Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2909c_(rpsP)_3217165_3217653
DateThu Aug 8 16:20:06 BST 2019
Unique Job ID10e8ba179c0d7da1
SequenceMAVKIKLTRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:70.337 Y:41.550 Z:30.329
Model (left) based on template c5o5jP_
Top template information
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s16;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 70%
113 residues ( 70% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jP_
100.0 88
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s16;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2c3j6vP_
100.0 26
PDB header:ribosome
Chain: P: PDB Molecule:28s ribosomal protein s16, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
3d2uubp1
100.0 51
Fold:Ribosomal protein S16
Superfamily:Ribosomal protein S16
Family:Ribosomal protein S16
4c3bbnP_
100.0 35
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s16;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
5d2gy9p1
100.0 36
Fold:Ribosomal protein S16
Superfamily:Ribosomal protein S16
Family:Ribosomal protein S16
6d3bn0a1
100.0 29
Fold:Ribosomal protein S16
Superfamily:Ribosomal protein S16
Family:Ribosomal protein S16
7d1vbva1
57.9 25
Fold:SH3-like barrel
Superfamily:YccV-like
Family:YccV-like
8c1vw4J_
46.4 24
PDB header:ribosome
Chain: J: PDB Molecule:54s ribosomal protein l10, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
9c4v19P_
37.6 22
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein ul15m, mrpl15;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
10c2n8oA_
24.1 32
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin aureocin a53;
PDBTitle: nmr solution structure of aureocin a53
11d1vqol1
22.5 11
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
12c3f62A_
20.8 23
PDB header:cytokine
Chain: A: PDB Molecule:interleukin 18 binding protein;
PDBTitle: crystal structure of human il-18 in complex with ectromelia virus il-2 18 binding protein
13c3c0kB_
15.3 25
PDB header:transferase
Chain: B: PDB Molecule:upf0064 protein yccw;
PDBTitle: crystal structure of a ribosomal rna methyltranferase
14c3dkxA_
15.3 23
PDB header:replication
Chain: A: PDB Molecule:replication protein repb;
PDBTitle: crystal structure of the replication initiator protein encoded on2 plasmid pmv158 (repb), trigonal form, to 2.7 ang resolution
15c2v3mF_
15.0 45
PDB header:ribosomal protein
Chain: F: PDB Molecule:naf1;
PDBTitle: structure of the gar1 domain of naf1
16c4ce4P_
12.6 21
PDB header:ribosome
Chain: P: PDB Molecule:mrpl15;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
17c3g0kA_
12.1 10
PDB header:ca-binding protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: crystal structure of a protein of unknown function with a cystatin-2 like fold (saro_2880) from novosphingobium aromaticivorans dsm at3 1.30 a resolution
18c3ngvA_
11.7 24
PDB header:transport protein
Chain: A: PDB Molecule:d7 protein;
PDBTitle: crystal structure of anst-d7l1
19d2dlxa1
11.6 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:UAS domain
20d2heqa1
10.5 32
Fold:SH3-like barrel
Superfamily:YorP-like
Family:YorP-like
21c4hplA_
not modelled 10.4 33
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor;
PDBTitle: pcgf1 ub fold (rawul)/bcor pufd complex
22d1jwya1
not modelled 10.3 46
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
23c2lydA_
not modelled 10.3 5
PDB header:transcription/protein binding
Chain: A: PDB Molecule:decapping protein 1;
PDBTitle: the solution structure of the dm dcp1 evh1 domain in complex with the2 xrn1 dbm peptide
24c5o60M_
not modelled 9.9 18
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
25c1m6bB_
not modelled 9.3 8
PDB header:signaling protein, transferase
Chain: B: PDB Molecule:receptor protein-tyrosine kinase erbb-3;
PDBTitle: structure of the her3 (erbb3) extracellular domain
26c4hpmA_
not modelled 9.3 27
PDB header:transcription
Chain: A: PDB Molecule:bcl-6 corepressor-like protein 1;
PDBTitle: pcgf1 ub fold (rawul)/bcorl1 pufd complex
27c4z9hA_
not modelled 8.6 15
PDB header:protein binding
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein ii;
PDBTitle: asp-tar from e. coli
28c2w2rA_
not modelled 8.5 25
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the vesicular stomatitis virus matrix protein
29c2ftcH_
not modelled 7.7 27
PDB header:ribosome
Chain: H: PDB Molecule:39s ribosomal protein l13, mitochondrial;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
30d1jjcb2
not modelled 7.6 28
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
31c4dagA_
not modelled 7.6 25
PDB header:viral protein/immune system
Chain: A: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the human metapneumovirus fusion protein with2 neutralizing antibody identifies a pneumovirus antigenic site
32c3dztA_
not modelled 7.4 19
PDB header:odorant-binding protein
Chain: A: PDB Molecule:d7 protein;
PDBTitle: aed7-leukotriene e4 complex
33c2eqnA_
not modelled 7.2 27
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein loc92345;
PDBTitle: solution structure of the naf1 domain of hypothetical2 protein bc008207 [homo sapiens]
34c1m6bA_
not modelled 7.1 8
PDB header:signaling protein, transferase
Chain: A: PDB Molecule:receptor protein-tyrosine kinase erbb-3;
PDBTitle: structure of the her3 (erbb3) extracellular domain
35d1s4ea2
not modelled 7.1 23
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
36d1lg7a_
not modelled 6.9 25
Fold:VSV matrix protein
Superfamily:VSV matrix protein
Family:VSV matrix protein
37c2h0eA_
not modelled 6.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:transthyretin-like protein pucm;
PDBTitle: crystal structure of pucm in the absence of substrate
38d1dq3a4
not modelled 6.6 18
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
39c5zktA_
not modelled 6.4 31
PDB header:transcription
Chain: A: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
40c4m8rA_
not modelled 6.4 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf4784 family protein (baccac_01631) from2 bacteroides caccae atcc 43185 at 2.50 a resolution
41c2n8pA_
not modelled 6.3 29
PDB header:antimicrobial protein
Chain: A: PDB Molecule:lacticin q;
PDBTitle: solution structure of lacticin q
42c4v19N_
not modelled 6.1 27
PDB header:ribosome
Chain: N: PDB Molecule:mitoribosomal protein ul13m, mrpl13;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
43d2ix0a1
not modelled 5.8 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
44d1q67a_
not modelled 5.8 9
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Dcp1
45c2qlwA_
not modelled 5.7 13
PDB header:isomerase
Chain: A: PDB Molecule:rhau;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
46c2qlxA_
not modelled 5.7 13
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
47c4rgiA_
not modelled 5.7 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ktsc domain protein ypo2434 from yersinia pestis
48c1vw4H_
not modelled 5.7 27
PDB header:ribosome
Chain: H: PDB Molecule:54s ribosomal protein l23, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
49c5mabA_
not modelled 5.6 29
PDB header:electron transport
Chain: A: PDB Molecule:foxe;
PDBTitle: foxe p3121 crystal structure of rhodopseudomonas ferrooxidans sw22 putative iron oxidase
50c5j2yA_
not modelled 5.5 21
PDB header:gene regulation/dna
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: molecular insight into the regulatory mechanism of the quorum-sensing2 repressor rsal in pseudomonas aeruginosa
51c5zktB_
not modelled 5.3 31
PDB header:transcription
Chain: B: PDB Molecule:putative transcription factor pcf6;
PDBTitle: crystal structure of tcp domain of pcf6 in oryza sativa
52c3p11A_
not modelled 5.1 8
PDB header:immune system
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: anti-egfr/her3 fab dl11 in complex with domains i-iii of the her32 extracellular region

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