Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2889c_(tsf)_3198302_3199117
DateThu Aug 8 16:20:04 BST 2019
Unique Job ID89a9399bdde394b7
SequenceMANFTAADVK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:73.443 Y:71.940 Z:44.225
Model (left) based on template c1efuB_
Top template information
PDB header:complex (two elongation factors)
Chain: B: PDB Molecule:elongation factor ts;
PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 95%
257 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1efuB_



100.0 41
PDB header:complex (two elongation factors)
Chain: B: PDB Molecule:elongation factor ts;
PDBTitle: elongation factor complex ef-tu/ef-ts from escherichia coli
2c3mmpC_



100.0 41
PDB header:transferase
Chain: C: PDB Molecule:elongation factor tu 2, elongation factor ts;
PDBTitle: structure of the qb replicase, an rna-dependent rna polymerase2 consisting of viral and host proteins
3c3agqA_



100.0 42
PDB header:translation,transferase
Chain: A: PDB Molecule:elongation factor ts, elongation factor tu 1, linker, q
PDBTitle: structure of viral polymerase form ii
4c1xb2B_



100.0 28
PDB header:translation
Chain: B: PDB Molecule:elongation factor ts, mitochondrial;
PDBTitle: crystal structure of bos taurus mitochondrial elongation2 factor tu/ts complex
5c1aipG_



100.0 56
PDB header:complex of two elongation factors
Chain: G: PDB Molecule:elongation factor ts;
PDBTitle: ef-tu ef-ts complex from thermus thermophilus
6d1efub2



100.0 34
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
7d1tfea_



100.0 41
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
8d1xb2b2



99.9 31
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
9d1efub4



99.9 46
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
10d1xb2b3



99.9 26
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
11d1efub3



99.8 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TS-N domain
12d1aipc1



99.8 45
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TS-N domain
13d1xb2b1



99.8 27
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TS-N domain
14d2cp9a1



99.7 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TS-N domain
15c2mroB_



97.0 33
PDB header:transport protein/signaling protein
Chain: B: PDB Molecule:dna damage-inducible protein 1;
PDBTitle: structure of the complex of ubiquitin and the uba domain from dna-2 damage-inducible 1 protein (ddi1)
16d1ifya_



96.8 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
17c1tr8A_



96.7 31
PDB header:chaperone
Chain: A: PDB Molecule:conserved protein (mth177);
PDBTitle: crystal structure of archaeal nascent polypeptide-associated complex2 (aenac)
18d1wiva_



96.5 23
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
19d1vega_



96.4 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
20c2lvaA_



96.1 35
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 28;
PDBTitle: nmr solution structure of the n-terminal domain of human usp28,2 northeast structural genomics consortium target ht8470a
21c2lbcA_



not modelled 96.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 13;
PDBTitle: solution structure of tandem uba of usp13
22c2daiA_



not modelled 96.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquitin associated domain containing 1;
PDBTitle: solution structure of the first uba domain in the human2 ubiquitin associated domain containing 1 (ubadc1)
23c2muxA_



not modelled 96.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 25;
PDBTitle: sumo2 non-covalently interacts with usp25 and downregulates its2 activity
24c2dakA_



not modelled 95.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
25c2dagA_



not modelled 95.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the first uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
26c1wr1B_



not modelled 94.9 17
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
27d1whca_



not modelled 94.7 21
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
28d1veja1



not modelled 94.7 37
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
29c2jy5A_



not modelled 94.7 28
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
30c2dahA_



not modelled 94.6 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-3;
PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
31c2cpwA_



not modelled 94.6 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cbl-interacting protein sts-1 variant;
PDBTitle: solution structure of rsgi ruh-031, a uba domain from human2 cdna
32d1oqya1



not modelled 94.6 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
33d1wj7a1



not modelled 94.6 34
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
34c2cwbA_



not modelled 94.3 25
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
35d2dnaa1



not modelled 94.2 26
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
36d1veka_



not modelled 94.1 22
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
37c2dnaA_



not modelled 94.1 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
38d2bwba1



not modelled 94.0 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
39d2daha1



not modelled 93.6 36
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
40d2cpwa1



not modelled 93.5 32
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
41d2crna1



not modelled 93.1 25
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
42c2crnA_



not modelled 92.6 19
PDB header:immune system
Chain: A: PDB Molecule:ubash3a protein;
PDBTitle: solution structure of the uba domain of human ubash3a2 protein
43c2qsfX_



not modelled 91.2 24
PDB header:dna binding protein
Chain: X: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of the rad4-rad23 complex
44d1vdla_



not modelled 91.1 32
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
45d1v92a_



not modelled 91.0 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
46d2g3qa1



not modelled 90.7 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
47d1oaia_



not modelled 89.4 9
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
48c6exzA_



not modelled 88.9 9
PDB header:transport protein
Chain: A: PDB Molecule:mrna export factor mex67;
PDBTitle: crystal structure of mex67 c-term
49c2damA_



not modelled 87.8 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:etea protein;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human etea protein
50c2jp7A_



not modelled 87.4 9
PDB header:translation
Chain: A: PDB Molecule:mrna export factor mex67;
PDBTitle: nmr structure of the mex67 uba domain
51c2dalA_



not modelled 86.6 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein kiaa0794;
PDBTitle: solution structure of the novel identified uba-like domain2 in the n-terminal of human fas associated factor 1 protein
52c6opfA_



not modelled 86.3 23
PDB header:rna binding protein
Chain: A: PDB Molecule:nuclear rna export factor 2, panoramix fusion;
PDBTitle: crystal structure of dmnxf2 uba domain fused with panoramix helix
53d1go5a_



not modelled 86.3 11
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:TAP-C domain-like
54c2do6A_



not modelled 86.1 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of rsgi ruh-065, a uba domain from human2 cdna
55c2d9sA_



not modelled 85.6 22
PDB header:ligase
Chain: A: PDB Molecule:cbl e3 ubiquitin protein ligase;
PDBTitle: solution structure of rsgi ruh-049, a uba domain from mouse2 cdna
56c4dbgB_



not modelled 84.5 22
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
57d1oqya2



not modelled 84.1 18
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
58c4wp2D_



not modelled 84.1 9
PDB header:transport protein
Chain: D: PDB Molecule:putative mrna export protein;
PDBTitle: chaetomium mex67 uba domain
59c3bq3A_



not modelled 82.3 12
PDB header:cell cycle, ligase
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: crystal structure of s. cerevisiae dcn1
60c2jnhA_



not modelled 79.9 26
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
61d1dd3a2



not modelled 77.1 28
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
62d1ctfa_



not modelled 68.8 28
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
63c4ae4B_



not modelled 65.9 26
PDB header:protein transport
Chain: B: PDB Molecule:ubiquitin-associated protein 1;
PDBTitle: the ubap1 subunit of escrt-i interacts with ubiquitin via a novel2 souba domain
64d2zjq51



not modelled 64.1 26
Fold:ClpS-like
Superfamily:ClpS-like
Family:Ribosomal protein L7/12, C-terminal domain
65c2zjq5_



not modelled 64.1 26
PDB header:ribosome
Chain: 5: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: interaction of l7 with l11 induced by microccocin binding to the2 deinococcus radiodurans 50s subunit
66c1giyJ_



not modelled 62.0 28
PDB header:ribosome
Chain: J: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of the ribosome at 5.5 a resolution. this2 file, 1giy, contains the 50s ribosome subunit. the 30s3 ribosome subunit, three trna, and mrna molecules are in the4 file 1gix
67d1z96a1



not modelled 60.5 36
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
68d1dv0a_



not modelled 56.1 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
69d1wjia_



not modelled 52.6 28
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
70c6deeA_



not modelled 49.4 22
PDB header:endocytosis
Chain: A: PDB Molecule:nck-interacting protein with sh3 domain;
PDBTitle: crystal structure of the c-terminus of homo sapiens spin90 (sh3-2 protein interacting with nck), residues 306-722
71c3k6gA_



not modelled 47.9 14
PDB header:protein binding
Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1;
PDBTitle: crystal structure of rap1 and trf2 complex
72c2ftcF_



not modelled 37.8 14
PDB header:ribosome
Chain: F: PDB Molecule:39s ribosomal protein l12, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
73d1wgla_



not modelled 35.1 19
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:CUE domain
74c5nnpG_



not modelled 34.1 32
PDB header:transferase
Chain: G: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of naa15/naa10 bound to hypk-thb
75c5uoiA_



not modelled 32.0 18
PDB header:de novo protein
Chain: A: PDB Molecule:hhh_rd1_0142;
PDBTitle: solution structure of the de novo mini protein hhh_rd1_0142
76c2l4fA_



not modelled 30.0 12
PDB header:protein binding
Chain: A: PDB Molecule:defective in cullin neddylation protein 1;
PDBTitle: nmr structure of the uba domain of s. cerevisiae dcn1 bound to2 ubiquitin
77d2qswa1



not modelled 29.0 31
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
78d1fipa_



not modelled 27.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
79c2dhyA_



not modelled 26.6 11
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
80d3dhxa1



not modelled 23.8 23
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
81c2gya3_



not modelled 23.2 24
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: structure of the 50s subunit of a pre-translocational e. coli ribosome2 obtained by fitting atomic models for rna and protein components into3 cryo-em map emd-1056
82c2ndpA_



not modelled 22.1 15
PDB header:dna binding protein
Chain: A: PDB Molecule:histone-like dna-binding superfamily protein;
PDBTitle: structure of dna-binding hu protein from micoplasma mycoplasma2 gallisepticum
83c3cz6A_



not modelled 21.2 20
PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: crystal structure of the rap1 c-terminus
84c4xhtD_



not modelled 20.8 24
PDB header:replication
Chain: D: PDB Molecule:protein timeless homolog;
PDBTitle: crystal structure of timeless_pab domain native form
85c2m8gX_



not modelled 20.5 28
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
86c3fmyA_



not modelled 19.5 4
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
87c5vnyA_



not modelled 18.8 21
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:lethal (2) giant discs 1, isoform b;
PDBTitle: crystal structure of dm14-3 domain of lgd
88c4kdhe_



not modelled 16.8 35
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l3;
PDBTitle: 70s ribosome translocation intermediate fa-4.2a containing elongation2 factor efg/fusidic acid/gdp, mrna, and trna bound in the pe*/e state.3 this entry contains the 50s ribosomal subunit a. the 30s subunit a4 can be found in 4kdg. molecule b in the same asymmetric unit is5 deposited as 4kdj (30s) and 4kdk (50s).
89c2kjgA_



not modelled 16.4 28
PDB header:metal binding protein
Chain: A: PDB Molecule:archaeal protein sso6904;
PDBTitle: solution structure of an archaeal protein sso6904 from2 hyperthermophilic sulfolobus solfataricus
90d2cosa1



not modelled 16.2 26
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
91c4q2jA_



not modelled 15.8 18
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: a novel structure-based mechanism for dna-binding of satb1
92c3c4mC_



not modelled 15.7 71
PDB header:membrane protein
Chain: C: PDB Molecule:parathyroid hormone;
PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)
93c3c4mD_



not modelled 15.7 71
PDB header:membrane protein
Chain: D: PDB Molecule:parathyroid hormone;
PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)
94d1zhva2



not modelled 15.4 27
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Atu0741-like
95d1etob_



not modelled 15.2 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
96c3k1sE_



not modelled 15.1 26
PDB header:transferase
Chain: E: PDB Molecule:pts system, cellobiose-specific iia component;
PDBTitle: crystal structure of the pts cellobiose specific enzyme iia from2 bacillus anthracis
97d2qrra1



not modelled 14.9 38
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
98d1hsta_



not modelled 14.9 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Linker histone H1/H5
99c4kbue_



not modelled 14.6 35
PDB header:ribosome/antibiotic
Chain: E: PDB Molecule:50s ribosomal protein l3;
PDBTitle: 70s ribosome translocation intermediate gdpnp-ii containing elongation2 factor efg/gdpnp, mrna, and trna bound in the pe*/e state. this entry3 contains 50s ribosomal subunit a. the full asymmetric unit also4 contains pdb entries 4kbt (30s subunit a), 4kbv (30s subunit b), and5 4kbw (50s subunit b).

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