit iiab;
PDBTitle: structure of the mannose transporter iia domain from streptococcus2 pneumoniae
32c4a34L_
not modelled 13.5 17
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
33c3gx1A_
not modelled 13.2 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1832 protein;
PDBTitle: crystal structure of a domain of lin1832 from listeria innocua
34c2wcuB_
not modelled 12.8 22
PDB header:isomerase
Chain: B: PDB Molecule:protein fucu homolog;
PDBTitle: crystal structure of mammalian fucu
35c3mvkA_
not modelled 12.7 17
PDB header:isomerase
Chain: A: PDB Molecule:protein fucu;
PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a
36d2ob5a1
not modelled 12.1 22
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
37d2hq7a1
not modelled 11.2 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
38c1vw48_
not modelled 11.0 14
PDB header:ribosome
Chain: 8: PDB Molecule:54s ribosomal protein l13, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
39c1g8gB_
not modelled 10.9 23
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: atp sulfurylase from s. cerevisiae: the binary product complex with2 aps
40d1umka1
not modelled 10.2 22
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
41c1gk7A_
not modelled 10.1 25
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
42d2ifqa1
not modelled 9.9 11
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
43c3ve5D_
not modelled 9.8 28
PDB header:recombination
Chain: D: PDB Molecule:recombination protein recr;
PDBTitle: structure of recombination mediator protein recr16-196 deletion mutant
44d1m8pa1
not modelled 9.6 27
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
45c5t3uA_
not modelled 9.3 3
PDB header:transport protein
Chain: A: PDB Molecule:pts system, iia component;
PDBTitle: crystal structure of the pts iia protein associated with the fucose2 utilization operon from streptococcus pneumoniae
46c5uc2C_
not modelled 9.2 18
PDB header:hydrolase
Chain: C: PDB Molecule:domain of unknown function duf1849;
PDBTitle: crystal structure of beta-barrel-like, putative atp binding protein of2 domain of unknown function duf1849 from brucella abortus
47c3cr8C_
not modelled 9.0 23
PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltransferase, adenylylsulfate kinase;
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
48c3emxB_
not modelled 8.9 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: crystal structure of thioredoxin from aeropyrum pernix
49d3beda1
not modelled 8.5 16
Fold:PTS system fructose IIA component-like
Superfamily:PTS system fructose IIA component-like
Family:EIIA-man component-like
50c1m8pB_
not modelled 8.4 27
PDB header:transferase
Chain: B: PDB Molecule:sulfate adenylyltransferase;
PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
51d1qx4a1
not modelled 8.3 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
52c5z2vB_
not modelled 8.2 17
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
53d1ndha1
not modelled 8.1 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
54c6o5lA_
not modelled 7.9 33
PDB header:dna binding protein
Chain: A: PDB Molecule:ppra;
PDBTitle: crystal structure of ppra filament from deinococcus peraridilitoris
55d2cnda1
not modelled 7.6 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
56c5lddA_
not modelled 7.6 30
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
57d1y8xb1
not modelled 7.2 17
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
58d1qfja1
not modelled 7.0 13
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
59c3s4rB_
not modelled 6.7 31
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
60c1b9xC_
not modelled 6.7 9
PDB header:signaling protein
Chain: C: PDB Molecule:protein (phosducin);
PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin
61c4x3iA_
not modelled 6.7 30
PDB header:signaling protein
Chain: A: PDB Molecule:activity-regulated cytoskeleton-associated protein;
PDBTitle: the crystal structure of arc n-lobe complexed with camk2a fragment
62d2fhqa1
not modelled 6.5 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
63d1y7ma1
not modelled 6.5 25
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
64c5uxmA_
not modelled 6.3 24
PDB header:transferase
Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase;
PDBTitle: type ii dah7ps from pseudomonas aeruginosa with trp bound
65c3lfhF_
not modelled 6.2 13
PDB header:transferase
Chain: F: PDB Molecule:phosphotransferase system, mannose/fructose-specific
PDBTitle: crystal structure of manxa from thermoanaerobacter tengcongensis
66c3dmbA_
not modelled 6.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
67d1qzma_
not modelled 6.2 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
68c2nbsA_
not modelled 6.1 14
PDB header:unknown function
Chain: A: PDB Molecule:e_1r26;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for designed2 protein e_1r26
69c2wtoB_
not modelled 6.0 31
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
70d1tipa_
not modelled 6.0 8
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
71c4gitA_
not modelled 5.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
72c5o1uB_
not modelled 5.7 8
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase;
PDBTitle: structure of wildtype t.maritima pde (tm1595) with amp and mn2+
73d2b7oa1
not modelled 5.7 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class-II DAHP synthetase
74c1xjqA_
not modelled 5.5 19
PDB header:transferase
Chain: A: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: adp complex of human paps synthetase 1
75c2oe0B_
not modelled 5.5 10
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin-3;
PDBTitle: crystal structure of mitochondrial thioredoxin 3 from2 saccharomyces cerevisiae
76c3v62F_
not modelled 5.4 50
PDB header:protein binding/dna binding protein
Chain: F: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
77c3v62C_
not modelled 5.4 50
PDB header:protein binding/dna binding protein
Chain: C: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
78c3i18A_
not modelled 5.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2051 protein;
PDBTitle: crystal structure of the pdz domain of the sdrc-like protein (lmo2051)2 from listeria monocytogenes, northeast structural genomics consortium3 target lmr166b
79c2acmA_
not modelled 5.2 14
PDB header:structural protein
Chain: A: PDB Molecule:mucin-1;
PDBTitle: solution structure of the sea domain of human mucin 1 (muc1)
80d1t6t1_
not modelled 5.2 15
Fold:Toprim domain
Superfamily:Toprim domain
Family:Toprim domain

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