Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2886c_(-)_3195555_3196442
DateThu Aug 8 16:20:03 BST 2019
Unique Job IDc53f88c74d8c42eb
SequenceMSRILTHVPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.618 Y:40.813 Z:52.256
Model (left) based on template c6dgbA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:is607 family transposase is1535;
PDBTitle: crystal structure of the c-terminal catalytic domain of is1535 tnpa,2 an is607-like serine recombinase
Confidence and coverage
Confidence:100.0% Coverage: 45%
133 residues ( 45% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6dgbA_



100.0 54
PDB header:hydrolase
Chain: A: PDB Molecule:is607 family transposase is1535;
PDBTitle: crystal structure of the c-terminal catalytic domain of is1535 tnpa,2 an is607-like serine recombinase
2c3lhkA_



99.9 24
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna binding protein mj0014;
PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii.
3c3lhfC_



99.9 36
PDB header:recombination
Chain: C: PDB Molecule:serine recombinase;
PDBTitle: the crystal structure of a serine recombinase from sulfolobus2 solfataricus to 2.3a
4c6dgcA_



99.9 32
PDB header:hydrolase
Chain: A: PDB Molecule:isc1926 tnpa c-terminal catalytic domain;
PDBTitle: crystal structure of the c-terminal catalytic domain of isc1926 tnpa,2 an is607-like serine recombinase
5d1gdta2



99.8 23
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
6c3bvpB_



99.8 19
PDB header:recombination
Chain: B: PDB Molecule:tp901-1 integrase;
PDBTitle: crystal structure of the n-terminal catalytic domain of tp901-12 integrase
7c3g13B_



99.8 15
PDB header:recombination
Chain: B: PDB Molecule:putative conjugative transposon recombinase;
PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile
8c3guvA_



99.8 17
PDB header:recombination
Chain: A: PDB Molecule:site-specific recombinase, resolvase family protein;
PDBTitle: crystal structure of a resolvase family site-specific recombinase from2 streptococcus pneumoniae
9c2gm4B_



99.8 24
PDB header:recombination, dna
Chain: B: PDB Molecule:transposon gamma-delta resolvase;
PDBTitle: an activated, tetrameric gamma-delta resolvase: hin chimaera bound to2 cleaved dna
10d2gm4a2



99.8 24
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
11c2mhcA_



99.7 19
PDB header:recombination
Chain: A: PDB Molecule:tnpx;
PDBTitle: nmr structure of the catalytic domain of the large serine resolvase2 tnpx
12c4bqqB_



99.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: protein crystal structure of the n-terminal and recombinase domains of2 the streptomyces temperate phage serine recombinase, fc31 integrase.
13c3ploX_



99.6 17
PDB header:recombination
Chain: X: PDB Molecule:dna-invertase;
PDBTitle: crystal structure of the fis-independent mutant of gin
14d2rsla_



99.6 24
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
15c3pkzK_



99.6 24
PDB header:recombination
Chain: K: PDB Molecule:recombinase sin;
PDBTitle: structural basis for catalytic activation of a serine recombinase
16c2r0qF_



99.5 21
PDB header:recombination/dna
Chain: F: PDB Molecule:putative transposon tn552 dna-invertase bin3;
PDBTitle: crystal structure of a serine recombinase- dna regulatory2 complex
17c4m6fA_



99.5 20
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-invertase;
PDBTitle: dimer of the g-segment invertase bound to a dna substrate
18d1hx7a_



99.5 26
Fold:Resolvase-like
Superfamily:Resolvase-like
Family:gamma,delta resolvase, catalytic domain
19d1pm6a_



82.7 28
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
20d1rh6a_



73.5 30
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Excisionase-like
21d1zl0a2



not modelled 70.5 17
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
22c4l92A_



not modelled 66.5 35
PDB header:viral protein
Chain: A: PDB Molecule:receptor binding protein;
PDBTitle: structure of the rbp from lactococcal phage 1358 in complex with 22 glcnac molecules
23c4j2nB_



not modelled 66.2 19
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
24c4j2nA_



not modelled 66.1 19
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
25d1ewqa2



not modelled 62.0 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
26c6r6kB_



not modelled 51.6 18
PDB header:protein transport
Chain: B: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: structure of a fpvc mutant from pseudomonas aeruginosa
27c3gp4B_



not modelled 49.9 24
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
28c3ndnC_



not modelled 49.7 20
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
29d2bcqa2



not modelled 49.1 29
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
30d1jmsa3



not modelled 47.4 43
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
31c2nvwB_



not modelled 45.5 9
PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
32c5i44E_



not modelled 44.7 24
PDB header:dna binding protein/dna
Chain: E: PDB Molecule:chromosome-anchoring protein raca;
PDBTitle: structure of raca-dna complex; p21 form
33c4yztA_



not modelled 44.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose hydrolase;
PDBTitle: crystal structure of a tri-modular gh5 (subfamily 4) endo-beta-1, 4-2 glucanase from bacillus licheniformis complexed with cellotetraose
34d2fmpa2



not modelled 42.5 21
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
35c4e5sC_



not modelled 42.3 15
PDB header:hydrolase
Chain: C: PDB Molecule:mccflike protein (ba_5613);
PDBTitle: crystal structure of mccflike protein (ba_5613) from bacillus2 anthracis str. ames
36d2auna2



not modelled 41.7 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
37c3hjtB_



not modelled 41.3 11
PDB header:cell adhesion, transport protein
Chain: B: PDB Molecule:lmb;
PDBTitle: structure of laminin binding protein (lmb) of streptococcus agalactiae2 a bifunctional protein with adhesin and metal transporting activity
38c1nvmB_



not modelled 41.2 21
PDB header:lyase/oxidoreductase
Chain: B: PDB Molecule:acetaldehyde dehydrogenase (acylating);
PDBTitle: crystal structure of a bifunctional aldolase-dehydrogenase :2 sequestering a reactive and volatile intermediate
39d2vana1



not modelled 41.0 21
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
40c1zrsB_



not modelled 40.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: wild-type ld-carboxypeptidase
41c5d88A_



not modelled 39.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:predicted protease of the collagenase family;
PDBTitle: the structure of the u32 peptidase mk0906
42c3crnA_



not modelled 39.0 12
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
43d2ctza1



not modelled 38.4 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
44d1v6ta_



not modelled 36.8 26
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
45d1pq4a_



not modelled 36.3 10
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:TroA-like
46d1t6ca1



not modelled 36.2 18
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
47c5ijgB_



not modelled 35.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:cys/met metabolism pyridoxal-phosphate-dependent enzyme;
PDBTitle: crystal structure of o-acetylhomoserine sulfhydrolase from brucella2 melitensis at 2.0 a resolution
48c1z4hA_



not modelled 35.0 21
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
49c6amaO_



not modelled 34.9 21
PDB header:dna binding protein/dna
Chain: O: PDB Molecule:putative dna-binding protein;
PDBTitle: structure of s. coelicolor/s. venezuelae bldc-smea-ssfa complex to2 3.09 angstrom
50d1u6za2



not modelled 34.3 10
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
51c5f1yA_



not modelled 34.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:mccc family protein;
PDBTitle: crystal structure of ba3275, the member of s66 family of serine2 peptidases
52c4r24B_



not modelled 33.2 14
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
53c1ng7A_



not modelled 33.0 14
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein [core protein p3a];
PDBTitle: the solution structure of the soluble domain of poliovirus2 3a protein
54d1ng7a_



not modelled 33.0 14
Fold:Soluble domain of poliovirus core protein 3a
Superfamily:Soluble domain of poliovirus core protein 3a
Family:Soluble domain of poliovirus core protein 3a
55c3cx3A_



not modelled 32.9 11
PDB header:metal binding protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure analysis of the streptococcus pneumoniae2 adcaii protein
56c4h1hB_



not modelled 32.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:lmo1638 protein;
PDBTitle: crystal structure of mccf homolog from listeria monocytogenes egd-e
57c2vz4A_



not modelled 32.4 17
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator tipa;
PDBTitle: the n-terminal domain of merr-like protein tipal bound to promoter dna
58c2jmlA_



not modelled 32.3 21
PDB header:transcription
Chain: A: PDB Molecule:dna binding domain/transcriptional regulator;
PDBTitle: solution structure of the n-terminal domain of cara repressor
59d1nvmb2



not modelled 30.4 30
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
60d2dfaa1



not modelled 29.9 29
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
61d1zgza1



not modelled 29.5 13
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
62d1q06a_



not modelled 29.5 17
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
63c2cb1A_



not modelled 29.1 21
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
64c1ewrA_



not modelled 28.7 14
PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of taq muts
65c2nmpC_



not modelled 28.6 18
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
66c4s3rA_



not modelled 28.4 6
PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: amylomaltase malq from escherichia coli in complex with the pseudo-2 heptasaccharide acarviosine-glucose-acarbose
67c3c2qA_



not modelled 27.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized conserved protein;
PDBTitle: crystal structure of conserved putative lor/sdh protein2 from methanococcus maripaludis s2
68c1y6uA_



not modelled 27.5 7
PDB header:dna binding protein
Chain: A: PDB Molecule:excisionase from transposon tn916;
PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases
69c2kg4A_



not modelled 26.4 17
PDB header:cell cycle
Chain: A: PDB Molecule:growth arrest and dna-damage-inducible protein gadd45
PDBTitle: three-dimensional structure of human gadd45alpha in solution by nmr
70c2ps3A_



not modelled 26.0 11
PDB header:metal transport
Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua;
PDBTitle: structure and metal binding properties of znua, a periplasmic zinc2 transporter from escherichia coli
71c2zq0B_



not modelled 25.1 12
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-glucosidase (alpha-glucosidase susb);
PDBTitle: crystal structure of susb complexed with acarbose
72c6pdmA_



not modelled 24.5 15
PDB header:transferase
Chain: A: PDB Molecule:protein arginine n-methyltransferase 9;
PDBTitle: crystal structure of human protein arginine methyltransferase 92 (prmt9)
73c2ov3A_



not modelled 24.4 14
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein component of an abc type zinc
PDBTitle: crystal structure of 138-173 znua deletion mutant plus zinc bound
74c3htkA_



not modelled 23.9 32
PDB header:recombination/replication/ligase
Chain: A: PDB Molecule:structural maintenance of chromosomes protein 5;
PDBTitle: crystal structure of mms21 and smc5 complex
75c5xfmD_



not modelled 23.7 11
PDB header:hydrolase
Chain: D: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of beta-arabinopyranosidase
76c3hh0C_



not modelled 23.2 12
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of a transcriptional regulator, merr family from2 bacillus cereus
77c3bd1B_



not modelled 23.0 33
PDB header:transcription
Chain: B: PDB Molecule:cro protein;
PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1
78c8iczA_



not modelled 22.8 21
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
79c3g23A_



not modelled 22.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:ld-carboxypeptidase a;
PDBTitle: crystal structure of a ld-carboxypeptidase a (saro_1426) from2 novosphingobium aromaticivorans dsm at 1.89 a resolution
80c3oqbF_



not modelled 22.5 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
81c3pp5A_



not modelled 22.3 45
PDB header:structural protein
Chain: A: PDB Molecule:brk1;
PDBTitle: high-resolution structure of the trimeric scar/wave complex precursor2 brk1
82c2a93B_



not modelled 22.3 28
PDB header:leucine zippers
Chain: B: PDB Molecule:c-myc-max heterodimeric leucine zipper;
PDBTitle: nmr solution structure of the c-myc-max heterodimeric2 leucine zipper, 40 structures
83c3gx1A_



not modelled 22.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1832 protein;
PDBTitle: crystal structure of a domain of lin1832 from listeria innocua
84c6hmvB_



not modelled 21.7 10
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-d68 (fusion protein, lvvy mutant)
85c1kdhA_



not modelled 21.3 27
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
86c3a24A_



not modelled 21.2 8
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of bt1871 retaining glycosidase
87d1s0ya_



not modelled 21.2 26
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
88c6hqaK_



not modelled 21.2 29
PDB header:transcription
Chain: K: PDB Molecule:subunit (61/68 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
89c4r4eA_



not modelled 21.0 15
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
90c3qaoA_



not modelled 21.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:merr-like transcriptional regulator;
PDBTitle: the crystal structure of the n-terminal domain of a merr-like2 transcriptional regulator from listeria monocytogenes egd-e
91d1a9xa2



not modelled 20.7 11
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
92c5z6vA_



not modelled 20.4 19
PDB header:protein transport
Chain: A: PDB Molecule:abc-type uncharacterized transport system periplasmic
PDBTitle: crystal structure of a substrate-binding protein from rhodothermus2 marinus
93c3p8cE_



not modelled 20.4 30
PDB header:protein binding
Chain: E: PDB Molecule:probable protein brick1;
PDBTitle: structure and control of the actin regulatory wave complex
94c6hlwB_



not modelled 20.4 7
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
95c2w9mB_



not modelled 20.3 14
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
96c1nomA_



not modelled 20.2 14
PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
97c2floA_



not modelled 19.8 10
PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
98c3fmfA_



not modelled 19.3 15
PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
99c6hltD_



not modelled 19.3 0
PDB header:viral protein
Chain: D: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)

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