Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2876_(-)_3187673_3187987
DateWed Aug 7 12:50:55 BST 2019
Unique Job ID6c83819b6f60ec54
SequenceMFGQWEFDVS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.463 Y:36.448 Z:56.388
Model (left) based on template c6adqP_
Top template information
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 77%
80 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6adqP_



100.0 61
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
2c2rmzA_



59.7 26
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
3c5n9yB_



59.1 22
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
4c4ev6E_



57.6 20
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
5c5zazA_



37.0 22
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
6c2ls2A_



35.4 40
PDB header:metal transport
Chain: A: PDB Molecule:high affinity copper uptake protein 1;
PDBTitle: 1h chemical shift assignments for the first transmembrane domain from2 human copper transport 1
7c2kncB_



33.9 26
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
8c2momB_



23.5 24
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
9c2momC_



23.4 24
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
10d1eu1a1



15.3 33
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
11c5iqjB_



14.5 33
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: 1.9 angstrom crystal structure of protein with unknown function from2 vibrio cholerae.
12c2d3aJ_



12.2 56
PDB header:ligase
Chain: J: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of the maize glutamine synthetase2 complexed with adp and methionine sulfoximine phosphate
13c4p5nB_



11.5 50
PDB header:structural genomics
Chain: B: PDB Molecule:hypothetical protein cnag_02591;
PDBTitle: structure of cnag_02591 from cryptococcus neoformans
14c2w2eA_



10.6 21
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
15c4baxH_



9.4 50
PDB header:ligase
Chain: H: PDB Molecule:glutamine synthetase;
PDBTitle: crystal structure of glutamine synthetase from streptomyces2 coelicolor
16c4is4G_



9.2 56
PDB header:ligase
Chain: G: PDB Molecule:glutamine synthetase;
PDBTitle: the glutamine synthetase from the dicotyledonous plant m. truncatula2 is a decamer
17c2xczA_



8.6 45
PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor homologue2 from prochlorococcus marinus
18c3gacD_



8.2 9
PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
19c6cuqB_



8.2 27
PDB header:cytokine
Chain: B: PDB Molecule:macrophage migration inhibitory factor-like protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor-like2 protein (ehmif) from entamoeba histolytica
20c4c84B_



7.8 27
PDB header:ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase znrf3;
PDBTitle: zebrafish znrf3 ectodomain crystal form i
21c3ug9A_



not modelled 7.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
22d1uiza_



not modelled 7.1 27
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
23c3njaC_



not modelled 6.5 22
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable ggdef family protein;
PDBTitle: the crystal structure of the pas domain of a ggdef family protein from2 chromobacterium violaceum atcc 12472.
24c3icfB_



not modelled 6.2 26
PDB header:hydrolase
Chain: B: PDB Molecule:serine/threonine-protein phosphatase t;
PDBTitle: structure of protein serine/threonine phosphatase from saccharomyces2 cerevisiae with similarity to human phosphatase pp5
25d1pq1a_



not modelled 6.1 19
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
26c2mkvA_



not modelled 5.9 21
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
27c1hznA_



not modelled 5.9 27
PDB header:hormone/growth factor
Chain: A: PDB Molecule:cholecystokinin type a receptor;
PDBTitle: nmr solution structure of the third extracellular loop of2 the cholecystokinin a receptor
28c5unqF_



not modelled 5.9 23
PDB header:hydrolase
Chain: F: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of pt0534 inactivated by 2-oxo-3-pentynoate
29c2mj2A_



not modelled 5.8 25
PDB header:viral protein
Chain: A: PDB Molecule:agnoprotein;
PDBTitle: structure of the dimerization domain of the human polyoma, jc virus2 agnoprotein is an amphipathic alpha-helix.
30c2os5C_



not modelled 5.8 9
PDB header:cytokine
Chain: C: PDB Molecule:acemif;
PDBTitle: macrophage migration inhibitory factor from ancylostoma ceylanicum
31c3rhtB_



not modelled 5.7 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
32d1dpta_



not modelled 5.6 18
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
33c2jo1A_



not modelled 5.5 38
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
34c2jp3A_



not modelled 5.5 25
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
35c6cfwI_



not modelled 5.4 25
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
36c2m59B_



not modelled 5.3 13
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
37c2m59A_



not modelled 5.3 13
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
38c2ks1A_



not modelled 5.3 17
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
39c2jwaA_



not modelled 5.3 17
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
40c4dh4A_



not modelled 5.2 9
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
41c3mk7F_



not modelled 5.2 16
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
42d1hfoa_



not modelled 5.2 18
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related

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Transmembrane helix prediction 

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