Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2882c_(frr)_3191654_3192211
DateThu Aug 8 16:20:03 BST 2019
Unique Job ID4d1a6d3ba00fc6c4
SequenceMIDEALFDAE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.469 Y:37.496 Z:70.445
Model (left) based on template d1is1a_
Top template information
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
Confidence and coverage
Confidence:100.0% Coverage:100%
185 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1is1a_
100.0 44
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
2c4gfqA_
100.0 50
PDB header:translation
Chain: A: PDB Molecule:ribosome-recycling factor;
PDBTitle: 2.65 angstrom resolution crystal structure of ribosome recycling2 factor (frr) from bacillus anthracis
3d1ek8a_
100.0 40
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
4d1wqga1
100.0 100
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
5d1eh1a_
100.0 40
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
6d1dd5a_
100.0 40
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
7d1ge9a_
100.0 42
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
8c3lf9A_
100.0 44
PDB header:immune system
Chain: A: PDB Molecule:4e10_d0_1is1a_001_c (t161);
PDBTitle: crystal structure of hiv epitope-scaffold 4e10_d0_1is1a_001_c
9c4l8iA_
100.0 16
PDB header:immune system
Chain: A: PDB Molecule:rsv epitope scaffold ffl_005;
PDBTitle: crystal structure of rsv epitope scaffold ffl_005
10c1y698_
99.9 27
PDB header:ribosome
Chain: 8: PDB Molecule:ribosome-recycling factor;
PDB Fragment:unp residues 1-30 and 106-185; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans
11c5mlc9_
99.9 34
PDB header:ribosome
Chain: 9: PDB Molecule:ribosome-recycling factor, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
12d1wiha_
99.9 25
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:Ribosome recycling factor, RRF
Family:Ribosome recycling factor, RRF
13c5wp3B_
97.8 38
PDB header:gene regulation
Chain: B: PDB Molecule:eb22;
PDBTitle: crystal structure of eed in complex with eb22
14c4jlrS_
77.4 21
PDB header:immune system
Chain: S: PDB Molecule:rsv_1isea designed scaffold;
PDBTitle: crystal structure of a designed respiratory syncytial virus immunogen2 in complex with motavizumab
15c2rrnA_
67.0 15
PDB header:protein transport
Chain: A: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: solution structure of secdf periplasmic domain p4
16d1in0a2
66.7 23
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
17c2c1nA_
65.5 14
PDB header:signaling protein
Chain: A: PDB Molecule:14-3-3 protein zeta/delta;
PDBTitle: molecular basis for the recognition of phosphorylated and2 phosphoacetylated histone h3 by 14-3-3
18c1in0B_
60.0 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:yajq protein;
PDBTitle: yajq protein (hi1034)
19c3tufA_
55.4 22
PDB header:signaling protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: structure of the spoiiq-spoiiiah pore forming complex.
20c2npmB_
54.5 19
PDB header:protein binding
Chain: B: PDB Molecule:14-3-3 domain containing protein;
PDBTitle: crystal structure of cryptosporidium parvum 14-3-3 protein in complex2 with peptide
21d1o9da_
not modelled 54.1 21
Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
22c5b7wB_
not modelled 52.1 17
PDB header:unknown function
Chain: B: PDB Molecule:upf0234 protein xc_3703;
PDBTitle: crystal structure of the yajq-family protein xc_3703 from xanthomonas2 campestris pv.campestris
23d2o8pa1
not modelled 51.5 16
Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
24c3uz0A_
not modelled 51.0 22
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: crystal structure of spoiiiah and spoiiq complex
25d1iwga5
not modelled 49.4 19
Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
26c5ensA_
not modelled 49.1 18
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb,multidrug efflux pump
PDBTitle: rhodamine bound structure of bacterial efflux pump.
27d1iwga6
not modelled 47.0 16
Fold:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Superfamily:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
Family:Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
28c2kl8A_
not modelled 46.0 24
PDB header:de novo protein
Chain: A: PDB Molecule:or15;
PDBTitle: solution nmr structure of de novo designed ferredoxin-like fold2 protein, northeast structural genomics consortium target or15
29c3m20A_
not modelled 45.1 25
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
30c3ff5B_
not modelled 43.2 19
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
31d2o02a1
not modelled 40.8 15
Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
32c3htkA_
not modelled 39.7 23
PDB header:recombination/replication/ligase
Chain: A: PDB Molecule:structural maintenance of chromosomes protein 5;
PDBTitle: crystal structure of mms21 and smc5 complex
33c5k1rB_
not modelled 38.2 12
PDB header:lyase
Chain: B: PDB Molecule:burkholderia pseudomallei sphingosine-1-phosphate lyase
PDBTitle: structure of burkholderia pseudomallei k96243 sphingosine-1-phosphate2 lyase bpss2021
34c1j1dF_
not modelled 36.3 20
PDB header:contractile protein
Chain: F: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 46kda domain of human cardiac2 troponin in the ca2+ saturated form
35c6miwA_
not modelled 36.1 18
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase huwe1;
PDBTitle: wwe domain of human huwe1
36c3mafB_
not modelled 33.0 9
PDB header:lyase
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of stspl (asymmetric form)
37c4ovpB_
not modelled 32.4 8
PDB header:solute-binding protein
Chain: B: PDB Molecule:c4-dicarboxylate transport system substrate-binding
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfitobacter sp. nas-14.1, target efi-510292, with bound alpha-d-3 manuronate
38d1zh5a1
not modelled 32.1 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:La domain
39c5tw9D_
not modelled 31.6 14
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
40d1vcsa1
not modelled 29.7 25
Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
41c3gasA_
not modelled 28.4 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
42c1j1eF_
not modelled 27.9 21
PDB header:contractile protein
Chain: F: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
43d1zj8a1
not modelled 27.4 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
44c4o94B_
not modelled 26.2 8
PDB header:transport protein
Chain: B: PDB Molecule:trap dicarboxylate transporter dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodopseudomonas palustris haa2 (rpb_3329), target efi-510223, with3 bound succinate
45c4dl0J_
not modelled 24.9 32
PDB header:hydrolase
Chain: J: PDB Molecule:v-type proton atpase subunit e;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
46d1tz9a_
not modelled 24.9 10
Fold:TIM beta/alpha-barrel
Superfamily:Xylose isomerase-like
Family:UxuA-like
47c2k14A_
not modelled 24.7 6
PDB header:unknown function
Chain: A: PDB Molecule:yuaf protein;
PDBTitle: solution structure of the soluble domain of the nfed2 protein yuaf from bacillus subtilis
48d1lp1b_
not modelled 24.6 30
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
49d1fc2c_
not modelled 24.1 30
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
50c5j2lB_
not modelled 23.6 30
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
51c3bdkB_
not modelled 23.6 16
PDB header:lyase
Chain: B: PDB Molecule:d-mannonate dehydratase;
PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue
52d2arza1
not modelled 23.1 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c4pfrA_
not modelled 22.5 10
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 rhodobacter sphaeroides (rsph17029_3541, target efi-510203), apo open3 partially disordered
54d1deeg_
not modelled 22.4 15
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
55c4npfY_
not modelled 21.9 32
PDB header:protein binding
Chain: Y: PDB Molecule:immunoglobulin g-binding protein a;
PDBTitle: high-resolution structure of two tandem b domains of staphylococcal2 protein a connected by the conserved linker
56c1kmiZ_
not modelled 21.4 18
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
57d2jwda1
not modelled 20.9 18
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Bacterial immunoglobulin/albumin-binding domains
Family:Immunoglobulin-binding protein A modules
58c3onjA_
not modelled 20.3 21
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
59c1zdbA_
not modelled 19.8 32
PDB header:igg binding domain
Chain: A: PDB Molecule:mini protein a domain, z38;
PDBTitle: phage-selected mini protein a domain, z38, nmr, minimized2 mean structure
60c2pfzA_
not modelled 18.4 8
PDB header:transport protein
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
61c4eacC_
not modelled 18.4 10
PDB header:lyase
Chain: C: PDB Molecule:mannonate dehydratase;
PDBTitle: crystal structure of mannonate dehydratase from escherichia coli2 strain k12
62c1j1eC_
not modelled 18.0 19
PDB header:contractile protein
Chain: C: PDB Molecule:troponin i;
PDBTitle: crystal structure of the 52kda domain of human cardiac2 troponin in the ca2+ saturated form
63c3mc6C_
not modelled 17.9 12
PDB header:lyase
Chain: C: PDB Molecule:sphingosine-1-phosphate lyase;
PDBTitle: crystal structure of scdpl1
64c2i9zB_
not modelled 17.6 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative septation protein spovg;
PDBTitle: structural genomics, the crystal structure of full-length spovg from2 staphylococcus epidermidis atcc 12228
65d2i9xa1
not modelled 17.6 29
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
66c2b9bA_
not modelled 17.4 20
PDB header:viral protein
Chain: A: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the parainfluenza virus 5 f protein in its metastable,2 pre-fusion conformation
67c4hhuA_
not modelled 17.2 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:or280;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or280.
68d2dexx2
not modelled 16.8 43
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Peptidylarginine deiminase Pad4, N-terminal domain
69d2fqma1
not modelled 16.7 26
Fold:Phosphoprotein oligomerization domain-like
Superfamily:Phosphoprotein oligomerization domain-like
Family:Phosphoprotein oligomerization domain-like
70c2v8sV_
not modelled 15.2 24
PDB header:protein transport
Chain: V: PDB Molecule:vesicle transport through interaction with
PDBTitle: vti1b habc domain - epsinr enth domain complex
71d2f23a1
not modelled 15.0 15
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
72c4ovsB_
not modelled 14.6 10
PDB header:solute-binding protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 sulfurospirillum deleyianum dsm 6946 (sdel_0447), target efi-510309,3 with bound succinate
73c2pfyA_
not modelled 14.5 11
PDB header:transport protein
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of dctp7, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
74c3b50A_
not modelled 14.5 6
PDB header:transport protein
Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap;
PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
75c2etnA_
not modelled 14.0 17
PDB header:transcription
Chain: A: PDB Molecule:anti-cleavage anti-grea transcription factor
PDBTitle: crystal structure of thermus aquaticus gfh1
76c3fkkA_
not modelled 13.9 26
PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
77c4ovtA_
not modelled 13.3 14
PDB header:solute-binding protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 ochrobacterium anthropi (oant_3902), target efi-510153, with bound l-3 fuconate
78c2vpnB_
not modelled 13.2 11
PDB header:transport
Chain: B: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: high-resolution structure of the periplasmic ectoine-2 binding protein from teaabc trap-transporter of halomonas3 elongata
79d1whra_
not modelled 13.1 27
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
80c5ui3C_
not modelled 13.1 14
PDB header:lyase
Chain: C: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dhdps from chlamydomonas reinhardtii
81d2dula1
not modelled 13.0 14
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TRM1-like
82c3f9tB_
not modelled 12.8 14
PDB header:lyase
Chain: B: PDB Molecule:l-tyrosine decarboxylase mfna;
PDBTitle: crystal structure of l-tyrosine decarboxylase mfna (ec 4.1.1.25)2 (np_247014.1) from methanococcus jannaschii at 2.11 a resolution
83c3gyyC_
not modelled 12.8 10
PDB header:transport protein
Chain: C: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
84c3nqbB_
not modelled 12.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:adenine deaminase 2;
PDBTitle: crystal structure of adenine deaminase from agrobacterium tumefaciens2 (str. c 58)
85d2qsba1
not modelled 12.4 26
Fold:Bromodomain-like
Superfamily:Ta0600-like
Family:Ta0600-like
86c3b4uB_
not modelled 12.2 14
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
87c2m5wA_
not modelled 12.1 29
PDB header:rna binding protein
Chain: A: PDB Molecule:lupus la protein;
PDBTitle: nmr solution structure of the la motif (n-terminal domain, ntd) of2 dictyostelium discoideum la protein
88d2i52a1
not modelled 12.0 19
Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
89c2l5gB_
not modelled 11.8 24
PDB header:transcription regulator
Chain: B: PDB Molecule:putative uncharacterized protein ncor2;
PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207
90c4nq8B_
not modelled 11.7 14
PDB header:protein transport
Chain: B: PDB Molecule:putative periplasmic substrate-binding transport protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 bordetella bronchispeptica (bb3421), target efi-510039, with density3 modeled as pantoate
91c1x4rA_
not modelled 11.6 10
PDB header:apoptosis
Chain: A: PDB Molecule:parp14 protein;
PDBTitle: solution structure of wwe domain in parp14 protein
92d1lfup_
not modelled 11.6 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
93c4q6rB_
not modelled 11.6 8
PDB header:lyase/lyase inhibitor
Chain: B: PDB Molecule:sphingosine-1-phosphate lyase 1;
PDBTitle: crystal structure of human sphingosine-1-phosphate lyase in complex2 with inhibitor 6-[(2r)-4-(4-benzyl-7-chlorophthalazin-1-yl)-2-3 methylpiperazin-1-yl]pyridine-3-carbonitrile
94c4ng7A_
not modelled 11.3 14
PDB header:transport protein
Chain: A: PDB Molecule:trap periplasmic solute binding protein;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 citrobacter koseri (cko_04899), target efi-510094, apo, open3 structure
95c4r86B_
not modelled 11.3 19
PDB header:protein transport
Chain: B: PDB Molecule:rnd family aminoglycoside/multidrug efflux pump;
PDBTitle: crystal structure of aminoglycoside/multidrug efflux system acrd from2 salmonella typhimurium
96d2ieca1
not modelled 11.1 16
Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
97c3fxbB_
not modelled 11.0 6
PDB header:transport protein
Chain: B: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of the ectoine-binding protein ueha
98d1y13a_
not modelled 10.8 21
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:6-pyruvoyl tetrahydropterin synthase
99c3axtA_
not modelled 10.8 13
PDB header:transferase
Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase
PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine

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