Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2881c_(cdsA)_3190711_3191631
DateThu Aug 8 16:20:03 BST 2019
Unique Job ID3b17d187cb4edae1
SequenceVTTNDAGTGN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.793 Y:61.157 Z:50.692
Model (left) based on template c4q2eA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s258c, active mutant)
Confidence and coverage
Confidence:100.0% Coverage: 82%
252 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4q2eA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s258c, active mutant)
2c4q2gA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:phosphatidate cytidylyltransferase;
PDBTitle: crystal structure of an intramembrane cdp-dag synthetase central for2 phospholipid biosynthesis (s200c/s223c, inactive mutant)
3c5gufA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:cdp-archaeol synthase;
PDBTitle: structural insight into an intramembrane enzyme for archaeal membrane2 lipids biosynthesis
4c3b9yA_



96.0 16
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
5c5aexJ_



88.2 12
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
6c5aexB_



85.3 17
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
7c2nuuF_



83.0 14
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
8c6eu6A_



77.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
9c3hd6A_



75.7 12
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
10c5aezA_



62.7 15
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
11c3r2uC_



61.7 22
PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: 2.1 angstrom resolution crystal structure of metallo-beta-lactamase2 from staphylococcus aureus subsp. aureus col
12d2p97a1



57.4 30
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Ava3068-like
13c2gcuD_



57.1 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative hydroxyacylglutathione hydrolase 3;
PDBTitle: x-ray structure of gene product from arabidopsis thaliana at1g53580
14c4chlA_



55.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:persulfide dioxygenase ethe1, mitochondrial;
PDBTitle: human ethylmalonic encephalopathy protein 1 (hethe1)
15c2xf4A_



54.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:hydroxyacylglutathione hydrolase;
PDBTitle: crystal structure of salmonella enterica serovar2 typhimurium ycbl
16c5ve5C_



54.1 12
PDB header:oxidoreductase, transferase
Chain: C: PDB Molecule:bpprf;
PDBTitle: crystal structure of persulfide dioxygenase rhodanese fusion protein2 with rhodanese domain inactivating mutation (c314s) from burkholderia3 phytofirmans in complex with glutathione
17c4yskA_



53.2 32
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase domain protein;
PDBTitle: crystal structure of apo-form sdoa from pseudomonas putida
18c2mc5A_



51.8 62
PDB header:protein binding
Chain: A: PDB Molecule:45l;
PDBTitle: a bacteriophage transcription regulator inhibits bacterial2 transcription initiation by -factor displacement
19c3tp9B_



50.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
20c4ysbB_



50.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of ethe1 from myxococcus xanthus
21c4efzB_



not modelled 50.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of a hypothetical metallo-beta-lactamase from2 burkholderia pseudomallei
22c2kogA_



not modelled 47.4 30
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
23d1mqoa_



not modelled 45.8 19
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
24d1qh5a_



not modelled 43.1 11
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
25c4ad9E_



not modelled 41.9 32
PDB header:hydrolase
Chain: E: PDB Molecule:beta-lactamase-like protein 2;
PDBTitle: crystal structure of human lactb2.
26c4awyB_



not modelled 41.9 12
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase aim-1;
PDBTitle: crystal structure of the mobile metallo-beta-lactamase aim-1 from2 pseudomonas aeruginosa: insights into antibiotic binding and the role3 of gln157
27d1xm8a_



not modelled 40.6 13
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
28c5sxpG_



not modelled 40.4 20
PDB header:signaling protein/ligase
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: structural basis for the interaction between itch prr and beta-pix
29d1u7ga_



not modelled 37.4 18
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter
30d2aioa1



not modelled 34.8 21
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
31d1znba_



not modelled 34.8 19
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
32d1bh9b_



not modelled 29.0 27
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
33c5i0pB_



not modelled 28.8 23
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase domain protein;
PDBTitle: crystal structure of a beta-lactamase domain protein from burkholderia2 ambifaria
34c6h0cA_



not modelled 28.6 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: flv1 flavodiiron core from synechocystis sp. pcc6803
35c3hnnD_



not modelled 28.5 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:putative diflavin flavoprotein a 5;
PDBTitle: crystal structure of putative diflavin flavoprotein a 5 (fragment 1-2 254) from nostoc sp. pcc 7120, northeast structural genomics3 consortium target nsr435a
36d2qeda1



not modelled 28.2 10
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Glyoxalase II (hydroxyacylglutathione hydrolase)
37c3c1iA_



not modelled 27.5 16
PDB header:transport protein
Chain: A: PDB Molecule:ammonia channel;
PDBTitle: substrate binding, deprotonation and selectivity at the periplasmic2 entrance of the e. coli ammonia channel amtb
38c2p18A_



not modelled 26.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:glyoxalase ii;
PDBTitle: crystal structure of the leishmania infantum glyoxalase ii
39c2zo4A_



not modelled 25.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of metallo-beta-lactamase family protein ttha14292 from thermus thermophilus hb8
40c1vmeB_



not modelled 23.8 17
PDB header:electron transport
Chain: B: PDB Molecule:flavoprotein;
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
41c5ja9D_



not modelled 23.1 42
PDB header:toxin
Chain: D: PDB Molecule:toxin higb-2;
PDBTitle: crystal structure of the higb2 toxin in complex with nb6
42c2zwrA_



not modelled 22.0 42
PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase superfamily protein;
PDBTitle: crystal structure of ttha1623 from thermus thermophilus hb8
43c4v0hC_



not modelled 21.4 41
PDB header:hydrolase
Chain: C: PDB Molecule:metallo-beta-lactamase domain-containing protein 1 1;
PDBTitle: human metallo beta lactamase domain containing protein 1 (hmblac1)
44d1m2xa_



not modelled 21.2 17
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
45d1ycga2



not modelled 20.8 15
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:ROO N-terminal domain-like
46c4wd6B_



not modelled 20.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystal structure of dim-1 metallo-beta-lactamase
47c6n36A_



not modelled 20.1 20
PDB header:ligase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: beta-lactamase from chitinophaga pinensis
48c3dh4A_



not modelled 20.0 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
49c3l6nA_



not modelled 19.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystal structure of metallo-beta-lactamase ind-7
50c5al6A_



not modelled 19.4 25
PDB header:structural protein
Chain: A: PDB Molecule:anastral spindle 2;
PDBTitle: central coiled-coil domain (cccd) of drosophila melanogaster ana2. a2 natural, parallel, tetrameric coiled-coil bundle.
51c2jpjA_



not modelled 19.1 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit alpha;
PDBTitle: lactococcin g-a in dpc
52c2jplA_



not modelled 19.1 40
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit alpha;
PDBTitle: lactococcin g-a in tfe
53c2q9uB_



not modelled 18.6 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:a-type flavoprotein;
PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
54c6oitG_



not modelled 18.5 25
PDB header:plant protein
Chain: G: PDB Molecule:protein chromatin remodeling 35;
PDBTitle: cryoem structure of arabidopsis ddr' complex (drd1 peptide-dms3-rdm1)
55c6aufB_



not modelled 18.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase-like protein;
PDBTitle: crystal structure of metalo beta lactamases mim-1 from novosphingobium2 pentaromativorans
56c3lvzA_



not modelled 17.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:blr6230 protein;
PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum
57c2yz3B_



not modelled 17.1 17
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor
58c5k0wA_



not modelled 17.0 7
PDB header:hydrolase
Chain: A: PDB Molecule:class b carbapenemase gob-18;
PDBTitle: crystal structure of the metallo-beta-lactamase gob-18 from2 elizabethkingia meningoseptica
59c6qrqB_



not modelled 17.0 18
PDB header:signaling protein
Chain: B: PDB Molecule:oxygen-binding diiron protein;
PDBTitle: apo conformation of chemotaxis sensor odp
60d1nxca_



not modelled 16.9 13
Fold:alpha/alpha toroid
Superfamily:Seven-hairpin glycosidases
Family:Class I alpha-1;2-mannosidase, catalytic domain
61d1dl2a_



not modelled 16.8 14
Fold:alpha/alpha toroid
Superfamily:Seven-hairpin glycosidases
Family:Class I alpha-1;2-mannosidase, catalytic domain
62c2kdcC_



not modelled 16.3 19
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
63c5aebA_



not modelled 16.1 4
PDB header:hydrolase
Chain: A: PDB Molecule:lra-12;
PDBTitle: crystal structure of the class b3 di-zinc metallo-beta-lactamase lra-2 12 from an alaskan soil metagenome.
64c2e55D_



not modelled 16.0 43
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of aq2163 protein from aquifex aeolicus
65c3bboU_



not modelled 15.6 22
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l22;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
66d2gmna1



not modelled 15.6 26
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
67d2ey4a2



not modelled 15.3 35
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
68c6ixhQ_



not modelled 15.3 17
PDB header:membrane protein
Chain: Q: PDB Molecule:type vi secretion system tssm;
PDBTitle: type vi secretion system membrane core complex
69c4binA_



not modelled 15.1 100
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase amic;
PDBTitle: crystal structure of the e. coli n-acetylmuramoyl-l-alanine amidase2 amic
70d2nn6h2



not modelled 14.9 33
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
71c1s1iN_



not modelled 14.7 33
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
72d2gycq1



not modelled 14.1 29
Fold:Ribosomal protein L22
Superfamily:Ribosomal protein L22
Family:Ribosomal protein L22
73d1ko3a_



not modelled 14.1 19
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Zn metallo-beta-lactamase
74c3pisA_



not modelled 13.5 63
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1;
PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1
75c3dmpD_



not modelled 13.4 38
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase from2 burkholderia pseudomallei
76c6dn4A_



not modelled 13.4 18
PDB header:metal binding protein
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: cronobacter sakazakii (enterobacter sakazakii) metallo-beta-lactamse2 harldq motif
77c5j72B_



not modelled 12.9 100
PDB header:hydrolase
Chain: B: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase,autolysin cwp6;
PDBTitle: cwp6 from clostridium difficile
78c3sd9B_



not modelled 12.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases
79c3u5eP_



not modelled 12.8 33
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
80d1jv1a_



not modelled 12.4 42
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
81d1i5ea_



not modelled 12.4 43
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
82c1ychD_



not modelled 12.3 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra. novel diiron2 site structure and mechanistic insights into a scavenging nitric3 oxide reductase
83d2icya2



not modelled 12.3 50
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:UDP-glucose pyrophosphorylase
84c3jywN_



not modelled 11.9 33
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l17(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
85d1k8wa5



not modelled 11.9 35
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
86c3zf7R_



not modelled 11.8 22
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l17, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
87c1k8wA_



not modelled 11.2 38
PDB header:lyase/rna
Chain: A: PDB Molecule:trna pseudouridine synthase b;
PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
88c5e38D_



not modelled 11.2 33
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structural basis of mapping the spontaneous mutations with 5-2 flourouracil in uracil phosphoribosyltransferase from mycobacterium3 tuberculosis
89c3oc9A_



not modelled 11.2 50
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase;
PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica
90c1e5dA_



not modelled 11.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase;
PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe desulfovibrio2 gigas
91c2fhxB_



not modelled 10.9 28
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:spm-1;
PDBTitle: pseudomonas aeruginosa spm-1 metallo-beta-lactamase
92d1sgva2



not modelled 10.8 30
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase II TruB
93c3zf7Y_



not modelled 10.8 44
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l24, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
94c3pesA_



not modelled 10.8 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein gp49;
PDBTitle: crystal structure of uncharacterized protein from pseudomonas phage2 yua
95c6cqsA_



not modelled 10.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: sediminispirochaeta smaragdinae sps-1 metallo-beta-lactamase
96c2zvrA_



not modelled 10.8 33
PDB header:isomerase
Chain: A: PDB Molecule:uncharacterized protein tm_0416;
PDBTitle: crystal structure of a d-tagatose 3-epimerase-related protein from2 thermotoga maritima
97c6nu9A_



not modelled 10.7 33
PDB header:viral protein
Chain: A: PDB Molecule:zinc-binding non-structural protein;
PDBTitle: crystal structure of a zinc-binding non-structural protein from the2 hepatitis e virus
98c3vqzA_



not modelled 10.7 7
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:metallo-beta-lactamase;
PDBTitle: crystal structure of metallo-beta-lactamase, smb-1, in a complex with2 mercaptoacetic acid
99c3fvyA_



not modelled 10.6 31
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidyl-peptidase 3;
PDBTitle: crystal structure of human dipeptidyl peptidase iii

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