1 c5hxyE_
100.0
26
PDB header: recombinationChain: E: PDB Molecule: tyrosine recombinase xera;PDBTitle: crystal structure of xera recombinase
2 c5vfzA_
100.0
24
PDB header: dna binding proteinChain: A: PDB Molecule: gp33;PDBTitle: integrase from mycobacterium phage brujita
3 c5jjvA_
100.0
19
PDB header: recombinationChain: A: PDB Molecule: tyrosine recombinase xerh;PDBTitle: crystal structure of xerh site-specific recombinase bound to2 palindromic difh substrate: post-cleavage complex
4 c1ma7A_
100.0
12
PDB header: hydrolase, ligase/dnaChain: A: PDB Molecule: cre recombinase;PDBTitle: crystal structure of cre site-specific recombinase2 complexed with a mutant dna substrate, loxp-a8/t27
5 c1crxA_
100.0
11
PDB header: replication/dnaChain: A: PDB Molecule: cre recombinase;PDBTitle: cre recombinase/dna complex reaction intermediate i
6 c1a0pA_
100.0
39
PDB header: dna recombinationChain: A: PDB Molecule: site-specific recombinase xerd;PDBTitle: site-specific recombinase, xerd
7 c6en2A_
100.0
20
PDB header: recombinationChain: A: PDB Molecule: int protein;PDBTitle: structure of the tn1549 transposon integrase (aa 82-397, r225k) in2 complex with a circular intermediate dna (ci6b-dna)
8 c2a3vA_
100.0
24
PDB header: recombinationChain: A: PDB Molecule: site-specific recombinase inti4;PDBTitle: structural basis for broad dna-specificity in integron recombination
9 c4a8eA_
100.0
26
PDB header: cell cycleChain: A: PDB Molecule: probable tyrosine recombinase xerc-like;PDBTitle: the structure of a dimeric xer recombinase from archaea
10 d1p7da_
100.0
19
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
11 c1z1bA_
100.0
21
PDB header: dna binding protein/dnaChain: A: PDB Molecule: integrase;PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site
12 c5dcfA_
99.9
43
PDB header: recombinationChain: A: PDB Molecule: tyrosine recombinase xerd,dna translocase ftsk;PDBTitle: c-terminal domain of xerd recombinase in complex with gamma domain of2 ftsk
13 c3nkhB_
99.9
18
PDB header: recombinationChain: B: PDB Molecule: integrase;PDBTitle: crystal structure of integrase from mrsa strain staphylococcus aureus
14 d1a0pa2
99.9
42
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
15 d1aiha_
99.9
23
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
16 d1f44a2
99.9
11
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
17 c5c6kB_
99.9
22
PDB header: hydrolaseChain: B: PDB Molecule: integrase;PDBTitle: bacteriophage p2 integrase catalytic domain
18 d1ae9a_
99.7
17
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
19 c3uxuA_
99.7
11
PDB header: recombinationChain: A: PDB Molecule: probable integrase;PDBTitle: the structure of the catalytic domain of the sulfolobus spindle-shaped2 viral integrase reveals an evolutionarily conserved catalytic core3 and supports a mechanism of dna cleavage in trans
20 d5crxb2
99.6
13
Fold: DNA breaking-rejoining enzymesSuperfamily: DNA breaking-rejoining enzymesFamily: Lambda integrase-like, catalytic core
21 c3nrwA_
not modelled
99.5
15
PDB header: recombinationChain: A: PDB Molecule: phage integrase/site-specific recombinase;PDBTitle: crystal structure of the n-terminal domain of phage integrase/site-2 specific recombinase (tnp) from haloarcula marismortui, northeast3 structural genomics consortium target hmr208a
22 d1f44a1
not modelled
99.4
13
Fold: SAM domain-likeSuperfamily: lambda integrase-like, N-terminal domainFamily: lambda integrase-like, N-terminal domain
23 d1a0pa1
not modelled
99.4
30
Fold: SAM domain-likeSuperfamily: lambda integrase-like, N-terminal domainFamily: lambda integrase-like, N-terminal domain
24 c2oxoA_
not modelled
99.2
19
PDB header: dna binding proteinChain: A: PDB Molecule: integrase;PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase
25 c2khqA_
not modelled
99.1
13
PDB header: dna binding proteinChain: A: PDB Molecule: integrase;PDBTitle: solution nmr structure of a phage integrase ssp19472 fragment 59-159 from staphylococcus saprophyticus,3 northeast structural genomics consortium target syr103b
26 c2keyA_
not modelled
99.1
19
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: putative phage integrase;PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein bf2284 from bacteroides fragilis, northeast structural3 genomics consortium target bfr257c
27 c2kiwA_
not modelled
99.0
9
PDB header: dna binding proteinChain: A: PDB Molecule: int protein;PDBTitle: solution nmr structure of the domain n-terminal to the2 integrase domain of sh1003 from staphylococcus3 haemolyticus. northeast structural genomics consortium4 target shr105f (64-166).
28 c2kd1A_
not modelled
99.0
17
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: dna integration/recombination/invertion protein;PDBTitle: solution nmr structure of the integrase-like domain from2 bacillus cereus ordered locus bc_1272. northeast3 structural genomics consortium target bcr268f
29 c3lysC_
not modelled
99.0
19
PDB header: recombinationChain: C: PDB Molecule: prophage pi2 protein 01, integrase;PDBTitle: crystal structure of the n-terminal domain of the prophage pi2 protein2 01 (integrase) from lactococcus lactis, northeast structural genomics3 consortium target kr124f
30 c2kkpA_
not modelled
99.0
16
PDB header: dna binding proteinChain: A: PDB Molecule: phage integrase;PDBTitle: solution nmr structure of the phage integrase sam-like2 domain from moth 1796 from moorella thermoacetica.3 northeast structural genomics consortium target mtr39k4 (residues 64-171).
31 c2kobA_
not modelled
98.9
19
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: uncharacterized protein;PDBTitle: solution nmr structure of clolep_01837 (fragment 61-160)2 from clostridium leptum. northeast structural genomics3 consortium target qlr8a
32 c2kj8A_
not modelled
98.8
16
PDB header: dna binding proteinChain: A: PDB Molecule: putative prophage cps-53 integrase;PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2
33 c2kj9A_
not modelled
98.8
17
PDB header: dna binding proteinChain: A: PDB Molecule: integrase;PDBTitle: nmr structure of intb phage-integrase-like protein fragment2 90-199 from erwinia carotova subsp. atroseptica: northeast3 structural genomics consortium target ewr217e
34 c2kkvA_
not modelled
98.7
17
PDB header: dna binding proteinChain: A: PDB Molecule: integrase;PDBTitle: solution nmr structure of an integrase domain from protein spa42882 from salmonella enterica, northeast structural genomics consortium3 target slr105h
35 c2kj5A_
not modelled
98.4
19
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: phage integrase;PDBTitle: solution nmr structure of a domain from a putative phage integrase2 protein nmul_a0064 from nitrosospira multiformis, northeast3 structural genomics consortium target nmr46c
36 c2khvA_
not modelled
98.4
10
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: phage integrase;PDBTitle: solution nmr structure of protein nmul_a0922 from2 nitrosospira multiformis. northeast structural genomics3 consortium target nmr38b.
37 c2v6eB_
not modelled
96.8
16
PDB header: hydrolaseChain: B: PDB Molecule: protelemorase;PDBTitle: protelomerase telk complexed with substrate dna
38 c4f43A_
not modelled
95.1
18
PDB header: recombination/dnaChain: A: PDB Molecule: protelomerase;PDBTitle: protelomerase tela mutant r255a complexed with caag hairpin dna
39 c3vdoA_
not modelled
45.2
20
PDB header: dna binding protein/protein bindingChain: A: PDB Molecule: rna polymerase sigma factor sigk;PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
40 c3t79A_
not modelled
43.9
10
PDB header: dna binding protein/dnaChain: A: PDB Molecule: klla0e03807p;PDBTitle: ndc10: a platform for inner kinetochore assembly in budding yeast
41 c3sqiA_
not modelled
43.9
10
PDB header: dna binding protein/dnaChain: A: PDB Molecule: klla0e03807p;PDBTitle: dna binding domain of ndc10
42 c3mzyA_
not modelled
39.1
11
PDB header: rna binding proteinChain: A: PDB Molecule: rna polymerase sigma-h factor;PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
43 d1s7oa_
not modelled
34.2
10
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: YlxM/p13-like
44 c2f4qA_
not modelled
22.2
16
PDB header: isomeraseChain: A: PDB Molecule: type i topoisomerase, putative;PDBTitle: crystal structure of deinococcus radiodurans topoisomerase ib
45 d1trra_
not modelled
21.1
26
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: TrpR-likeFamily: Trp repressor, TrpR
46 c5lnfA_
not modelled
20.7
10
PDB header: chaperoneChain: A: PDB Molecule: peroxisomal biogenesis factor 19;PDBTitle: solution nmr structure of farnesylated pex19, c-terminal domain
47 c4cxfA_
not modelled
20.5
18
PDB header: transcriptionChain: A: PDB Molecule: rna polymerase sigma factor cnrh;PDBTitle: structure of cnrh in complex with the cytosolic domain of cnry
48 d1vz0a1
not modelled
19.3
23
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: KorB DNA-binding domain-likeFamily: KorB DNA-binding domain-like
49 c5fgmA_
not modelled
19.1
17
PDB header: hydrolaseChain: A: PDB Molecule: ecf rna polymerase sigma factor sigr;PDBTitle: streptomyces coelicolor sigr region 4
50 c5jwrE_
not modelled
18.5
31
PDB header: transcription regulatorChain: E: PDB Molecule: circadian clock protein kaia;PDBTitle: crystal structure of foldswitch-stabilized kaib in complex with the n-2 terminal ci domain of kaic and a dimer of kaia c-terminal domains3 from thermosynechococcus elongatus
51 d1r8ja1
not modelled
18.0
31
Fold: KaiA/RbsU domainSuperfamily: KaiA/RbsU domainFamily: Circadian clock protein KaiA, C-terminal domain
52 d1v2za_
not modelled
17.1
31
Fold: KaiA/RbsU domainSuperfamily: KaiA/RbsU domainFamily: Circadian clock protein KaiA, C-terminal domain
53 d1sv1a_
not modelled
17.0
31
Fold: KaiA/RbsU domainSuperfamily: KaiA/RbsU domainFamily: Circadian clock protein KaiA, C-terminal domain
54 c6b7qA_
not modelled
16.8
19
PDB header: cell invasionChain: A: PDB Molecule: sdea;PDBTitle: crystal structure of legionella effector protein sdea (lpg2157) aa.2 211-910
55 d1jhga_
not modelled
16.5
23
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: TrpR-likeFamily: Trp repressor, TrpR
56 c3sohB_
not modelled
16.3
8
PDB header: motor proteinChain: B: PDB Molecule: flagellar motor switch protein flig;PDBTitle: architecture of the flagellar rotor
57 c2wl8D_
not modelled
13.3
9
PDB header: protein transportChain: D: PDB Molecule: peroxisomal biogenesis factor 19;PDBTitle: x-ray crystal structure of pex19p
58 c1r71B_
not modelled
12.3
12
PDB header: transcription/dnaChain: B: PDB Molecule: transcriptional repressor protein korb;PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
59 d1umqa_
not modelled
12.0
10
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: FIS-like
60 c1umqA_
not modelled
12.0
10
PDB header: dna-binding proteinChain: A: PDB Molecule: photosynthetic apparatus regulatory protein;PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
61 d2auwa1
not modelled
11.5
20
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: NE0471 C-terminal domain-like
62 c3hugA_
not modelled
11.2
20
PDB header: transcription/membrane proteinChain: A: PDB Molecule: rna polymerase sigma factor;PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
63 c3vepA_
not modelled
10.8
16
PDB header: membrane protein/transcriptionChain: A: PDB Molecule: probable rna polymerase sigma-d factor;PDBTitle: crystal structure of sigd4 in complex with its negative regulator rsda
64 c2lfwA_
not modelled
10.7
15
PDB header: signaling proteinChain: A: PDB Molecule: phyr sigma-like domain;PDBTitle: nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
65 c6in7B_
not modelled
10.2
11
PDB header: transcriptionChain: B: PDB Molecule: rna polymerase sigma-h factor;PDBTitle: crystal structure of algu in complex with muca(cyto)
66 c5of3E_
not modelled
10.2
12
PDB header: replicationChain: E: PDB Molecule: dna primase large subunit pril;PDBTitle: crystal structure of the heterotrimeric prislx primase from s.2 solfataricus.
67 c5wurB_
not modelled
9.7
16
PDB header: metal binding proteinChain: B: PDB Molecule: ecf rna polymerase sigma factor sigw;PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
68 c6c03A_
not modelled
9.6
15
PDB header: transcriptionChain: A: PDB Molecule: putative rna polymerase ecf-subfamily sigma factor;PDBTitle: the crystal structure streptomyces venezuelae rsbn-bldn complex
69 d1xsva_
not modelled
8.8
4
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: YlxM/p13-like
70 d1or7a1
not modelled
8.3
11
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factorsFamily: Sigma4 domain
71 c6dvdF_
not modelled
8.2
20
PDB header: transferase/dnaChain: F: PDB Molecule: ecf rna polymerase sigma factor sigl;PDBTitle: crystal structure of mycobacterium tuberculosis transcription2 initiation complex(ecf sigma factor l) with 6 nt spacer and bromine3 labelled in position "-11
72 d1iufa1
not modelled
8.1
12
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Centromere-binding
73 c2o8xA_
not modelled
8.0
16
PDB header: transcriptionChain: A: PDB Molecule: probable rna polymerase sigma-c factor;PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
74 c4r0gA_
not modelled
7.8
8
PDB header: unknown functionChain: A: PDB Molecule: uncharacterized protein;PDBTitle: crystal structure of lpg0393 from legionella pneumophila
75 d1r71a_
not modelled
7.6
12
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: KorB DNA-binding domain-likeFamily: KorB DNA-binding domain-like
76 d2f2ab1
not modelled
7.5
14
Fold: GatB/YqeY motifSuperfamily: GatB/YqeY motifFamily: GatB/GatE C-terminal domain-like
77 d1fsea_
not modelled
6.9
18
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: C-terminal effector domain of the bipartite response regulatorsFamily: GerE-like (LuxR/UhpA family of transcriptional regulators)
78 d1ldda_
not modelled
6.8
20
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: SCF ubiquitin ligase complex WHB domain
79 c3t0yA_
not modelled
6.7
15
PDB header: transcription regulator/protein bindingChain: A: PDB Molecule: response regulator;PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
80 c5zq2C_
not modelled
6.5
21
PDB header: cell invasionChain: C: PDB Molecule: side;PDBTitle: side apo form
81 c3frwF_
not modelled
6.3
14
PDB header: structural genomics, unknown functionChain: F: PDB Molecule: putative trp repressor protein;PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
82 c2h7fX_
not modelled
6.1
18
PDB header: isomerase/dnaChain: X: PDB Molecule: dna topoisomerase 1;PDBTitle: structure of variola topoisomerase covalently bound to dna
83 d2o4ta1
not modelled
5.9
16
Fold: Left-handed superhelixSuperfamily: BH3980-likeFamily: BH3980-like
84 c2kq6A_
not modelled
5.6
17
PDB header: transport proteinChain: A: PDB Molecule: polycystin-2;PDBTitle: the structure of the ef-hand domain of polycystin-2 suggests a2 mechanism for ca2+-dependent regulation of polycystin-2 channel3 activity
85 d1ijwc_
not modelled
5.6
22
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Recombinase DNA-binding domain
86 d1hcra_
not modelled
5.5
22
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Recombinase DNA-binding domain
87 c5zx3F_
not modelled
5.5
10
PDB header: transcriptionChain: F: PDB Molecule: ecf rna polymerase sigma factor sigh;PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
88 c2x48B_
not modelled
5.3
25
PDB header: viral proteinChain: B: PDB Molecule: cag38821;PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1
89 c2kp7A_
not modelled
5.3
27
PDB header: hydrolaseChain: A: PDB Molecule: crossover junction endonuclease mus81;PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
