Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2888c_(amiC)_3196874_3198295
DateThu Aug 8 16:20:04 BST 2019
Unique Job IDfba73148335fd126
SequenceMSRVHAFVDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.364 Y:62.891 Z:53.384
Model (left) based on template c3h0rP_
Top template information
PDB header:ligase
Chain: P: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
Confidence and coverage
Confidence:100.0% Coverage: 95%
450 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h0rP_



100.0 24
PDB header:ligase
Chain: P: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
2d2f2aa1



100.0 23
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
3c4wj3A_



100.0 24
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
4c6diiH_



100.0 23
PDB header:hydrolase
Chain: H: PDB Molecule:fatty acid amide hydrolase;
PDBTitle: structure of arabidopsis fatty acid amide hydrolase in complex with2 methyl linolenyl fluorophosphonate
5c4gysA_



100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
6c3kfuE_



100.0 27
PDB header:ligase/rna
Chain: E: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the transamidosome
7c3a2qA_



100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-cyclic-dimer hydrolase;
PDBTitle: structure of 6-aminohexanoate cyclic dimer hydrolase complexed with2 substrate
8d1mt5a_



100.0 23
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
9c2vyaB_



100.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:fatty-acid amide hydrolase 1;
PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750
10c5h6sB_



100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
11c5h6tB_



100.0 22
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
12c4cp8C_



100.0 25
PDB header:hydrolase
Chain: C: PDB Molecule:allophanate hydrolase;
PDBTitle: structure of the amidase domain of allophanate hydrolase2 from pseudomonas sp strain adp
13d1m22a_



100.0 26
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
14c6c6gA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:biuret hydrolase;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme. inhibitor bound complex.
15c2dc0A_



100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:probable amidase;
PDBTitle: crystal structure of amidase
16c4yj6A_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:aryl acylamidase;
PDBTitle: the crystal structure of a bacterial aryl acylamidase belonging to the2 amidase signature (as) enzymes family
17d2gi3a1



100.0 24
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
18d1ocka_



100.0 24
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
19c3a1iA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure of rhodococcus sp. n-771 amidase complexed2 with benzamide
20c4issA_



100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: semet-substituted kluyveromyces lactis allophanate hydrolase
21c5i8iD_



not modelled 100.0 20
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
22c5ewqC_



not modelled 100.0 19
PDB header:hydrolase
Chain: C: PDB Molecule:amidase;
PDBTitle: the crystal structure of an amidase family protein from bacillus2 anthracis str. ames
23c4n0hA_



not modelled 100.0 23
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
24d1sknp_



not modelled 37.6 3
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
25c1ijgE_



not modelled 32.0 13
PDB header:viral protein
Chain: E: PDB Molecule:upper collar protein;
PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein
26c2lz1A_



not modelled 30.7 17
PDB header:transcription
Chain: A: PDB Molecule:nuclear factor erythroid 2-related factor 2;
PDBTitle: solution nmr structure of the dna-binding domain of human nf-e2-2 related factor 2, northeast structural genomics consortium (nesg)3 target hr3520o
27d1w53a_



not modelled 29.1 9
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
28c2kz5A_



not modelled 29.0 10
PDB header:transcription
Chain: A: PDB Molecule:transcription factor nf-e2 45 kda subunit;
PDBTitle: solution nmr structure of transcription factor nf-e2 subunit's dna2 binding domain from homo sapiens, northeast structural genomics3 consortium target hr4653b
29c3r4kD_



not modelled 27.6 20
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
30c2zshA_



not modelled 27.2 17
PDB header:hormone receptor
Chain: A: PDB Molecule:probable gibberellin receptor gid1l1;
PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor
31d1h5wa_



not modelled 26.6 15
Fold:Upper collar protein gp10 (connector protein)
Superfamily:Upper collar protein gp10 (connector protein)
Family:Upper collar protein gp10 (connector protein)
32d1h1js_



not modelled 25.8 14
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
33c1zrjA_



not modelled 24.8 11
PDB header:dna binding protein
Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c;
PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c
34c5tjjA_



not modelled 24.7 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
35d2dloa2



not modelled 24.5 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
36c2kvuA_



not modelled 24.3 13
PDB header:transcription regulator
Chain: A: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e
37c2do1A_



not modelled 22.2 17
PDB header:gene regulation
Chain: A: PDB Molecule:nuclear protein hcc-1;
PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1
38d4pfka_



not modelled 22.0 19
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
39c5xoeA_



not modelled 20.4 20
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
40c4m1eC_



not modelled 20.1 15
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
41d2do1a1



not modelled 19.8 17
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
42c4g4sP_



not modelled 19.5 20
PDB header:hydrolase/chaperone
Chain: P: PDB Molecule:proteasome assembly chaperone 2;
PDBTitle: structure of proteasome-pba1-pba2 complex
43c1zxxA_



not modelled 19.3 20
PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
44d1zrja1



not modelled 19.3 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
45c4e94A_



not modelled 19.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:mccc family protein;
PDBTitle: crystal structure of mccf-like protein from streptococcus pneumoniae
46c2na9A_



not modelled 19.1 25
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
47c2na8A_



not modelled 18.5 25
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
48c4l5cE_



not modelled 18.4 13
PDB header:transferase
Chain: E: PDB Molecule:s-methyl-5'-thioadenosine phosphorylase;
PDBTitle: methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
49c4lnaA_



not modelled 17.1 15
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from spirosoma2 linguale dsm 74, nysgrc target 029362
50c5f1yA_



not modelled 16.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:mccc family protein;
PDBTitle: crystal structure of ba3275, the member of s66 family of serine2 peptidases
51c6iczX_



not modelled 16.1 29
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
52d1k1va_



not modelled 16.0 12
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
53d1q7ra_



not modelled 15.9 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
54d1q23a_



not modelled 15.5 16
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
55c4nsnC_



not modelled 15.5 12
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from2 porphyromonas gingivalis atcc 33277, nysgrc target 030972,3 orthorhombic symmetry
56c5y6iB_



not modelled 15.3 20
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
57c3ilvA_



not modelled 15.1 10
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
58c4uc0A_



not modelled 15.1 15
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
59c2obxH_



not modelled 14.8 26
PDB header:transferase
Chain: H: PDB Molecule:6,7-dimethyl-8-ribityllumazine synthase 1;
PDBTitle: lumazine synthase ribh2 from mesorhizobium loti (gene mll7281, swiss-2 prot entry q986n2) complexed with inhibitor 5-nitro-6-(d-3 ribitylamino)-2,4(1h,3h) pyrimidinedione
60c3d3oA_



not modelled 14.2 26
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator, icir family;
PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1
61c2hkeB_



not modelled 13.9 26
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative;
PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei
62c2kveA_



not modelled 13.8 12
PDB header:hormone
Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor;
PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf)
63c4e5sC_



not modelled 13.7 23
PDB header:hydrolase
Chain: C: PDB Molecule:mccflike protein (ba_5613);
PDBTitle: crystal structure of mccflike protein (ba_5613) from bacillus2 anthracis str. ames
64c3zyqA_



not modelled 13.6 14
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
65d1v8ba2



not modelled 13.2 6
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
66c2iv3B_



not modelled 13.1 34
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of avigt4, a glycosyltransferase involved2 in avilamycin a biosynthesis
67d1ggaa2



not modelled 12.7 20
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
68c1dvpA_



not modelled 12.5 13
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
69c2vvdA_



not modelled 12.0 44
PDB header:viral protein
Chain: A: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the receptor binding domain of the2 spike protein p1 from bacteriophage pm2
70c6gngB_



not modelled 11.6 23
PDB header:transferase
Chain: B: PDB Molecule:granule-bound starch synthase;
PDBTitle: granule bound starch synthase i from cyanophora paradoxa bound to2 acarbose and adp
71d2auna2



not modelled 11.6 16
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:LD-carboxypeptidase A N-terminal domain-like
72c6njyB_



not modelled 11.6 28
PDB header:rna binding protein
Chain: B: PDB Molecule:type iv crispr associated cas6 rna endonuclease;
PDBTitle: type iv crispr associated rna endonuclease cas6 - apo form
73c2wnsB_



not modelled 11.1 10
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp)
74d1pfka_



not modelled 10.6 19
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
75d3claa_



not modelled 10.6 17
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
76d1c41a_



not modelled 10.4 15
Fold:Lumazine synthase
Superfamily:Lumazine synthase
Family:Lumazine synthase
77d2b4ro2



not modelled 10.3 13
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
78d2g82a2



not modelled 10.1 16
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
79c2j6yB_



not modelled 10.0 9
PDB header:hydrolase
Chain: B: PDB Molecule:phosphoserine phosphatase rsbu;
PDBTitle: structural and functional characterisation of partner switching2 regulating the environmental stress response in bacillus subtilis
80c3nm3D_



not modelled 9.9 12
PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
81c2g7uB_



not modelled 9.8 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
82d2h5na1



not modelled 9.7 20
Fold:TerB-like
Superfamily:TerB-like
Family:PG1108-like
83c3tlgB_



not modelled 9.7 14
PDB header:hydrolase
Chain: B: PDB Molecule:mccf;
PDBTitle: microcin c7 self immunity protein mccf in the inactive mutant apo2 state
84c2vveB_



not modelled 9.7 44
PDB header:viral protein
Chain: B: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2
85d1li4a2



not modelled 9.5 7
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
86c1uasA_



not modelled 9.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
87c4gicB_



not modelled 9.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
88d2hi6a1



not modelled 8.8 42
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:LeuD/IlvD-like
Family:AF0055-like
89c4gi5B_



not modelled 8.6 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:quinone reductase;
PDBTitle: crystal structure of a putative quinone reductase from klebsiella2 pneumoniae (target psi-013613)
90c2w0cL_



not modelled 8.3 44
PDB header:virus
Chain: L: PDB Molecule:protein 2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
91c5ulbA_



not modelled 8.3 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter from yersinia2 enterocolitica subsp. enterocolitica 8081
92c2i9dC_



not modelled 8.1 11
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
93c3d7rB_



not modelled 8.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:esterase;
PDBTitle: crystal structure of a putative esterase from staphylococcus aureus
94c5ifkC_



not modelled 8.1 17
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: purine nucleoside phosphorylase
95c6aphA_



not modelled 8.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of adenosylhomocysteinase from elizabethkingia2 anophelis nuhp1 in complex with nad and adenosine
96d1uasa2



not modelled 7.8 12
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97c3ndqA_



not modelled 7.8 11
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: structure of human tfiis domain ii
98c3hgkE_



not modelled 7.8 10
PDB header:transferase
Chain: E: PDB Molecule:effector protein hopab2;
PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto
99d1u1ha1



not modelled 7.8 11
Fold:TIM beta/alpha-barrel
Superfamily:UROD/MetE-like
Family:Cobalamin-independent methionine synthase

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Transmembrane helix prediction 

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